Moc06g37790 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g37790
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	heat stress transcription factor C-1-like
Location	chr6: 29067239 .. 29067692 (-)
RNA-Seq Expression	Moc06g37790
Synteny	Moc06g37790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGACGAGGATTCGCCGTTAACAGAAGAACTAGAGGAATGAGCCTACGGAGCTCCATCTCAGATCCTTCCGAGATGGGATGTTCCCCACTTCCTATTAAGGAATTCATTCGACGTACCTAGGAGTGTGTCCGAGGCCGACCTACGTGAACCCGACACATCCGACCTCAAATCCGACCAAGGTAACCGCCTGTCGAAACTCCTGCCGGAACCTAAACCTATAAATAGAGGGCCTCATTTCACCATCAGGTATGAAATTTCTCCTCGAACTTAATATTGAGTCCGAGCTGCTTACTGACTTGAGCGTCGGAGGTTTTGCCCTCTTGTGCAGGTCTTCCCTTCGCGTTTCGGGTCGGAGCAAGGACCGGGTACGAGCTAGATTAACGTTGTGCAAATCCTTGCATAAACAAAGTACAACACGTGGGGTGGATGATCAAACTCACAACCTCTGA

mRNA sequence

ATGGAGGACGAGGATTCGCCGAATTCATTCGACGTACCTAGGAGTGTGTCCGAGGCCGACCTACGTGAACCCGACACATCCGACCTCAAATCCGACCAAGGTAACCGCCTGTCGAAACTCCTGCCGGAACCTAAACCTATAAATAGAGGGCCTCATTTCACCATCAGGTCTTCCCTTCGCGTTTCGGGTCGGAGCAAGGACCGGGTACGAGCTAGATTAACGTTGTGCAAATCCTTGCATAAACAAAGTACAACACGTGGGGTGGATGATCAAACTCACAACCTCTGA

Coding sequence (CDS)

ATGGAGGACGAGGATTCGCCGAATTCATTCGACGTACCTAGGAGTGTGTCCGAGGCCGACCTACGTGAACCCGACACATCCGACCTCAAATCCGACCAAGGTAACCGCCTGTCGAAACTCCTGCCGGAACCTAAACCTATAAATAGAGGGCCTCATTTCACCATCAGGTCTTCCCTTCGCGTTTCGGGTCGGAGCAAGGACCGGGTACGAGCTAGATTAACGTTGTGCAAATCCTTGCATAAACAAAGTACAACACGTGGGGTGGATGATCAAACTCACAACCTCTGA

Protein sequence

MEDEDSPNSFDVPRSVSEADLREPDTSDLKSDQGNRLSKLLPEPKPINRGPHFTIRSSLRVSGRSKDRVRARLTLCKSLHKQSTTRGVDDQTHNL

Homology

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BLAST of Moc06g37790 vs. ExPASy TrEMBL
Match: A0A6J1DUU1 (heat stress transcription factor C-1-like OS=Momordica charantia OX=3673 GN=LOC111024233 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 9.4e-04
Identity = 31/45 (68.89%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 14  RSVSEADLREPDTSDLKSDQGNRLSKLLPEPKPINRGPHFTIRSS 59
           +SVSE+DL EPDTSD KSDQGNR S    E KPINRG  FT  SS
Sbjct: 182 QSVSESDLLEPDTSDFKSDQGNRPS----ESKPINRGLRFTNFSS 222

The following BLAST results are available for this feature:

BLAST of Moc06g37790 vs.


Match Name	E-value	Identity	Description

BLAST of Moc06g37790 vs.


Match Name	E-value	Identity	Description

BLAST of Moc06g37790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DUU1	9.4e-04	68.89	heat stress transcription factor C-1-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]

BLAST of Moc06g37790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g37790.1	Moc06g37790.1	mRNA