Moc06g36220 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g36220
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr6: 27861642 .. 27861872 (+)
RNA-Seq Expression	Moc06g36220
Synteny	Moc06g36220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGAAACGCATGGATGAAATTGAGGATAAAGGGAATCTAGGTCTTCCGGGGCGTTTCGCGGGCAGCAAGAAAGGCGTAGCGAAGGCGCAGGAGGAGATGGAACGACGCCGTTGGAGTGGAGACCAACCGATTTTGACTCGAGTGGGGGAAGTAGACTCGGTTCAGTCCCCTTACGATTGCGACTTGAAAGCCAAGTTTACTTGGACCCGAAGTTCGCGAGGATAA

mRNA sequence

ATGGCAATGAAACGCATGGATGAAATTGAGGATAAAGGGAATCTAGGTCTTCCGGGGCGTTTCGCGGGCAGCAAGAAAGGCGTAGCGAAGGCGCAGGAGGAGATGGAACGACGCCGTTGGAGTGGAGACCAACCGATTTTGACTCGAGTGGGGGAAGTAGACTCGGTTCAGTCCCCTTACGATTGCGACTTGAAAGCCAAGTTTACTTGGACCCGAAGTTCGCGAGGATAA

Coding sequence (CDS)

ATGGCAATGAAACGCATGGATGAAATTGAGGATAAAGGGAATCTAGGTCTTCCGGGGCGTTTCGCGGGCAGCAAGAAAGGCGTAGCGAAGGCGCAGGAGGAGATGGAACGACGCCGTTGGAGTGGAGACCAACCGATTTTGACTCGAGTGGGGGAAGTAGACTCGGTTCAGTCCCCTTACGATTGCGACTTGAAAGCCAAGTTTACTTGGACCCGAAGTTCGCGAGGATAA

Protein sequence

MAMKRMDEIEDKGNLGLPGRFAGSKKGVAKAQEEMERRRWSGDQPILTRVGEVDSVQSPYDCDLKAKFTWTRSSRG

Homology

[Close]

BLAST of Moc06g36220 vs. NCBI nr
Match: KGN60354.1 (hypothetical protein Csa_002333 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-06
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 1  MAMKRMDEIEDKGNLGLPGRF--------AGSKKGVAKAQEEMERRRWSGDQPILTRVGE 60
          M ++  D+   KGNLGL  RF           +KG  + + EM+RRR   D   +  + +
Sbjct: 1  MEIEDKDDETPKGNLGLERRFQRIEERKNGALRKGGMEMEMEMKRRRLRADSDSVC-LWK 60

Query: 61 VDSVQSPYDCDLKAKFTWTRSSRG 77
          VDSV+S +DCDLK +FTW RSSRG
Sbjct: 61 VDSVESAFDCDLKVEFTWARSSRG 83

[Close]

BLAST of Moc06g36220 vs. ExPASy TrEMBL
Match: A0A0A0LH48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G900990 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.3e-07
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 1  MAMKRMDEIEDKGNLGLPGRF--------AGSKKGVAKAQEEMERRRWSGDQPILTRVGE 60
          M ++  D+   KGNLGL  RF           +KG  + + EM+RRR   D   +  + +
Sbjct: 1  MEIEDKDDETPKGNLGLERRFQRIEERKNGALRKGGMEMEMEMKRRRLRADSDSVC-LWK 60

Query: 61 VDSVQSPYDCDLKAKFTWTRSSRG 77
          VDSV+S +DCDLK +FTW RSSRG
Sbjct: 61 VDSVESAFDCDLKVEFTWARSSRG 83

The following BLAST results are available for this feature:

BLAST of Moc06g36220 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60354.1	1.5e-06	42.86	hypothetical protein Csa_002333 [Cucumis sativus]	[more]

BLAST of Moc06g36220 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g36220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH48	7.3e-07	42.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G900990 PE=4 SV=1	[more]

BLAST of Moc06g36220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g36220.1	Moc06g36220.1	mRNA