Moc06g34920 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g34920
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CCHC-type domain-containing protein
Location	chr6: 26560409 .. 26561269 (+)
RNA-Seq Expression	Moc06g34920
Synteny	Moc06g34920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATTCTTTATGAGTCCAGTGAAGATTGACGTAATGAAATTTTATGGAAGGATCAACTTTGGCTTGTGGCAAGTGCAAGTCAAGGATGTGCTGATACAATCTGGGTTACACAAGGCATTGAAGGGAAGACCGAGTGAAGGTGCTTCGGAAAAGCTAAGCGGTGATGGTGGTCCAATGGAGTCCAGTGGTGGTTCTAGCAGAAGTTCTAAGAAGTCTAGCATGAGTGATGAAGATTGAGAGGAAATGGATTTGAGAGCTGCAAGCGCGATACGAACAAGTTTGGCTAAGAATATTCTTGCGAATGTGCAGGGAATTTCGACAGCCAAAGAACTTTGGGAGAAGCTCGAAGCGTTGTATCAGGCAAAGGGCATCTCAAATCGGTTGTACCTAAAGGAGCAGTTTCACACGCTGCGAATGGAGGAAGGTATGAAAATTTCAGATCATCTGAGTAATCTCAATAGCATCATCTTTGAGCTGGAGGCGATCGAAGTGAAGATAGATGACGAAGATAAAGCACTCAGGCTCATCTTATCACTTCCACCTTCTTATGAACACATGAAGCCGATCTTGATGTATGGGAAGAATACTTTGAATTTTGCTGAGGTTACTAGTAAACTCTTCTTAGAGGAAAGAAGGCTGAAGAGTGAAGGGCGTACTTCACATGAAGATTCGGCTCTGGTAGCTAGCAATTGGAAGAAGAAGAAAGACTCCGTACAAAAGAAAGCTTGTTGCTGGGGATGCAGACAGTCTGGACACATGAAGAAAGATTGTCCCAACAGAGCCGATTTGTCAAAGGGCTTTGGGCGGGATGCTGACAATGTTTCTCTCATCAGTGGAGACGATGATCTCTTCCTTTGA

mRNA sequence

ATGTCATTCTTTATGAGTCCAGTGAAGATTGACGTAATGAAATTTTATGGAAGGATCAACTTTGGCTTGTGGCAAGTGCAAGTCAAGGATGTGCTGATACAATCTGGGTTACACAAGGCATTGAAGGGAAGACCGAGTGAAGGTGCTTCGGAAAAGCTAAGCGGTGATGGTGGTCCAATGGAGTCCAGTGGTGGTTCTAGCAGAACCAAAGAACTTTGGGAGAAGCTCGAAGCGTTGTATCAGGCAAAGGGCATCTCAAATCGGTTGTACCTAAAGGAGCAGTTTCACACGCTGCGAATGGAGGAAGGTATGAAAATTTCAGATCATCTGAGTAATCTCAATAGCATCATCTTTGAGCTGGAGGCGATCGAAGTGAAGATAGATGACGAAGATAAAGCACTCAGGCTCATCTTATCACTTCCACCTTCTTATGAACACATGAAGCCGATCTTGATGTATGGGAAGAATACTTTGAATTTTGCTGAGGTTACTAGTAAACTCTTCTTAGAGGAAAGAAGGCTGAAGAGTGAAGGGCGTACTTCACATGAAGATTCGGCTCTGGTAGCTAGCAATTGGAAGAAGAAGAAAGACTCCGTACAAAAGAAAGCTTGTTGCTGGGGATGCAGACAGTCTGGACACATGAAGAAAGATTGTCCCAACAGAGCCGATTTGTCAAAGGGCTTTGGGCGGGATGCTGACAATGTTTCTCTCATCAGTGGAGACGATGATCTCTTCCTTTGA

Coding sequence (CDS)

ATGTCATTCTTTATGAGTCCAGTGAAGATTGACGTAATGAAATTTTATGGAAGGATCAACTTTGGCTTGTGGCAAGTGCAAGTCAAGGATGTGCTGATACAATCTGGGTTACACAAGGCATTGAAGGGAAGACCGAGTGAAGGTGCTTCGGAAAAGCTAAGCGGTGATGGTGGTCCAATGGAGTCCAGTGGTGGTTCTAGCAGAACCAAAGAACTTTGGGAGAAGCTCGAAGCGTTGTATCAGGCAAAGGGCATCTCAAATCGGTTGTACCTAAAGGAGCAGTTTCACACGCTGCGAATGGAGGAAGGTATGAAAATTTCAGATCATCTGAGTAATCTCAATAGCATCATCTTTGAGCTGGAGGCGATCGAAGTGAAGATAGATGACGAAGATAAAGCACTCAGGCTCATCTTATCACTTCCACCTTCTTATGAACACATGAAGCCGATCTTGATGTATGGGAAGAATACTTTGAATTTTGCTGAGGTTACTAGTAAACTCTTCTTAGAGGAAAGAAGGCTGAAGAGTGAAGGGCGTACTTCACATGAAGATTCGGCTCTGGTAGCTAGCAATTGGAAGAAGAAGAAAGACTCCGTACAAAAGAAAGCTTGTTGCTGGGGATGCAGACAGTCTGGACACATGAAGAAAGATTGTCCCAACAGAGCCGATTTGTCAAAGGGCTTTGGGCGGGATGCTGACAATGTTTCTCTCATCAGTGGAGACGATGATCTCTTCCTTTGA

Protein sequence

MSFFMSPVKIDVMKFYGRINFGLWQVQVKDVLIQSGLHKALKGRPSEGASEKLSGDGGPMESSGGSSRTKELWEKLEALYQAKGISNRLYLKEQFHTLRMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLPPSYEHMKPILMYGKNTLNFAEVTSKLFLEERRLKSEGRTSHEDSALVASNWKKKKDSVQKKACCWGCRQSGHMKKDCPNRADLSKGFGRDADNVSLISGDDDLFL

Homology

[Close]

BLAST of Moc06g34920 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia])

HSP 1 Score: 387.9 bits (995), Expect = 6.6e-104
Identity = 208/261 (79.69%), Postives = 210/261 (80.46%), Query Frame = 0


Query: 1   MSFFMSPVKIDVMKFYGRINFGLWQVQVKDVLIQSGLHKALKGRPSEGASEKLSGDGGPM 60
           MSFFMSPVKIDV KF G INFGLWQVQVKDVLIQS LHKALKGRPSEGASEKLS DGGPM
Sbjct: 295 MSFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPM 354

Query: 61  ESSGGSSR----------------------------------------TKELWEKLEALY 120
           ESSGGSSR                                         KELWEKLEALY
Sbjct: 355 ESSGGSSRGSKKSSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALY 414

Query: 121 QAKGISNRLYLKEQFHTLRMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSL 180
           QAKGISNRLYLKEQFHTL+MEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSL
Sbjct: 415 QAKGISNRLYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSL 474

Query: 181 PPSYEHMKPILMYGKNTLNFAEVTSKLFLEERRLKSEGRTSHEDSALVASNWKKKKDSVQ 222
           P SYEHMKPILMYGK+TLNFAEVTSKL  EERRLKSEGRTSHEDSALV SNWKKKKDSVQ
Sbjct: 475 PXSYEHMKPILMYGKDTLNFAEVTSKLLSEERRLKSEGRTSHEDSALVVSNWKKKKDSVQ 534

[Close]

BLAST of Moc06g34920 vs. NCBI nr
Match: KAF5765959.1 (putative RNA-directed DNA polymerase [Helianthus annuus])

HSP 1 Score: 265.4 bits (677), Expect = 4.9e-67
Identity = 148/261 (56.70%), Postives = 177/261 (67.82%), Query Frame = 0


Query: 6   SPVKIDVMKFYGRINFGLWQVQVKDVLIQSGLHKALKGRPSEGASEKLSGDG-------- 65
           SP++ DV K+ GRINFGLWQVQVKDVLIQSGLHKAL+G+P+  +S+  SG          
Sbjct: 5   SPMRFDVEKYDGRINFGLWQVQVKDVLIQSGLHKALRGKPTPVSSKDSSGTSKDDDEEWE 64

Query: 66  ----------------GPMESSGGSSRTKELWEKLEALYQAKGISNRLYLKEQFHTLRME 125
                             + +  G S  K+LWEKLE LYQ KGI NRLYLKEQFHTLRM+
Sbjct: 65  DLDLRAASAIRLCLAKNVLANVHGISTAKDLWEKLEQLYQGKGIPNRLYLKEQFHTLRMD 124

Query: 126 EGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLPPSYEHMKPILMYGKNTLNFA 185
              KISDHLS LN+I+ ELEAI VK++DEDKALRLILSL  SYEHMKPILMYGK TL +A
Sbjct: 125 GDTKISDHLSVLNNIVSELEAIGVKVEDEDKALRLILSLTSSYEHMKPILMYGKETLKYA 184

Query: 186 EVTSKLFLEERRLKSEGRTSHEDSALVASNWKKKKDSVQKKACCWGCRQSGHMKKDCPNR 243
           +VT KL  EE+RL S G TS E + L+  N KKK    QK   CW C QSGH+K++CP  
Sbjct: 185 DVTEKLLSEEKRLGSSGHTSSEGTVLICGNGKKKHP--QKIPVCWKCGQSGHVKRNCPGG 244

[Close]

BLAST of Moc06g34920 vs. NCBI nr
Match: KAF5758504.1 (putative RNA-directed DNA polymerase [Helianthus annuus])

HSP 1 Score: 263.5 bits (672), Expect = 1.9e-66
Identity = 148/261 (56.70%), Postives = 177/261 (67.82%), Query Frame = 0


Query: 6   SPVKIDVMKFYGRINFGLWQVQVKDVLIQSGLHKALKGRPSEGASEKLSGDG-------- 65
           SP++  V K+ GRINFGLWQVQVKDVLIQSGLHKAL+G+P+  +S+  SG          
Sbjct: 5   SPMRFVVEKYDGRINFGLWQVQVKDVLIQSGLHKALRGKPTPVSSKDSSGTSKDDDEEWE 64

Query: 66  ----------------GPMESSGGSSRTKELWEKLEALYQAKGISNRLYLKEQFHTLRME 125
                             + +  G S  K+LWEKLE LYQ KGISNRLYLKEQFHTLRM+
Sbjct: 65  DLDLRAASAIRLCLAKNVLANVHGISTAKDLWEKLEQLYQGKGISNRLYLKEQFHTLRMD 124

Query: 126 EGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLPPSYEHMKPILMYGKNTLNFA 185
              KISDHLS LN+I+ ELEAI VK++DEDKALRLILSL  SYEHMKPILMYGK TL +A
Sbjct: 125 GDTKISDHLSVLNNIVSELEAIGVKVEDEDKALRLILSLTSSYEHMKPILMYGKETLKYA 184

Query: 186 EVTSKLFLEERRLKSEGRTSHEDSALVASNWKKKKDSVQKKACCWGCRQSGHMKKDCPNR 243
           +VT KL  EE+RL S G TS E + L+  N KKK    QK   CW C QSGH+K++CP  
Sbjct: 185 DVTEKLLSEEKRLGSSGHTSSEGTVLICGNGKKKHP--QKIPVCWKCGQSGHVKRNCPGG 244

[Close]

BLAST of Moc06g34920 vs. NCBI nr
Match: KAE8732867.1 (hypothetical protein F3Y22_tig00001713pilonHSYRG00162 [Hibiscus syriacus])

HSP 1 Score: 255.0 bits (650), Expect = 6.7e-64
Identity = 149/273 (54.58%), Postives = 174/273 (63.74%), Query Frame = 0


Query: 9   KIDVMKFYGRINFGLWQVQVKDVLIQSGLHKALKGRP---SEGAS----EKLSGDGGPME 68
           + D+ KF GRINFGLWQVQVKD+LIQSGL+KALKG+P   SEG         SGD G  +
Sbjct: 4   RFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPASLSEGKEPDKPSDSSGDKGKSK 63

Query: 69  SSGGS---------------------------SRTKELWEKLEALYQAKGISNRLYLKEQ 128
            S                              S TKELWEKLE +YQAK +SNRLYLKE+
Sbjct: 64  MSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMYQAKSLSNRLYLKEK 123

Query: 129 FHTLRMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLPPSYEHMKPILMYG 188
           FH L+MEEG KISDHLS LN I+ ELE+I V IDDEDKALRLI SLP SYEHM+ +LMYG
Sbjct: 124 FHKLQMEEGTKISDHLSALNGIVSELESIGVDIDDEDKALRLIWSLPSSYEHMQTVLMYG 183

Query: 189 KNTLNFAEVTSKLFLEERRLKSEGRTSHEDSALVASNWKKKKDSVQKKACCWGCRQSGHM 247
           K  +NF+EVTSKL  EERRLK+    S E  AL     +KK    +KK  CWGC Q GH+
Sbjct: 184 KENVNFSEVTSKLISEERRLKNGENKSSESGALSVCGNRKKYKGSKKKIICWGCGQPGHL 243

[Close]

BLAST of Moc06g34920 vs. NCBI nr
Match: QHN81458.1 (Retrovirus-related Pol polyprotein [Arachis hypogaea])

HSP 1 Score: 253.8 bits (647), Expect = 1.5e-63
Identity = 144/257 (56.03%), Postives = 174/257 (67.70%), Query Frame = 0


Query: 1   MSFFMSPVKIDVMKFYGRINFGLWQVQVKDVLIQSGLHKALKGRPSEGASE--------- 60
           MS + S VK+++ KF GRINFGLWQ+QVKDVLIQSGLHKALK R S    E         
Sbjct: 1   MSGYSSAVKLEIEKFDGRINFGLWQIQVKDVLIQSGLHKALKERISGMKDEEWEELDLRA 60

Query: 61  ----KLSGDGGPMESSGGSSRTKELWEKLEALYQAKGISNRLYLKEQFHTLRMEEGMKIS 120
               +L      + +  G    KELW+KLE LYQ+KGISNRL LKEQFH LRM+  +KIS
Sbjct: 61  ASAIRLCLAKNVLANVQGIKTAKELWDKLEGLYQSKGISNRLLLKEQFHNLRMDHNVKIS 120

Query: 121 DHLSNLNSIIFELEAIEVKIDDEDKALRLILSLPPSYEHMKPILMYGKNTLNFAEVTSKL 180
           DHLS +N I+ ELEAI VKIDDEDKALRLILSLP SYE++KP+LMYGK TLNF EV SKL
Sbjct: 121 DHLSAINGIVSELEAIGVKIDDEDKALRLILSLPSSYEYIKPVLMYGKETLNFEEVASKL 180

Query: 181 FLEERRLKSEGRTSHEDSALVASNWKKKKDSVQKKACCWGCRQSGHMKKDCPNRADLSKG 240
             EERR+K+EG TS  D ALVA +    K +  +   CW C +SGH+K++CP  A   K 
Sbjct: 181 IAEERRMKNEGSTS-SDLALVARSDNYGKGNRGRSVTCWKCGKSGHVKRNCPGNAVSEKD 240

Query: 241 FGRDADNVSLISGDDDL 245
              D  N++L   +DD+
Sbjct: 241 SQSDTCNIALSMREDDV 256

[Close]

BLAST of Moc06g34920 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-30
Identity = 88/277 (31.77%), Postives = 140/277 (50.54%), Query Frame = 0


Query: 5   MSPVKIDVMKFYGRINFGLWQVQVKDVLIQSGLHKALKGRPSEGASEKLSGDGGPMESSG 64
           MS VK +V KF G   F  WQ +++D+LIQ GLHK L     +  + K + D   ++   
Sbjct: 1   MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMK-AEDWADLDERA 60

Query: 65  GSS-----------------RTKELWEKLEALYQAKGISNRLYLKEQFHTLRMEEGMKIS 124
            S+                   + +W +LE+LY +K ++N+LYLK+Q + L M EG    
Sbjct: 61  ASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFL 120

Query: 125 DHLSNLNSIIFELEAIEVKIDDEDKALRLILSLPPSYEHMKPILMYGKNTLNFAEVTSKL 184
            HL+  N +I +L  + VKI++EDKA+ L+ SLP SY+++   +++GK T+   +VTS L
Sbjct: 121 SHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSAL 180

Query: 185 FLEERRLK----------SEGR-----TSHEDSALVASNWKKKKDSVQKKACCWGCRQSG 244
            L E+  K          +EGR      S  +     +  K K  S  +   C+ C Q G
Sbjct: 181 LLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPG 240

Query: 245 HMKKDCPN---RADLSKGFGRDADNVSLISGDDDLFL 247
           H K+DCPN       + G   D +  +++  +D++ L
Sbjct: 241 HFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVL 276

[Close]

BLAST of Moc06g34920 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 59.3 bits (142), Expect = 7.0e-08
Identity = 58/248 (23.39%), Postives = 117/248 (47.18%), Query Frame = 0


Query: 5   MSPVKIDVMKFYGRINFGLWQVQVKDVLIQSGLHKALKG-RPSE--------------GA 64
           M   K ++  F G   + +W+ +++ +L +  + K + G  P+E                
Sbjct: 1   MDKAKRNIKPFDGE-KYAIWKFRIRALLAEQDVLKVVDGLMPNEVDDSWKKAERCAKSTI 60

Query: 65  SEKLSGDGGPMESSGGSSRTKELWEKLEALYQAKGISNRLYLKEQFHTLRMEEGMKISDH 124
            E LS       +S  ++R  ++ E L+A+Y+ K ++++L L+++  +L++   M +  H
Sbjct: 61  IEYLSDSFLNFATSDITAR--QILENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSH 120

Query: 125 LSNLNSIIFELEAIEVKIDDEDKALRLILSLPPSYEH-MKPILMYGKNTLNFAEVTSKLF 184
               + +I EL A   KI++ DK   L+++LP  Y+  +  I    +  L  A V ++L 
Sbjct: 121 FHIFDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFVKNRLL 180

Query: 185 LEERRLKSEGRTSHED--SALVASNWKKKKDSVQK----------------KACCWGCRQ 219
            +E ++K++   + +   +A+V +N    K+++ K                K  C  C +
Sbjct: 181 DQEIKIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHHCGR 240

[Close]

BLAST of Moc06g34920 vs. ExPASy TrEMBL
Match: A0A6J1CG82 (uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010521 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 3.2e-104
Identity = 208/261 (79.69%), Postives = 210/261 (80.46%), Query Frame = 0


Query: 1   MSFFMSPVKIDVMKFYGRINFGLWQVQVKDVLIQSGLHKALKGRPSEGASEKLSGDGGPM 60
           MSFFMSPVKIDV KF G INFGLWQVQVKDVLIQS LHKALKGRPSEGASEKLS DGGPM
Sbjct: 295 MSFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPM 354

Query: 61  ESSGGSSR----------------------------------------TKELWEKLEALY 120
           ESSGGSSR                                         KELWEKLEALY
Sbjct: 355 ESSGGSSRGSKKSSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALY 414

Query: 121 QAKGISNRLYLKEQFHTLRMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSL 180
           QAKGISNRLYLKEQFHTL+MEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSL
Sbjct: 415 QAKGISNRLYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSL 474

Query: 181 PPSYEHMKPILMYGKNTLNFAEVTSKLFLEERRLKSEGRTSHEDSALVASNWKKKKDSVQ 222
           P SYEHMKPILMYGK+TLNFAEVTSKL  EERRLKSEGRTSHEDSALV SNWKKKKDSVQ
Sbjct: 475 PXSYEHMKPILMYGKDTLNFAEVTSKLLSEERRLKSEGRTSHEDSALVVSNWKKKKDSVQ 534

[Close]

BLAST of Moc06g34920 vs. ExPASy TrEMBL
Match: A0A6A3CWI3 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00001713pilonHSYRG00162 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 3.2e-64
Identity = 149/273 (54.58%), Postives = 174/273 (63.74%), Query Frame = 0


Query: 9   KIDVMKFYGRINFGLWQVQVKDVLIQSGLHKALKGRP---SEGAS----EKLSGDGGPME 68
           + D+ KF GRINFGLWQVQVKD+LIQSGL+KALKG+P   SEG         SGD G  +
Sbjct: 4   RFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPASLSEGKEPDKPSDSSGDKGKSK 63

Query: 69  SSGGS---------------------------SRTKELWEKLEALYQAKGISNRLYLKEQ 128
            S                              S TKELWEKLE +YQAK +SNRLYLKE+
Sbjct: 64  MSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMYQAKSLSNRLYLKEK 123

Query: 129 FHTLRMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLPPSYEHMKPILMYG 188
           FH L+MEEG KISDHLS LN I+ ELE+I V IDDEDKALRLI SLP SYEHM+ +LMYG
Sbjct: 124 FHKLQMEEGTKISDHLSALNGIVSELESIGVDIDDEDKALRLIWSLPSSYEHMQTVLMYG 183

Query: 189 KNTLNFAEVTSKLFLEERRLKSEGRTSHEDSALVASNWKKKKDSVQKKACCWGCRQSGHM 247
           K  +NF+EVTSKL  EERRLK+    S E  AL     +KK    +KK  CWGC Q GH+
Sbjct: 184 KENVNFSEVTSKLISEERRLKNGENKSSESGALSVCGNRKKYKGSKKKIICWGCGQPGHL 243

[Close]

BLAST of Moc06g34920 vs. ExPASy TrEMBL
Match: A0A6A3BK59 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110050pilonHSYRG00143 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 9.4e-64
Identity = 148/273 (54.21%), Postives = 174/273 (63.74%), Query Frame = 0


Query: 9   KIDVMKFYGRINFGLWQVQVKDVLIQSGLHKALKGRP---SEGAS----EKLSGDGGPME 68
           + D+ KF GRINFGLWQVQVKD+LIQSGL+KALKG+P   SEG         SGD G  +
Sbjct: 4   RFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPASLSEGKEPDKPSDSSGDKGKSK 63

Query: 69  SSGGS---------------------------SRTKELWEKLEALYQAKGISNRLYLKEQ 128
            S                              S TKELWEKLE +YQAK +SNRLYLKE+
Sbjct: 64  MSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMYQAKSLSNRLYLKEK 123

Query: 129 FHTLRMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLPPSYEHMKPILMYG 188
           FH L+MEEG KISDHLS LN I+ ELE+I V+IDDEDKALRLI SLP SYEHM+ +LMYG
Sbjct: 124 FHKLQMEEGTKISDHLSALNGIVSELESIGVEIDDEDKALRLIWSLPSSYEHMQTVLMYG 183

Query: 189 KNTLNFAEVTSKLFLEERRLKSEGRTSHEDSALVASNWKKKKDSVQKKACCWGCRQSGHM 247
           K  +NF+EVTSKL  EERRLK+    S E  AL     +KK    +KK  CWGC Q GH+
Sbjct: 184 KENVNFSEVTSKLISEERRLKNGENKSSESGALSVCGNRKKYKGSKKKIICWGCGQPGHL 243

[Close]

BLAST of Moc06g34920 vs. ExPASy TrEMBL
Match: A0A6A2YS90 (Transcription initiation factor IIA subunit 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111273pilonHSYRG00172 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 7.9e-63
Identity = 147/273 (53.85%), Postives = 173/273 (63.37%), Query Frame = 0


Query: 9   KIDVMKFYGRINFGLWQVQVKDVLIQSGLHKALKGRP---SEGAS----EKLSGDGGPME 68
           + D+ KF GRINFGLWQVQVKD+LIQSGL+KALKG+P   SEG         SGD G  +
Sbjct: 90  RFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPASLSEGKEPDKPSDSSGDKGKSK 149

Query: 69  SSGGS---------------------------SRTKELWEKLEALYQAKGISNRLYLKEQ 128
            S                              S TKELWEKLE +YQAK +SNRLYLKE+
Sbjct: 150 MSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMYQAKSLSNRLYLKEK 209

Query: 129 FHTLRMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLPPSYEHMKPILMYG 188
           FH L+MEEG KISDHLS LN I+ ELE+I V+IDDEDKALRLI SL  SYEHM+ +LMYG
Sbjct: 210 FHKLQMEEGTKISDHLSALNGIVSELESIGVEIDDEDKALRLIWSLSSSYEHMQTVLMYG 269

Query: 189 KNTLNFAEVTSKLFLEERRLKSEGRTSHEDSALVASNWKKKKDSVQKKACCWGCRQSGHM 247
           K  +NF+EVTSKL  EERRLK+    S E  AL     +KK    +KK  CWGC Q GH+
Sbjct: 270 KENVNFSEVTSKLISEERRLKNGENKSSESGALSVCGNRKKYKGSKKKIICWGCGQPGHL 329

[Close]

BLAST of Moc06g34920 vs. ExPASy TrEMBL
Match: A0A6A3DA47 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00000132pilonHSYRG00093 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 7.9e-63
Identity = 146/272 (53.68%), Postives = 173/272 (63.60%), Query Frame = 0


Query: 9   KIDVMKFYGRINFGLWQVQVKDVLIQSGLHKALKGRPS---EGAS----EKLSGDGGPME 68
           + D+ KF GRINFGLWQVQVKD+LIQSGL+KALKG+P+   EG         SGD G  +
Sbjct: 4   RFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPASLFEGKEPDKPSDSSGDKGKSK 63

Query: 69  SSGGS---------------------------SRTKELWEKLEALYQAKGISNRLYLKEQ 128
            S                              S TKELWEKLE +YQAK +SNRLYLKE+
Sbjct: 64  MSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMYQAKSLSNRLYLKEK 123

Query: 129 FHTLRMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLPPSYEHMKPILMYG 188
           FH L+MEEG KISDHLS LN I+ ELE+I V+IDDEDKALRLI SLP SYEHM+ +LMYG
Sbjct: 124 FHKLQMEEGTKISDHLSALNGIVSELESIGVEIDDEDKALRLIWSLPSSYEHMQTVLMYG 183

Query: 189 KNTLNFAEVTSKLFLEERRLKSEGRTSHEDSALVASNWKKKKDSVQKKACCWGCRQSGHM 246
           K  +NF+EVTSKL  EERRLK+    S E  AL     +KK    ++K  CWGC Q GH+
Sbjct: 184 KENVNFSEVTSKLISEERRLKNGENKSSESGALSVFGNRKKYKGSKRKIICWGCGQPGHL 243

The following BLAST results are available for this feature:

BLAST of Moc06g34920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139673.1	6.6e-104	79.69	uncharacterized protein LOC111010521 [Momordica charantia]	[more]
KAF5765959.1	4.9e-67	56.70	putative RNA-directed DNA polymerase [Helianthus annuus]	[more]
KAF5758504.1	1.9e-66	56.70	putative RNA-directed DNA polymerase [Helianthus annuus]	[more]
KAE8732867.1	6.7e-64	54.58	hypothetical protein F3Y22_tig00001713pilonHSYRG00162 [Hibiscus syriacus]	[more]
QHN81458.1	1.5e-63	56.03	Retrovirus-related Pol polyprotein [Arachis hypogaea]	[more]

BLAST of Moc06g34920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.7e-30	31.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	7.0e-08	23.39	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Moc06g34920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CG82	3.2e-104	79.69	uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6A3CWI3	3.2e-64	54.58	CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0...	[more]
A0A6A3BK59	9.4e-64	54.21	CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0...	[more]
A0A6A2YS90	7.9e-63	53.85	Transcription initiation factor IIA subunit 2 OS=Hibiscus syriacus OX=106335 GN=...	[more]
A0A6A3DA47	7.9e-63	53.68	CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0...	[more]

BLAST of Moc06g34920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 67..176 e-value: 4.5E-30 score: 104.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..67
None	No IPR available	PANTHER	PTHR34676:SF6	SUBFAMILY NOT NAMED	coord: 5..48
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 65..215 coord: 5..48
None	No IPR available	PANTHER	PTHR34676:SF6	SUBFAMILY NOT NAMED	coord: 65..215
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 205..220 score: 9.866995
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 195..226

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g34920.1	Moc06g34920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0008270	zinc ion binding