Moc06g34170 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g34170
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr6: 25889130 .. 25889691 (-)
RNA-Seq ExpressionMoc06g34170
SyntenyMoc06g34170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGATCCCAAAGCAACTTGTCCTAACAATGTGGAGATCCCAAAGCAAGAAGGGGAGCAAAGTGAGGCAATAAGCGTATGGAGTGAGCTCGAACATGACAAAACGGAGCTCCTAGTAGACAACGATGACCCACCATCCCCTAATGTGATGAACGAGGTAGGGAATTATAAGGAAGTTGAACAAAAGCAACCAGTACAGGTAATTGAGCATAAAGTTGCAAAGGACCAAAACCCATCACCTCTCAATATTGGACCGCTTTTTTCTTTCCCTCGACTTTCTTTGGATACAAATCAAGATATAAAGAAGGGAGAGTTGACCACACCTTTCAAGGATAAAATGGAGGAAGAAATAAGAGAAGATGAGGTAGGTTCAGATGAAGAATTTTATGCAGAAGCAACAACCAAAATTCCACTTTTAAAAGAACAAATTCATACAAGTAAGTCAACTCCCTCTCAAACTGAACCTTGAAGCATATTGTGCTTTGAAGAAGAGAAACCGCGACATGACAGTAGAAGAAGAGAGGTCGAATGAGCTTGATTGGAATGACACCCTTTTGTGA

mRNA sequence

ATGATAGATCCCAAAGCAACTTGTCCTAACAATGTGGAGATCCCAAAGCAAGAAGGGGAGCAAAGTGAGGCAATAAGCGTATGGAGTGAGCTCGAACATGACAAAACGGAGCTCCTAGTAGACAACGATGACCCACCATCCCCTAATGTGATGAACGAGGTAGGGAATTATAAGGAAGTTGAACAAAAGCAACCAGTACAGGTAATTGAGCATAAAGTTGCAAAGGACCAAAACCCATCACCTCTCAATATTGGACCGCTTTTTTCTTTCCCTCGACTTTCTTTGGATACAAATCAAGATATAAAGAAGGGAGAGTTGACCACACCTTTCAAGGATAAAATGGAGGAAGAAATAAGAGAAGATGAGAAGAGAAACCGCGACATGACAGTAGAAGAAGAGAGGTCGAATGAGCTTGATTGGAATGACACCCTTTTGTGA

Coding sequence (CDS)

ATGATAGATCCCAAAGCAACTTGTCCTAACAATGTGGAGATCCCAAAGCAAGAAGGGGAGCAAAGTGAGGCAATAAGCGTATGGAGTGAGCTCGAACATGACAAAACGGAGCTCCTAGTAGACAACGATGACCCACCATCCCCTAATGTGATGAACGAGGTAGGGAATTATAAGGAAGTTGAACAAAAGCAACCAGTACAGGTAATTGAGCATAAAGTTGCAAAGGACCAAAACCCATCACCTCTCAATATTGGACCGCTTTTTTCTTTCCCTCGACTTTCTTTGGATACAAATCAAGATATAAAGAAGGGAGAGTTGACCACACCTTTCAAGGATAAAATGGAGGAAGAAATAAGAGAAGATGAGAAGAGAAACCGCGACATGACAGTAGAAGAAGAGAGGTCGAATGAGCTTGATTGGAATGACACCCTTTTGTGA

Protein sequence

MIDPKATCPNNVEIPKQEGEQSEAISVWSELEHDKTELLVDNDDPPSPNVMNEVGNYKEVEQKQPVQVIEHKVAKDQNPSPLNIGPLFSFPRLSLDTNQDIKKGELTTPFKDKMEEEIREDEKRNRDMTVEEERSNELDWNDTLL
Homology
BLAST of Moc06g34170 vs. NCBI nr
Match: XP_022149401.1 (uncharacterized protein LOC111017826 [Momordica charantia])

HSP 1 Score: 119.4 bits (298), Expect = 2.6e-23
Identity = 61/94 (64.89%), Postives = 75/94 (79.79%), Query Frame = 0

Query: 29  SELEHDKTELLVDNDDPPSPNVMNEVGNYKEVEQKQPVQVIEHKVAKDQNPSPLNIGPLF 88
           SELE+D+ ELLVDNDDPP+P VMNEV   K+VE+++P++VIEHKVA D +PSPL IGP F
Sbjct: 20  SELEYDEPELLVDNDDPPTPEVMNEVWKNKKVEEEEPIEVIEHKVAIDLSPSPLKIGPFF 79

Query: 89  SFPRLSLDTNQDIKKGELTTPFKDKMEEEIREDE 123
            FP+ SL+ N DIKK ELT  F DK++ EI EDE
Sbjct: 80  PFPQRSLEINNDIKKEELTQHFNDKIKGEIGEDE 113

BLAST of Moc06g34170 vs. NCBI nr
Match: XP_022157694.1 (uncharacterized protein LOC111024352 [Momordica charantia])

HSP 1 Score: 112.8 bits (281), Expect = 2.4e-21
Identity = 73/180 (40.56%), Postives = 96/180 (53.33%), Query Frame = 0

Query: 1   MIDPKATCPNNVEIPKQEGEQSEAISVWSELEHDKTELLVDNDDPPSPNVMNEVGNYKEV 60
           M+D     P+   +P    EQ EA +  SELE D+ EL +DNDDPP P V+NEV   KEV
Sbjct: 38  MVDELRNSPSEA-LPTNMEEQGEAFNERSELEDDELELPIDNDDPPIPEVINEVWKNKEV 97

Query: 61  EQKQPVQVIEHKVAKDQNPSPLNIGPLFSFPRLSLDTNQDIKKGELTTPFKDKMEEEIRE 120
           E ++P++V+EH++  D NPSPLNIGPLF FPR SL+  Q I+K ELT P +D++  E+ E
Sbjct: 98  EPEKPIEVMEHELTMDLNPSPLNIGPLFPFPRCSLEITQYIQKEELTKPVEDQVNGELGE 157

Query: 121 D-----------------------------------------EKRNRDMTVEEERSNELD 140
           D                                         ++RN DM V EERSN L+
Sbjct: 158 DVIGSDEGFYVKVSSQIPIFKNQCIQVSHLPLELDLKAYCALKERNFDMVVAEERSNVLE 216

BLAST of Moc06g34170 vs. ExPASy TrEMBL
Match: A0A6J1D894 (uncharacterized protein LOC111017826 OS=Momordica charantia OX=3673 GN=LOC111017826 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 61/94 (64.89%), Postives = 75/94 (79.79%), Query Frame = 0

Query: 29  SELEHDKTELLVDNDDPPSPNVMNEVGNYKEVEQKQPVQVIEHKVAKDQNPSPLNIGPLF 88
           SELE+D+ ELLVDNDDPP+P VMNEV   K+VE+++P++VIEHKVA D +PSPL IGP F
Sbjct: 20  SELEYDEPELLVDNDDPPTPEVMNEVWKNKKVEEEEPIEVIEHKVAIDLSPSPLKIGPFF 79

Query: 89  SFPRLSLDTNQDIKKGELTTPFKDKMEEEIREDE 123
            FP+ SL+ N DIKK ELT  F DK++ EI EDE
Sbjct: 80  PFPQRSLEINNDIKKEELTQHFNDKIKGEIGEDE 113

BLAST of Moc06g34170 vs. ExPASy TrEMBL
Match: A0A6J1DXA5 (uncharacterized protein LOC111024352 OS=Momordica charantia OX=3673 GN=LOC111024352 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.2e-21
Identity = 73/180 (40.56%), Postives = 96/180 (53.33%), Query Frame = 0

Query: 1   MIDPKATCPNNVEIPKQEGEQSEAISVWSELEHDKTELLVDNDDPPSPNVMNEVGNYKEV 60
           M+D     P+   +P    EQ EA +  SELE D+ EL +DNDDPP P V+NEV   KEV
Sbjct: 38  MVDELRNSPSEA-LPTNMEEQGEAFNERSELEDDELELPIDNDDPPIPEVINEVWKNKEV 97

Query: 61  EQKQPVQVIEHKVAKDQNPSPLNIGPLFSFPRLSLDTNQDIKKGELTTPFKDKMEEEIRE 120
           E ++P++V+EH++  D NPSPLNIGPLF FPR SL+  Q I+K ELT P +D++  E+ E
Sbjct: 98  EPEKPIEVMEHELTMDLNPSPLNIGPLFPFPRCSLEITQYIQKEELTKPVEDQVNGELGE 157

Query: 121 D-----------------------------------------EKRNRDMTVEEERSNELD 140
           D                                         ++RN DM V EERSN L+
Sbjct: 158 DVIGSDEGFYVKVSSQIPIFKNQCIQVSHLPLELDLKAYCALKERNFDMVVAEERSNVLE 216

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022149401.12.6e-2364.89uncharacterized protein LOC111017826 [Momordica charantia][more]
XP_022157694.12.4e-2140.56uncharacterized protein LOC111024352 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D8941.2e-2364.89uncharacterized protein LOC111017826 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A6J1DXA51.2e-2140.56uncharacterized protein LOC111024352 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 111..131
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g34170.1Moc06g34170.1mRNA