Moc06g33390 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g33390
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	arabinogalactan peptide 22-like
Location	chr6: 25335336 .. 25335672 (-)
RNA-Seq Expression	Moc06g33390
Synteny	Moc06g33390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGTGGCGGTTCGAAATTACCTCCCATTGGGAATTTTGGTTGCTGTTGCTGTAGCCTTTGTTTTGGGTGCCTTTTTGCCGGTTCAAGCTCATGCTCAACCCGAGTCAATGTCTCCAGCCCAACCCCTTGCTACTAGCGATGGTTAGTTTCTAAAACCTCCTCAAACAAGTAACACGAAATGGAAACATTATCAAATGAATTTTAACGGAATAATAAATGTTATTTGCAGGGACGAGCATAGATCAAGGGATTGCGTATGCATTAATGTTGTTGGCCTTGGTTCTCACTTACATTATCCATTCAGCTGACCTCTCTATCAGTTTTTCAACTTGA

mRNA sequence

ATGGTAGTGGCGGTTCGAAATTACCTCCCATTGGGAATTTTGGTTGCTGTTGCTGTAGCCTTTGTTTTGGGTGCCTTTTTGCCGGTTCAAGCTCATGCTCAACCCGAGTCAATGTCTCCAGCCCAACCCCTTGCTACTAGCGATGGGACGAGCATAGATCAAGGGATTGCGTATGCATTAATGTTGTTGGCCTTGGTTCTCACTTACATTATCCATTCAGCTGACCTCTCTATCAGTTTTTCAACTTGA

Coding sequence (CDS)

ATGGTAGTGGCGGTTCGAAATTACCTCCCATTGGGAATTTTGGTTGCTGTTGCTGTAGCCTTTGTTTTGGGTGCCTTTTTGCCGGTTCAAGCTCATGCTCAACCCGAGTCAATGTCTCCAGCCCAACCCCTTGCTACTAGCGATGGGACGAGCATAGATCAAGGGATTGCGTATGCATTAATGTTGTTGGCCTTGGTTCTCACTTACATTATCCATTCAGCTGACCTCTCTATCAGTTTTTCAACTTGA

Protein sequence

MVVAVRNYLPLGILVAVAVAFVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISFST

Homology

[Close]

BLAST of Moc06g33390 vs. NCBI nr
Match: XP_022146078.1 (arabinogalactan peptide 22-like [Momordica charantia])

HSP 1 Score: 147.5 bits (371), Expect = 5.0e-32
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MVVAVRNYLPLGILVAVAVAFVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYAL 60
          MVVAVRNYLPLGILVAVAVAFVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYAL
Sbjct: 1  MVVAVRNYLPLGILVAVAVAFVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYAL 60

Query: 61 MLLALVLTYIIHSADLSISFST 83
          MLLALVLTYIIHSADLSISFST
Sbjct: 61 MLLALVLTYIIHSADLSISFST 82

[Close]

BLAST of Moc06g33390 vs. NCBI nr
Match: KAG6579545.1 (Arabinogalactan protein 16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.6 bits (200), Expect = 3.4e-12
Identity = 50/79 (63.29%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 2  VVAVRNYLPLGILVAVAVAFVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYALM 61
          +  V N +P G+   + V FVL   LP  A    +S++PAQP A SDGTSIDQGIAY LM
Sbjct: 1  MAVVANKIPFGVF--IGVVFVLAMLLPACA----QSLAPAQPPAASDGTSIDQGIAYVLM 60

Query: 62 LLALVLTYIIHSADLSISF 81
          LLALVLTYIIHSADLSISF
Sbjct: 61 LLALVLTYIIHSADLSISF 73

[Close]

BLAST of Moc06g33390 vs. NCBI nr
Match: KAG7017004.1 (Arabinogalactan peptide 16 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 80.1 bits (196), Expect = 9.8e-12
Identity = 50/79 (63.29%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 2  VVAVRNYLPLGILVAVAVAFVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYALM 61
          +  V N +P G+     V FVL   LP  A    +S++PAQP A SDGTSIDQGIAY LM
Sbjct: 1  MAVVANKIPFGVF--FGVVFVLAMILPACA----QSLAPAQPPAASDGTSIDQGIAYVLM 60

Query: 62 LLALVLTYIIHSADLSISF 81
          LLALVLTYIIHSADLSISF
Sbjct: 61 LLALVLTYIIHSADLSISF 73

[Close]

BLAST of Moc06g33390 vs. NCBI nr
Match: XP_023532560.1 (arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 74.7 bits (182), Expect = 4.1e-10
Identity = 49/79 (62.03%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 1  MVVAVRNYLPLGILVAVAVAFVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYAL 60
          M V   N +P G+L  VAVAFVL    P  A A   S+SPAQP   SDGTS+DQGIAY L
Sbjct: 1  MEVVAYNKVPYGVL--VAVAFVLAMLFP--ASAADPSLSPAQPPIASDGTSLDQGIAYVL 60

Query: 61 MLLALVLTYIIHSADLSIS 80
          MLLAL+LTYIIH A+L IS
Sbjct: 61 MLLALLLTYIIHLAELPIS 75

[Close]

BLAST of Moc06g33390 vs. NCBI nr
Match: XP_004143956.1 (arabinogalactan protein 41 [Cucumis sativus] >KGN50035.1 hypothetical protein Csa_000543 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 7.0e-10
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 0


Query: 19 VAFVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYALMLLALVLTYIIHSADLSI 78
          + FV+   L   + A  +S+SPAQP AT DGTSIDQGIAY LMLLALVLTYIIHSADL +
Sbjct: 13 ILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYV 72

Query: 79 S 80
          S
Sbjct: 73 S 73

[Close]

BLAST of Moc06g33390 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.2e-08
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 26 FLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISFS 82
          F  + + A  +S++PA P  TSDGTSIDQGIAY LM++ALVLTY+IH  D S S+S
Sbjct: 17 FAVILSLAGAQSLAPA-PAPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDASSSYS 71

[Close]

BLAST of Moc06g33390 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.4e-07
Identity = 37/68 (54.41%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 15 VAVAVAFVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYALMLLALVLTYIIHSA 74
          VAV   F    F  +   A  +S++PA P  TSDGTSIDQGIAY LM++ALVLTY+IH  
Sbjct: 7  VAVIALFAF-VFAVISPFAGAQSLAPA-PSPTSDGTSIDQGIAYLLMVVALVLTYLIHPL 66

Query: 75 DLSISFST 83
          D S S  T
Sbjct: 67 DASSSSYT 72

[Close]

BLAST of Moc06g33390 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.4e-07
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 15 VAVAVAFVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYALMLLALVLTYIIH 73
          V+  V+ +    LP+ AHAQ  S +PA P  TSDGT+IDQGIAY LML+ALVLTY+IH
Sbjct: 10 VSTIVSIIFAILLPM-AHAQ--SAAPA-PAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]

BLAST of Moc06g33390 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.9e-06
Identity = 36/63 (57.14%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 10 PLGILVAVAVAFVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYALMLLALVLTY 69
          PL IL    +  V+   LP+   AQ  S SPA P  TSDGTSIDQGIAY LM++AL LTY
Sbjct: 7  PLEILAVFVIISVI--LLPI---AQSHSSSPA-PAPTSDGTSIDQGIAYVLMMVALALTY 63

Query: 70 IIH 73
           IH
Sbjct: 67 FIH 63

[Close]

BLAST of Moc06g33390 vs. ExPASy TrEMBL
Match: A0A6J1CXM0 (arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111015367 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.4e-32
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MVVAVRNYLPLGILVAVAVAFVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYAL 60
          MVVAVRNYLPLGILVAVAVAFVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYAL
Sbjct: 1  MVVAVRNYLPLGILVAVAVAFVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYAL 60

Query: 61 MLLALVLTYIIHSADLSISFST 83
          MLLALVLTYIIHSADLSISFST
Sbjct: 61 MLLALVLTYIIHSADLSISFST 82

[Close]

BLAST of Moc06g33390 vs. ExPASy TrEMBL
Match: A0A0A0KK44 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151510 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.4e-10
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 0


Query: 19 VAFVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYALMLLALVLTYIIHSADLSI 78
          + FV+   L   + A  +S+SPAQP AT DGTSIDQGIAY LMLLALVLTYIIHSADL +
Sbjct: 13 ILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYV 72

Query: 79 S 80
          S
Sbjct: 73 S 73

[Close]

BLAST of Moc06g33390 vs. ExPASy TrEMBL
Match: A0A5D3C2F1 (Arabinogalactan peptide 22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G002020 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.4e-10
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 19 VAFVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYALMLLALVLTYIIHSADLSI 78
          + FV+   L   + A  +S+SPAQP ATSDGTSIDQGIAYALMLLALVLTYIIHSAD  +
Sbjct: 13 ILFVVALVLTRLSPACAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADRYV 72

Query: 79 S 80
          S
Sbjct: 73 S 73

[Close]

BLAST of Moc06g33390 vs. ExPASy TrEMBL
Match: A0A1S3ATI9 (arabinogalactan peptide 22-like OS=Cucumis melo OX=3656 GN=LOC103482805 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.4e-10
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 19 VAFVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYALMLLALVLTYIIHSADLSI 78
          + FV+   L   + A  +S+SPAQP ATSDGTSIDQGIAYALMLLALVLTYIIHSAD  +
Sbjct: 13 ILFVVALVLTRLSPACAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADRYV 72

Query: 79 S 80
          S
Sbjct: 73 S 73

[Close]

BLAST of Moc06g33390 vs. ExPASy TrEMBL
Match: A0A6J1K4A3 (arabinogalactan peptide 22-like OS=Cucurbita maxima OX=3661 GN=LOC111491553 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.6e-10
Identity = 46/71 (64.79%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 9  LPLGILVAVAVAFVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYALMLLALVLT 68
          +P G+L  VAVAFVL    P  A A   S+SPAQP   SDGTS+DQGIAY LMLLAL+LT
Sbjct: 9  VPYGVL--VAVAFVLAMLFP--ASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLT 68

Query: 69 YIIHSADLSIS 80
          YIIH A+L IS
Sbjct: 69 YIIHLAELPIS 75

[Close]

BLAST of Moc06g33390 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 )

HSP 1 Score: 58.2 bits (139), Expect = 3.7e-09
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 26 FLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISFS 82
          F  + + A  +S++PA P  TSDGTSIDQGIAY LM++ALVLTY+IH  D S S+S
Sbjct: 17 FAVILSLAGAQSLAPA-PAPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDASSSYS 71

[Close]

BLAST of Moc06g33390 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 )

HSP 1 Score: 55.1 bits (131), Expect = 3.1e-08
Identity = 37/68 (54.41%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 15 VAVAVAFVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYALMLLALVLTYIIHSA 74
          VAV   F    F  +   A  +S++PA P  TSDGTSIDQGIAY LM++ALVLTY+IH  
Sbjct: 7  VAVIALFAF-VFAVISPFAGAQSLAPA-PSPTSDGTSIDQGIAYLLMVVALVLTYLIHPL 66

Query: 75 DLSISFST 83
          D S S  T
Sbjct: 67 DASSSSYT 72

[Close]

BLAST of Moc06g33390 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 )

HSP 1 Score: 55.1 bits (131), Expect = 3.1e-08
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 15 VAVAVAFVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYALMLLALVLTYIIH 73
          V+  V+ +    LP+ AHAQ  S +PA P  TSDGT+IDQGIAY LML+ALVLTY+IH
Sbjct: 10 VSTIVSIIFAILLPM-AHAQ--SAAPA-PAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]

BLAST of Moc06g33390 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 )

HSP 1 Score: 52.4 bits (124), Expect = 2.0e-07
Identity = 36/63 (57.14%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 10 PLGILVAVAVAFVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYALMLLALVLTY 69
          PL IL    +  V+   LP+   AQ  S SPA P  TSDGTSIDQGIAY LM++AL LTY
Sbjct: 7  PLEILAVFVIISVI--LLPI---AQSHSSSPA-PAPTSDGTSIDQGIAYVLMMVALALTY 63

Query: 70 IIH 73
           IH
Sbjct: 67 FIH 63

The following BLAST results are available for this feature:

BLAST of Moc06g33390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146078.1	5.0e-32	100.00	arabinogalactan peptide 22-like [Momordica charantia]	[more]
KAG6579545.1	3.4e-12	63.29	Arabinogalactan protein 16, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7017004.1	9.8e-12	63.29	Arabinogalactan peptide 16 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023532560.1	4.1e-10	62.03	arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo]	[more]
XP_004143956.1	7.0e-10	67.21	arabinogalactan protein 41 [Cucumis sativus] >KGN50035.1 hypothetical protein Cs...	[more]

BLAST of Moc06g33390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82337	5.2e-08	58.93	Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1	[more]
Q9M373	4.4e-07	54.41	Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1	[more]
Q8L9T8	4.4e-07	60.34	Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1	[more]
Q9FK16	2.9e-06	57.14	Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1	[more]

BLAST of Moc06g33390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CXM0	2.4e-32	100.00	arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111015367 P...	[more]
A0A0A0KK44	3.4e-10	67.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151510 PE=4 SV=1	[more]
A0A5D3C2F1	4.4e-10	68.85	Arabinogalactan peptide 22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3ATI9	4.4e-10	68.85	arabinogalactan peptide 22-like OS=Cucumis melo OX=3656 GN=LOC103482805 PE=4 SV=...	[more]
A0A6J1K4A3	7.6e-10	64.79	arabinogalactan peptide 22-like OS=Cucurbita maxima OX=3661 GN=LOC111491553 PE=4...	[more]

BLAST of Moc06g33390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46330.1	3.7e-09	58.93	arabinogalactan protein 16	[more]
AT3G61640.1	3.1e-08	54.41	arabinogalactan protein 20	[more]
AT5G24105.1	3.1e-08	60.34	arabinogalactan protein 41	[more]
AT5G53250.1	2.0e-07	57.14	arabinogalactan protein 22	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan protein 16/20/22/41	PFAM	PF06376	AGP	coord: 39..72 e-value: 3.1E-16 score: 58.9
IPR009424	Arabinogalactan protein 16/20/22/41	PANTHER	PTHR33374	ARABINOGALACTAN PROTEIN 20	coord: 14..79
None	No IPR available	PANTHER	PTHR33374:SF38	ARABINOGALACTAN PROTEIN 41	coord: 14..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g33390.1	Moc06g33390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane