Moc06g32040 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g32040
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Locationchr6: 24138244 .. 24138655 (+)
RNA-Seq ExpressionMoc06g32040
SyntenyMoc06g32040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTGTGTTCTCGACAACAAAGAGCGGGTTGGCCAGGGTATGGTTTTGATAGTTGAAGCGAGATTCGATCTCGAGCTTCAAGAGCCTGGCTAGGGCATTTGTGACCCAGTTCGTAGGAGGACGAAGCCGAAGCCGACTCGTGGCTTATCTTCTGACCATCAAACAGAGAGCAACAGAAAGCTTGCACGACTATGTGGCTCAGTTTAATGAAGAGAAATTACAGGCTAAGGGTCTCACGGATGCAGTGTCTCTACTAGCATTCATGTCCGGCATCAGGGATAAACACCTCTCATTCTCTTTTGGGAAAAAGTCGCCGAGCACCTTCGGAGGCGTTGAGCCGAGCACAGAAATATATGAGCACCAGAAAGTTCTTCCACTCGATGAAAGAGCCAGAGGGAAAACGATCTGA

mRNA sequence

ATGTCGTGTGTTCTCGACAACAAAGAGCGGGTTGGCCAGGGAGGACGAAGCCGAAGCCGACTCGTGGCTTATCTTCTGACCATCAAACAGAGAGCAACAGAAAGCTTGCACGACTATGTGGCTCAGTTTAATGAAGAGAAATTACAGGCTAAGGGTCTCACGGATGCAGTGTCTCTACTAGCATTCATGTCCGGCATCAGGGATAAACACCTCTCATTCTCTTTTGGGAAAAAGTCGCCGAGCACCTTCGGAGGCGTTGAGCCGAGCACAGAAATATATGAGCACCAGAAAGTTCTTCCACTCGATGAAAGAGCCAGAGGGAAAACGATCTGA

Coding sequence (CDS)

ATGTCGTGTGTTCTCGACAACAAAGAGCGGGTTGGCCAGGGAGGACGAAGCCGAAGCCGACTCGTGGCTTATCTTCTGACCATCAAACAGAGAGCAACAGAAAGCTTGCACGACTATGTGGCTCAGTTTAATGAAGAGAAATTACAGGCTAAGGGTCTCACGGATGCAGTGTCTCTACTAGCATTCATGTCCGGCATCAGGGATAAACACCTCTCATTCTCTTTTGGGAAAAAGTCGCCGAGCACCTTCGGAGGCGTTGAGCCGAGCACAGAAATATATGAGCACCAGAAAGTTCTTCCACTCGATGAAAGAGCCAGAGGGAAAACGATCTGA

Protein sequence

MSCVLDNKERVGQGGRSRSRLVAYLLTIKQRATESLHDYVAQFNEEKLQAKGLTDAVSLLAFMSGIRDKHLSFSFGKKSPSTFGGVEPSTEIYEHQKVLPLDERARGKTI
Homology
[Close]
BLAST of Moc06g32040 vs. NCBI nr
Match: XP_022150035.1 (uncharacterized protein LOC111018307 [Momordica charantia])

HSP 1 Score: 122.9 bits (307), Expect = 1.8e-24
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = 0 

Query: 14  GGRSRSRLVAYLLTIKQRATESLHDYVAQFNEEKLQAKGLTDAVSLLAFMSGIRDKHLSF 73
           GGRSRSR VAYLLTIKQRATESLHDYVA+FNEEKLQ +GLT+AVSL+AFMS IRD+HLSF
Sbjct: 88  GGRSRSRPVAYLLTIKQRATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSF 147

Query: 74  SFGKKSPSTF 84
           SFGKK+PSTF
Sbjct: 148 SFGKKTPSTF 157

[Close]
BLAST of Moc06g32040 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 119.0 bits (297), Expect = 2.6e-23
Identity = 58/70 (82.86%), Postives = 65/70 (92.86%), Query Frame = 0 

Query: 14  GGRSRSRLVAYLLTIKQRATESLHDYVAQFNEEKLQAKGLTDAVSLLAFMSGIRDKHLSF 73
           GGR RSR VAYLLTIKQR TESL DYVA+FNEEKLQ +GLTDAVSLLAFMSG+RD+HLSF
Sbjct: 268 GGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSF 327

Query: 74  SFGKKSPSTF 84
           SFGK++P+TF
Sbjct: 328 SFGKRTPNTF 337

[Close]
BLAST of Moc06g32040 vs. NCBI nr
Match: XP_022159368.1 (uncharacterized protein LOC111025785 [Momordica charantia])

HSP 1 Score: 118.6 bits (296), Expect = 3.3e-23
Identity = 58/70 (82.86%), Postives = 64/70 (91.43%), Query Frame = 0 

Query: 14  GGRSRSRLVAYLLTIKQRATESLHDYVAQFNEEKLQAKGLTDAVSLLAFMSGIRDKHLSF 73
           GGR RSR VAYLLTIKQR TESLHDYVA+FN+EKLQ + LTD VSLLAFMSG+RD+HLSF
Sbjct: 52  GGRCRSRPVAYLLTIKQRTTESLHDYVARFNKEKLQIESLTDVVSLLAFMSGVRDEHLSF 111

Query: 74  SFGKKSPSTF 84
           SFGKK+PSTF
Sbjct: 112 SFGKKTPSTF 121

[Close]
BLAST of Moc06g32040 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 117.9 bits (294), Expect = 5.7e-23
Identity = 58/70 (82.86%), Postives = 64/70 (91.43%), Query Frame = 0 

Query: 14  GGRSRSRLVAYLLTIKQRATESLHDYVAQFNEEKLQAKGLTDAVSLLAFMSGIRDKHLSF 73
           GGR RSR VAYLLTIKQR  ESLHDYVA+FNEEKLQ +GLTDAVSLLAFMSG+RD+HLSF
Sbjct: 173 GGRCRSRPVAYLLTIKQRTAESLHDYVARFNEEKLQLEGLTDAVSLLAFMSGVRDEHLSF 232

Query: 74  SFGKKSPSTF 84
           SF K++PSTF
Sbjct: 233 SFEKRTPSTF 242

[Close]
BLAST of Moc06g32040 vs. NCBI nr
Match: XP_022158344.1 (uncharacterized protein LOC111024851 [Momordica charantia])

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-18
Identity = 48/70 (68.57%), Postives = 62/70 (88.57%), Query Frame = 0 

Query: 14  GGRSRSRLVAYLLTIKQRATESLHDYVAQFNEEKLQAKGLTDAVSLLAFMSGIRDKHLSF 73
           GGR +S+ V YLLTIKQ+ATESL +YVA+FNEEKLQ +GLTDAV+L+AF+SG++D+ L F
Sbjct: 84  GGRVKSKPVTYLLTIKQKATESLKEYVARFNEEKLQVEGLTDAVALIAFVSGVKDERLVF 143

Query: 74  SFGKKSPSTF 84
           SFGK++P TF
Sbjct: 144 SFGKRTPGTF 153

[Close]
BLAST of Moc06g32040 vs. ExPASy TrEMBL
Match: A0A6J1D7D2 (uncharacterized protein LOC111018307 OS=Momordica charantia OX=3673 GN=LOC111018307 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 8.6e-25
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = 0 

Query: 14  GGRSRSRLVAYLLTIKQRATESLHDYVAQFNEEKLQAKGLTDAVSLLAFMSGIRDKHLSF 73
           GGRSRSR VAYLLTIKQRATESLHDYVA+FNEEKLQ +GLT+AVSL+AFMS IRD+HLSF
Sbjct: 88  GGRSRSRPVAYLLTIKQRATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSF 147

Query: 74  SFGKKSPSTF 84
           SFGKK+PSTF
Sbjct: 148 SFGKKTPSTF 157

[Close]
BLAST of Moc06g32040 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.2e-23
Identity = 58/70 (82.86%), Postives = 65/70 (92.86%), Query Frame = 0 

Query: 14  GGRSRSRLVAYLLTIKQRATESLHDYVAQFNEEKLQAKGLTDAVSLLAFMSGIRDKHLSF 73
           GGR RSR VAYLLTIKQR TESL DYVA+FNEEKLQ +GLTDAVSLLAFMSG+RD+HLSF
Sbjct: 268 GGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSF 327

Query: 74  SFGKKSPSTF 84
           SFGK++P+TF
Sbjct: 328 SFGKRTPNTF 337

[Close]
BLAST of Moc06g32040 vs. ExPASy TrEMBL
Match: A0A6J1DYL6 (uncharacterized protein LOC111025785 OS=Momordica charantia OX=3673 GN=LOC111025785 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.6e-23
Identity = 58/70 (82.86%), Postives = 64/70 (91.43%), Query Frame = 0 

Query: 14  GGRSRSRLVAYLLTIKQRATESLHDYVAQFNEEKLQAKGLTDAVSLLAFMSGIRDKHLSF 73
           GGR RSR VAYLLTIKQR TESLHDYVA+FN+EKLQ + LTD VSLLAFMSG+RD+HLSF
Sbjct: 52  GGRCRSRPVAYLLTIKQRTTESLHDYVARFNKEKLQIESLTDVVSLLAFMSGVRDEHLSF 111

Query: 74  SFGKKSPSTF 84
           SFGKK+PSTF
Sbjct: 112 SFGKKTPSTF 121

[Close]
BLAST of Moc06g32040 vs. ExPASy TrEMBL
Match: A0A6J1E1E7 (uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025548 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.8e-23
Identity = 58/70 (82.86%), Postives = 64/70 (91.43%), Query Frame = 0 

Query: 14  GGRSRSRLVAYLLTIKQRATESLHDYVAQFNEEKLQAKGLTDAVSLLAFMSGIRDKHLSF 73
           GGR RSR VAYLLTIKQR  ESLHDYVA+FNEEKLQ +GLTDAVSLLAFMSG+RD+HLSF
Sbjct: 173 GGRCRSRPVAYLLTIKQRTAESLHDYVARFNEEKLQLEGLTDAVSLLAFMSGVRDEHLSF 232

Query: 74  SFGKKSPSTF 84
           SF K++PSTF
Sbjct: 233 SFEKRTPSTF 242

[Close]
BLAST of Moc06g32040 vs. ExPASy TrEMBL
Match: A0A6J1DZ49 (uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024851 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 9.2e-19
Identity = 48/70 (68.57%), Postives = 62/70 (88.57%), Query Frame = 0 

Query: 14  GGRSRSRLVAYLLTIKQRATESLHDYVAQFNEEKLQAKGLTDAVSLLAFMSGIRDKHLSF 73
           GGR +S+ V YLLTIKQ+ATESL +YVA+FNEEKLQ +GLTDAV+L+AF+SG++D+ L F
Sbjct: 84  GGRVKSKPVTYLLTIKQKATESLKEYVARFNEEKLQVEGLTDAVALIAFVSGVKDERLVF 143

Query: 74  SFGKKSPSTF 84
           SFGK++P TF
Sbjct: 144 SFGKRTPGTF 153

The following BLAST results are available for this feature:
BLAST of Moc06g32040 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022150035.11.8e-2487.14uncharacterized protein LOC111018307 [Momordica charantia][more]
XP_022158830.12.6e-2382.86uncharacterized protein LOC111025293 [Momordica charantia][more]
XP_022159368.13.3e-2382.86uncharacterized protein LOC111025785 [Momordica charantia][more]
XP_022159109.15.7e-2382.86uncharacterized protein LOC111025548 [Momordica charantia][more]
XP_022158344.11.9e-1868.57uncharacterized protein LOC111024851 [Momordica charantia][more]
BLAST of Moc06g32040 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc06g32040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D7D28.6e-2587.14uncharacterized protein LOC111018307 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1DWY01.2e-2382.86uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DYL61.6e-2382.86uncharacterized protein LOC111025785 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1E1E72.8e-2382.86uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DZ499.2e-1968.57uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
BLAST of Moc06g32040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g32040.1Moc06g32040.1mRNA