Moc06g30860 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g30860
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr6: 23247281 .. 23249681 (+)
RNA-Seq Expression	Moc06g30860
Synteny	Moc06g30860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTTTCTGATTTTGATAACTCGGCTCAATTGTTTGAATTACGCAATAAGGCACATTCCTTACGACAAGGTGAATCCGATGTCACCCAATACTACAGCTCATTACGTAGGTTGTGGGCTGAACTTGATTTATGTCTCAATCTCGAATGGGAGAACTCGAAGGATGCTGAACGCTTCCGCAAACATGTCGAGAAGGAACGAATTTATGATTTTCTTGCAGGTATTCGTCCGGAATTAGATGATGTGCGTGGCCGCTTACTTGCCACAAAGCCAATCCCAGCCATTGACGAAATCTTCGCAGAAGTTCGCTGGGAGTCAAGCCGTAAACGTGTGATGATGGGTGATACACATACAAAACCTTTGTCCCTCTCACTGGAATCATCAGCTCTGGCGGCACGAGGTCCACCACCACCTTCATCCCGATCTACTCGTCGGAACAACCTATGGTGTGATCATTGTAAGCGCACAAACCATACAAAAGATCAGTGTTGGGAATTCCATGGTCGTCCTCAACGGAAGAATTTATCAGGGGATTATCGGCCACCTCCACCTACAAATACTCCATCTTCTCGAACTAGCTCCTCCGGCTATCAAGTGGGCCCTAGTATGTCAAACTCCCAAGATTTGGCCACCTCTCTCCCTCCATTTTCGAAGGCACAACTTGAACAGCTCTATCGCCTCTTAACACCGCCGGTTGAGTCTACTCCTTCGTCAAGTTTTGTGGCACAACGAGGTATTTTTAGTGCAGCTTTAACAAGTCAGCAGCATTCCGATCAGTGGATCTTAGATTCAGGTGCAACTGATCATATGACCGCTTTTCATGATATGTTTACCATGTACTCACCCAACCCGATTCAGACACATGTCAAGCTTGCAGATGGGTCATCGGCCATTATTAAGGGCTTTGGTTCTGTTATTCTTAGCCCAAACATTACATTGCACTCAGTGCTCCATGTGCCTAAATTATATTGCAATCTAATTTTTGTTCAGAAGTTGACTCATGATTTAAAGTGTCAAGCCCTGTTCACTGACTCTAAGTGTTTGTTTCAGGACTTGATAACGGGAACGACGATTGGCAATGCTGATGGCTTTGAAGGGCTCTACTACTTCAGAGGACCAAGTCTAAGAAATAAACAAGTTCTTCAGGTTGGTAGTGAGTCGAATTCTAGGGAACAACAAATTCTACTTTTACATCGCCGTTTAGGGCACCCGAGTTTTCAGTATCTTAAACATTTGTACCCTTCACTTTTTCATAAAGATGACCTTTTTACTTGCGAAGTGTGTCAACTTGCAAAACACTCTCGTACATCTTATCCTTCTGTTGAGTATATACCATCCAGTCCATTCACAATGATTCATAGTGATTTATGGGGGTCGTCTCGCATCAAAACTATGTCCGATAAACGTTGGTTCCTTATCTTCACTGATGACCACACTAGGGTTTGTTGGTCTATTTACTTAAAGAAAAATCACATCAATCTTTCAACAGTTTCATTCTCTCATTCATAATCAATTTAATACGAGAATCAAAATTCTTCGCACATATAAGGGGACAGAATATTTCAATCAAATATTGGGAACTTTCCTGTCTCAAAATGGAATCATTCACCAAAGTTCCTGTGTCATTACCCCCCAACAAAATGGTATAGCTGAAAGGAAAAATAGGCATCTTTTAGAAACTGCTCGTGCTCTCATGTTCACCAATTCTGTTCTTAACTATTTTTGGGGTGATGCTGTCCTTACTGCTTGTTATCTCATTAATTGGATGCCCTCTCGTGTTCTGAAATTTAACACTCCACTAGAAATCTTACTCACTATCTATCCGCAAATCCGATCTGTCCTCACAATTCCCCTCAAAATATTTGGATGTACTGCATTCACTCATGTTTATGATCATGAACGTCACAAATTGGAGCCAAAAGCCAGAAAGTGTGTCTTCCTTGGTTACTCTCCTACTCAAAAAGGCTATAAATGCTATTGTCCATTCACCAATAAATTTTACACTACCATGGATGTCACATTTTTTGAGTCTCAATCTTTTTTCTCCCTAAATTCCCCTCAGGGGGAGACTGAGCCTATTACAAGTAGTCTTGATGGAAATTTTTGGGGATTGACGATCTAAATACCAGAATTGAGTCCCCTCAGTCAAAAATACCTGAGATTGATGGTCTAAATACCGAGTCACCTCAGCCAAAAATACCTATCCCGATCGTCCCAATTACTCAGATAGAAGAGTCAGTTCCTATTATTTCTTGTAATAATGAAGATGATCAAGTCAACCCAAATCGAAGTGACAAGCAACCTGAGACTCTTGTTTGTTCTCGGTGACAAACGGTTCAAAGAGGAGTGGAGCCACCACAGCCTCAACAGCAAAGTCATGAATACATCTCGTCCTTAG

mRNA sequence

ATGGTTTTTTCTGATTTTGATAACTCGGCTCAATTGTTTGAATTACGCAATAAGGCACATTCCTTACGACAAGGTGAATCCGATGTCACCCAATACTACAGCTCATTACGTAGGTTGTGGGCTGAACTTGATTTATGTCTCAATCTCGAATGGGAGAACTCGAAGGATGCTGAACGCTTCCGCAAACATGTCGAGAAGGAACGAATTTATGATTTTCTTGCAGGTATTCGTCCGGAATTAGATGATGTGCGTGGCCGCTTACTTGCCACAAAGCCAATCCCAGCCATTGACGAAATCTTCGCAGAAGTTCGCTGGGAGTCAAGCCGTAAACGTGTGATGATGGGTGATACACATACAAAACCTTTGTCCCTCTCACTGGAATCATCAGCTCTGGCGGCACGAGGTCCACCACCACCTTCATCCCGATCTACTCGTCGGAACAACCTATGGTGTGATCATTGTAAGCGCACAAACCATACAAAAGATCAGTGTTGGGAATTCCATGGTCGTCCTCAACGGAAGAATTTATCAGGGGATTATCGGCCACCTCCACCTACAAATACTCCATCTTCTCGAACTAGCTCCTCCGGCTATCAAGTGGGCCCTAGTATGTCAAACTCCCAAGATTTGGCCACCTCTCTCCCTCCATTTTCGAAGGCACAACTTGAACAGCTCTATCGCCTCTTAACACCGCCGGTTGAGTCTACTCCTTCGTCAAGTTTTGTGGCACAACGAGGTATTTTTAGTGCAGCTTTAACAAGTCAGCAGCATTCCGATCAGTGGATCTTAGATTCAGGTGCAACTGATCATATGACCGCTTTTCATGATATGTTTACCATGTACTCACCCAACCCGATTCAGACACATGTCAAGCTTGCAGATGGGTCATCGGCCATTATTAAGGGCTTTGGTTCTGTTATTCTTAGCCCAAACATTACATTGCACTCAGTGCTCCATGTGCCTAAATTATATTGCAATCTAATTTTTGTTCAGAAGTTGACTCATGATTTAAAGTGTCAAGCCCTGTTCACTGACTCTAAGTGTTTGTTTCAGGACTTGATAACGGGAACGACGATTGGCAATGCTGATGGCTTTGAAGGGCTCTACTACTTCAGAGGACCAAGTCTAAGAAATAAACAAGTTCTTCAGATGATCAAGTCAACCCAAATCGAAGTGACAAGCAACCTGAGACTCTTGTTTGTTCTCGGTGACAAACGGTTCAAAGAGGAGTGGAGCCACCACAGCCTCAACAGCAAAGTCATGAATACATCTCGTCCTTAG

Coding sequence (CDS)

ATGGTTTTTTCTGATTTTGATAACTCGGCTCAATTGTTTGAATTACGCAATAAGGCACATTCCTTACGACAAGGTGAATCCGATGTCACCCAATACTACAGCTCATTACGTAGGTTGTGGGCTGAACTTGATTTATGTCTCAATCTCGAATGGGAGAACTCGAAGGATGCTGAACGCTTCCGCAAACATGTCGAGAAGGAACGAATTTATGATTTTCTTGCAGGTATTCGTCCGGAATTAGATGATGTGCGTGGCCGCTTACTTGCCACAAAGCCAATCCCAGCCATTGACGAAATCTTCGCAGAAGTTCGCTGGGAGTCAAGCCGTAAACGTGTGATGATGGGTGATACACATACAAAACCTTTGTCCCTCTCACTGGAATCATCAGCTCTGGCGGCACGAGGTCCACCACCACCTTCATCCCGATCTACTCGTCGGAACAACCTATGGTGTGATCATTGTAAGCGCACAAACCATACAAAAGATCAGTGTTGGGAATTCCATGGTCGTCCTCAACGGAAGAATTTATCAGGGGATTATCGGCCACCTCCACCTACAAATACTCCATCTTCTCGAACTAGCTCCTCCGGCTATCAAGTGGGCCCTAGTATGTCAAACTCCCAAGATTTGGCCACCTCTCTCCCTCCATTTTCGAAGGCACAACTTGAACAGCTCTATCGCCTCTTAACACCGCCGGTTGAGTCTACTCCTTCGTCAAGTTTTGTGGCACAACGAGGTATTTTTAGTGCAGCTTTAACAAGTCAGCAGCATTCCGATCAGTGGATCTTAGATTCAGGTGCAACTGATCATATGACCGCTTTTCATGATATGTTTACCATGTACTCACCCAACCCGATTCAGACACATGTCAAGCTTGCAGATGGGTCATCGGCCATTATTAAGGGCTTTGGTTCTGTTATTCTTAGCCCAAACATTACATTGCACTCAGTGCTCCATGTGCCTAAATTATATTGCAATCTAATTTTTGTTCAGAAGTTGACTCATGATTTAAAGTGTCAAGCCCTGTTCACTGACTCTAAGTGTTTGTTTCAGGACTTGATAACGGGAACGACGATTGGCAATGCTGATGGCTTTGAAGGGCTCTACTACTTCAGAGGACCAAGTCTAAGAAATAAACAAGTTCTTCAGATGATCAAGTCAACCCAAATCGAAGTGACAAGCAACCTGAGACTCTTGTTTGTTCTCGGTGACAAACGGTTCAAAGAGGAGTGGAGCCACCACAGCCTCAACAGCAAAGTCATGAATACATCTCGTCCTTAG

Protein sequence

MVFSDFDNSAQLFELRNKAHSLRQGESDVTQYYSSLRRLWAELDLCLNLEWENSKDAERFRKHVEKERIYDFLAGIRPELDDVRGRLLATKPIPAIDEIFAEVRWESSRKRVMMGDTHTKPLSLSLESSALAARGPPPPSSRSTRRNNLWCDHCKRTNHTKDQCWEFHGRPQRKNLSGDYRPPPPTNTPSSRTSSSGYQVGPSMSNSQDLATSLPPFSKAQLEQLYRLLTPPVESTPSSSFVAQRGIFSAALTSQQHSDQWILDSGATDHMTAFHDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILSPNITLHSVLHVPKLYCNLIFVQKLTHDLKCQALFTDSKCLFQDLITGTTIGNADGFEGLYYFRGPSLRNKQVLQMIKSTQIEVTSNLRLLFVLGDKRFKEEWSHHSLNSKVMNTSRP

Homology

[Close]

BLAST of Moc06g30860 vs. NCBI nr
Match: XP_022159153.1 (uncharacterized protein LOC111025577 [Momordica charantia])

HSP 1 Score: 542.3 bits (1396), Expect = 3.6e-150
Identity = 292/383 (76.24%), Postives = 294/383 (76.76%), Query Frame = 0


Query: 1   MVFSDFDNSAQLFELRNKAHSLRQGESDVTQYYSSLRRLWAELDLCLNLEWENSKDAERF 60
           M FSDFDNSAQLFEL NKA SLRQGESDVTQYYSSLRRLWAELDLCLNLEWENSKDAERF
Sbjct: 131 MAFSDFDNSAQLFELHNKARSLRQGESDVTQYYSSLRRLWAELDLCLNLEWENSKDAERF 190

Query: 61  RKHVEKERIYDFLAGIRPELDDVRGRLLATKPIPAIDEIFAEVRWESSRKRVMMGDTHTK 120
           RKHVEKERIYDFLAG+RPELDDVRGRLLATKPIPAIDEIFAEV WESSRKRVMMGDTHTK
Sbjct: 191 RKHVEKERIYDFLAGLRPELDDVRGRLLATKPIPAIDEIFAEVSWESSRKRVMMGDTHTK 250

Query: 121 PLSLSLESSALAARGPPPPSSRSTRRNNLWCDHCKRTNHTKDQCWEFHGRPQRKNLSGDY 180
           PLSLSLESSALAARGPPP                                          
Sbjct: 251 PLSLSLESSALAARGPPP------------------------------------------ 310

Query: 181 RPPPPTNTPSSRTSSSGYQVGPSMSNSQDLATSLPPFSKAQLEQLYRLLTPPVESTPSSS 240
                                           S  P   AQLEQLYRLLT PVESTPSSS
Sbjct: 311 --------------------------------SKQPI--AQLEQLYRLLTLPVESTPSSS 370

Query: 241 FVAQRGIFSAALTSQQHSDQWILDSGATDHMTAFHDMFTMYSPNPIQTHVKLADGSSAII 300
           FVAQRGI SAALT QQHSDQWILDSGATDHMTAFHDMFTMYSPNPIQTHVKLADGSSAII
Sbjct: 371 FVAQRGISSAALTRQQHSDQWILDSGATDHMTAFHDMFTMYSPNPIQTHVKLADGSSAII 430

Query: 301 KGFGSVILSPNITLHSVLHVPKLYCNLIFVQKLTHDLKCQALFTDSKCLFQDLITGTTIG 360
           KGFGSVILSPNITLHSVL VPKL CNLI VQKLTHDLKCQALFTDSKCLFQDLITGTTIG
Sbjct: 431 KGFGSVILSPNITLHSVLXVPKLCCNLISVQKLTHDLKCQALFTDSKCLFQDLITGTTIG 437

Query: 361 NADGFEGLYYFRGPSLRNKQVLQ 384
           +ADGFEGLYYFRGPSLRNKQVLQ
Sbjct: 491 SADGFEGLYYFRGPSLRNKQVLQ 437

[Close]

BLAST of Moc06g30860 vs. NCBI nr
Match: XP_022154801.1 (uncharacterized protein LOC111021967 [Momordica charantia])

HSP 1 Score: 305.4 bits (781), Expect = 7.4e-79
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MVFSDFDNSAQLFELRNKAHSLRQGESDVTQYYSSLRRLWAELDLCLNLEWENSKDAERF 60
           MVFSDFDNSAQLFELRNKAHSLRQGESDVTQYYSSLRRLWAELDLCLNLEWENSKDAERF
Sbjct: 24  MVFSDFDNSAQLFELRNKAHSLRQGESDVTQYYSSLRRLWAELDLCLNLEWENSKDAERF 83

Query: 61  RKHVEKERIYDFLAGIRPELDDVRGRLLATKPIPAIDEIFAEVRWESSRKRVMMGDTHTK 120
           RKHVEKERIYDFLAGIRPELDDVRGRLLATKPIPAIDEIFAEVRWESSRKRVMMGDTHTK
Sbjct: 84  RKHVEKERIYDFLAGIRPELDDVRGRLLATKPIPAIDEIFAEVRWESSRKRVMMGDTHTK 143

Query: 121 PLSLSLESSALAARGPPPPSSRSTRRNNLWCD 153
           PLSLSLESSALAARGPPPPSSRSTRRNNLW D
Sbjct: 144 PLSLSLESSALAARGPPPPSSRSTRRNNLWFD 175

[Close]

BLAST of Moc06g30860 vs. NCBI nr
Match: RVW98618.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 302.0 bits (772), Expect = 8.2e-78
Identity = 165/386 (42.75%), Postives = 239/386 (61.92%), Query Frame = 0


Query: 2   VFSDFDNSAQLFELRNKAHSLRQGESDVTQYYSSLRRLWAELDLCLNLEWENSKDAERFR 61
           ++SD +NS+Q+F+L++K    RQG+ +VT YY+ +  LW ELDLC   EW+   D+ R +
Sbjct: 130 MYSDLENSSQIFDLKSKLWQSRQGDREVTTYYNQMVTLWQELDLCYEDEWDCPNDSVRHK 189

Query: 62  KHVEKERIYDFLAGIRPELDDVRGRLLATKPIPAIDEIFAEVRWESSRKRVMMGDTHTKP 121
           K  E +R+Y FLAG+   LD+VRGR+L  KP+P+I E+F+EVR E +R++VM+ D   K 
Sbjct: 190 KREENDRVYVFLAGLNHNLDEVRGRILGRKPLPSIREVFSEVRREEARRKVMLTDPEPKS 249

Query: 122 LSLSLESSALAARGPPPPSSRSTRRNNLWCDHCKRTNHTKDQCWEFHGRPQRKNLSGDYR 181
            +  +ESSAL ++G     S   RR   WCDHCK+  HTK+ CW+ HG+PQ      +++
Sbjct: 250 -NPEIESSALVSKG---SDSDGDRRKKPWCDHCKKPWHTKETCWKIHGKPQ------NFK 309

Query: 182 PPPPTNTPSSRTSSSGYQVGPSMSNSQDLATSLPPFSKAQLEQLYRLLTPPVESTPSSSF 241
               ++  + +T S+  Q GP +++ +      P F+K QL  LY+L   P  S PS S 
Sbjct: 310 KKNGSDGRAFQTMSADSQ-GPQINSEK------PNFTKEQLSHLYKLFQSPQFSNPSCSL 369

Query: 242 VAQRGIFSAALTSQQHSDQ--WILDSGATDHMTAFHDMFTMYSPNPIQTHVKLADGSSAI 301
             Q     AAL+S + +    WI+DSGATDHMT    +F+ Y P      +K+ADGS + 
Sbjct: 370 AQQGNYLIAALSSIKSNVHCPWIIDSGATDHMTGSSQIFSSYKPCAGNKKIKIADGSLSA 429

Query: 302 IKGFGSVILSPNITLHSVLHVPKLYCNLIFVQKLTHDLKCQALFTDSKCLFQDLITGTTI 361
           I G GSV +SP++TLH+VLHVP L CNL+ + K+T D +CQA F  S C FQ+L +G TI
Sbjct: 430 IAGKGSVFISPSLTLHNVLHVPNLSCNLLSISKITQDHQCQANFYPSYCEFQELTSGRTI 489

Query: 362 GNADGFEGLYYFRGPSLRNKQVLQMI 386
           GNA    GLY+F   S   K + +++
Sbjct: 490 GNAREIGGLYFFENGSESRKPIQKIL 498

[Close]

BLAST of Moc06g30860 vs. NCBI nr
Match: KAE8658400.1 (60S ribosomal protein L38 [Hibiscus syriacus])

HSP 1 Score: 293.9 bits (751), Expect = 2.2e-75
Identity = 168/403 (41.69%), Postives = 236/403 (58.56%), Query Frame = 0


Query: 3   FSDFDNSAQLFELRNKAHSLRQGESDVTQYYSSLRRLWAELDLCLNLEWENSKDAERFRK 62
           +SD  N+ Q FEL+ +   L+QGE  VTQYY+ L+ LW E+D+  + EW  +KD   F+K
Sbjct: 354 YSDLGNAGQWFELKTRLWRLKQGEKTVTQYYTELKTLWQEVDMFSDYEWSCAKDRALFQK 413

Query: 63  HVEKERIYDFLAGIRPELDDVRGRLLATKPIPAIDEIFAEVRWESSRKRVMMGDTHTKPL 122
            VEKER+++FL G+  ELD+VRGR+L  +P+P+  E+F+EVR E SR+ VM+G     P 
Sbjct: 414 MVEKERVFEFLVGLNKELDEVRGRILGREPLPSTREVFSEVRREESRRTVMLGGHSPNP- 473

Query: 123 SLSLESSALAARGPPPPSSRSTRRNNLWCDHCKRTNHTKDQCWEFHGRPQRKNLSGDYRP 182
               ESSAL +  PP  + R   R+   C+HC +  HTK +CW+ HG+P  +N S +   
Sbjct: 474 ---TESSALFSGQPPRRNDRRNDRDRPICEHCNKPGHTKAKCWKLHGKP-AENFSAN--- 533

Query: 183 PPPTNTPSSRTSSSGYQVGPSMSNSQDLATSLPPFSKAQLEQLYRLL-------TPPVES 242
                  +SR +   +      S     A+ L  FSK QLEQLY+L+       TP   S
Sbjct: 534 ------RNSRNAKGFHASSEDASEEPKPASELSAFSKEQLEQLYQLMSSHSISNTPNPSS 593

Query: 243 TPSSSFVAQRGIFSAALTSQQHSDQWILDSGATDHMTAFHDMFTMYSPNPIQTHVKLADG 302
             +SS +AQ+G +  A  +   S+ WI+DSGATDHMT    +F+ Y P      VK+ADG
Sbjct: 594 YIASSSLAQKGTYPTAFIAGSKSNPWIIDSGATDHMTGNSSIFSSYFPLSGNLKVKIADG 653

Query: 303 SSAIIKGFGSVILSPNITLHSVLHVPKLYCNLIFVQKLTHDLKCQALFTDSKCLFQDLIT 362
           S   I G GS+I+SP++TL +VLHVPKL CNLI V ++ HD KC A  T +   FQD  +
Sbjct: 654 SLTSIAGKGSIIISPSLTLLNVLHVPKLSCNLISVNRIIHDCKCIATITFAGFEFQDPCS 713

Query: 363 GTTIGNADGFEGLYYFRGPSLRNKQVLQMIKSTQIEVTSNLRL 399
           G  IGNA   +GLY+    +  NKQV ++   T +   + + L
Sbjct: 714 GKMIGNAKEVDGLYHLVTDNPSNKQVQKLRCFTTLSCENEIML 742

[Close]

BLAST of Moc06g30860 vs. NCBI nr
Match: CAN76196.1 (hypothetical protein VITISV_041073 [Vitis vinifera])

HSP 1 Score: 292.7 bits (748), Expect = 5.0e-75
Identity = 163/383 (42.56%), Postives = 234/383 (61.10%), Query Frame = 0


Query: 2   VFSDFDNSAQLFELRNKAHSLRQGESDVTQYYSSLRRLWAELDLCLNLEWENSKDAERFR 61
           ++SD +NS+Q+F+L++K    RQG+ +VT YY+ +  LW ELDLC   EW+   D+ R +
Sbjct: 114 MYSDLENSSQIFDLKSKLWQSRQGDREVTTYYNQMVTLWQELDLCYEDEWDCPNDSVRHK 173

Query: 62  KHVEKERIYDFLAGIRPELDDVRGRLLATKPIPAIDEIFAEVRWESSRKRVMMGDTHTKP 121
           K  E +R+Y FLA +   LD+VRGR+L  KP+P+I E+F+EVR E +R++VM+  T  +P
Sbjct: 174 KREENDRVYVFLAALNHNLDEVRGRILGRKPLPSIREVFSEVRREEARRKVML--TDPEP 233

Query: 122 LS-LSLESSALAARGPPPPSSRSTRRNNLWCDHCKRTNHTKDQCWEFHGRPQRKNLSGDY 181
           +S   +ESSAL ++G         RR   WCDHCK+  HTK  CW+ HG+PQ      ++
Sbjct: 234 MSNPEIESSALVSKG---SDLDGDRRKKPWCDHCKKPWHTKGTCWKIHGKPQ------NF 293

Query: 182 RPPPPTNTPSSRTSSSGYQVGPSMSNSQDLATSLPPFSKAQLEQLYRLLTPPVESTPSSS 241
           +    ++  + +T S+  Q GP +++ +      P F+K QL  LY+L   P  S PS S
Sbjct: 294 KKKNGSDGRAFQTMSADSQ-GPQINSEK------PNFTKEQLSHLYKLFQSPQFSNPSCS 353

Query: 242 FVAQRGIFSAALTSQQHSDQ--WILDSGATDHMTAFHDMFTMYSPNPIQTHVKLADGSSA 301
              Q     AAL+S + +    WI+DSGATDHMT    +F+ Y P      +K+ DGS +
Sbjct: 354 LAQQGNYLIAALSSIKSNVHCPWIIDSGATDHMTGSSQIFSSYKPCAGNKKIKIXDGSLS 413

Query: 302 IIKGFGSVILSPNITLHSVLHVPKLYCNLIFVQKLTHDLKCQALFTDSKCLFQDLITGTT 361
            I G GSV +SP++TLH+VLHVP L CNL+ + K+T D +CQA F  S C FQ+L +G T
Sbjct: 414 AIAGKGSVFISPSLTLHNVLHVPNLSCNLLSISKITQDHQCQANFYPSYCEFQELTSGRT 473

Query: 362 IGNADGFEGLYYFRGPSLRNKQV 382
           IGNA    GLY+F   S   K +
Sbjct: 474 IGNAREIGGLYFFENGSESRKPI 478

[Close]

BLAST of Moc06g30860 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.5e-10
Identity = 48/155 (30.97%), Postives = 74/155 (47.74%), Query Frame = 0


Query: 218 SKAQLEQLYRLLTPPVESTPSSSFVAQRGIFSAALTSQQHSDQWILDSGATDHMTAFHDM 277
           S  +  QL   L+      P S F   +   + AL S   S+ W+LDSGAT H+T+  + 
Sbjct: 288 SAKRCSQLQHFLSSVNSQQPPSPFTPWQPRANLALGSPYSSNNWLLDSGATHHITSDFNN 347

Query: 278 FTMYSPNPIQTHVKLADGSSAIIKGFGSVILSPN---ITLHSVLHVPKLYCNLIFVQKLT 337
            +++ P      V +ADGS+  I   GS  LS     + LH++L+VP ++ NLI V +L 
Sbjct: 348 LSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLC 407

Query: 338 HDLKCQALFTDSKCLFQDLITGTTIGNADGFEGLY 370
           +       F  +    +DL TG  +      + LY
Sbjct: 408 NANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELY 442

[Close]

BLAST of Moc06g30860 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-07
Identity = 56/218 (25.69%), Postives = 99/218 (45.41%), Query Frame = 0


Query: 155 KRTNHTKDQCWEFHGRPQRKNLSGDYRPPPPTNTPSSRTSSSGYQVGPSMSNSQDLATSL 214
           + TN  ++Q    + R   +N + +          SS + S   Q  P +   Q    S+
Sbjct: 210 RNTNTNRNQ----NNRGDNRNYNNNNNRSNSWQPSSSGSRSDNRQPKPYLGRCQ--ICSV 269

Query: 215 PPFSKAQLEQLYRLLTPPVESTPSSSFVAQRGIFSAALTSQQHSDQWILDSGATDHMTAF 274
              S  +  QL++  +   +   +S F   +   + A+ S  +++ W+LDSGAT H+T+ 
Sbjct: 270 QGHSAKRCPQLHQFQSTTNQQQSTSPFTPWQPRANLAVNSPYNANNWLLDSGATHHITSD 329

Query: 275 HDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVIL---SPNITLHSVLHVPKLYCNLIFVQ 334
            +  + + P      V +ADGS+  I   GS  L   S ++ L+ VL+VP ++ NLI V 
Sbjct: 330 FNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDLNKVLYVPNIHKNLISVY 389

Query: 335 KLTHDLKCQALFTDSKCLFQDLITGTTIGNADGFEGLY 370
           +L +  +    F  +    +DL TG  +      + LY
Sbjct: 390 RLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELY 421

[Close]

BLAST of Moc06g30860 vs. ExPASy TrEMBL
Match: A0A6J1DY12 (uncharacterized protein LOC111025577 OS=Momordica charantia OX=3673 GN=LOC111025577 PE=4 SV=1)

HSP 1 Score: 542.3 bits (1396), Expect = 1.8e-150
Identity = 292/383 (76.24%), Postives = 294/383 (76.76%), Query Frame = 0


Query: 1   MVFSDFDNSAQLFELRNKAHSLRQGESDVTQYYSSLRRLWAELDLCLNLEWENSKDAERF 60
           M FSDFDNSAQLFEL NKA SLRQGESDVTQYYSSLRRLWAELDLCLNLEWENSKDAERF
Sbjct: 131 MAFSDFDNSAQLFELHNKARSLRQGESDVTQYYSSLRRLWAELDLCLNLEWENSKDAERF 190

Query: 61  RKHVEKERIYDFLAGIRPELDDVRGRLLATKPIPAIDEIFAEVRWESSRKRVMMGDTHTK 120
           RKHVEKERIYDFLAG+RPELDDVRGRLLATKPIPAIDEIFAEV WESSRKRVMMGDTHTK
Sbjct: 191 RKHVEKERIYDFLAGLRPELDDVRGRLLATKPIPAIDEIFAEVSWESSRKRVMMGDTHTK 250

Query: 121 PLSLSLESSALAARGPPPPSSRSTRRNNLWCDHCKRTNHTKDQCWEFHGRPQRKNLSGDY 180
           PLSLSLESSALAARGPPP                                          
Sbjct: 251 PLSLSLESSALAARGPPP------------------------------------------ 310

Query: 181 RPPPPTNTPSSRTSSSGYQVGPSMSNSQDLATSLPPFSKAQLEQLYRLLTPPVESTPSSS 240
                                           S  P   AQLEQLYRLLT PVESTPSSS
Sbjct: 311 --------------------------------SKQPI--AQLEQLYRLLTLPVESTPSSS 370

Query: 241 FVAQRGIFSAALTSQQHSDQWILDSGATDHMTAFHDMFTMYSPNPIQTHVKLADGSSAII 300
           FVAQRGI SAALT QQHSDQWILDSGATDHMTAFHDMFTMYSPNPIQTHVKLADGSSAII
Sbjct: 371 FVAQRGISSAALTRQQHSDQWILDSGATDHMTAFHDMFTMYSPNPIQTHVKLADGSSAII 430

Query: 301 KGFGSVILSPNITLHSVLHVPKLYCNLIFVQKLTHDLKCQALFTDSKCLFQDLITGTTIG 360
           KGFGSVILSPNITLHSVL VPKL CNLI VQKLTHDLKCQALFTDSKCLFQDLITGTTIG
Sbjct: 431 KGFGSVILSPNITLHSVLXVPKLCCNLISVQKLTHDLKCQALFTDSKCLFQDLITGTTIG 437

Query: 361 NADGFEGLYYFRGPSLRNKQVLQ 384
           +ADGFEGLYYFRGPSLRNKQVLQ
Sbjct: 491 SADGFEGLYYFRGPSLRNKQVLQ 437

[Close]

BLAST of Moc06g30860 vs. ExPASy TrEMBL
Match: A0A6J1DPT5 (uncharacterized protein LOC111021967 OS=Momordica charantia OX=3673 GN=LOC111021967 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 3.6e-79
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MVFSDFDNSAQLFELRNKAHSLRQGESDVTQYYSSLRRLWAELDLCLNLEWENSKDAERF 60
           MVFSDFDNSAQLFELRNKAHSLRQGESDVTQYYSSLRRLWAELDLCLNLEWENSKDAERF
Sbjct: 24  MVFSDFDNSAQLFELRNKAHSLRQGESDVTQYYSSLRRLWAELDLCLNLEWENSKDAERF 83

Query: 61  RKHVEKERIYDFLAGIRPELDDVRGRLLATKPIPAIDEIFAEVRWESSRKRVMMGDTHTK 120
           RKHVEKERIYDFLAGIRPELDDVRGRLLATKPIPAIDEIFAEVRWESSRKRVMMGDTHTK
Sbjct: 84  RKHVEKERIYDFLAGIRPELDDVRGRLLATKPIPAIDEIFAEVRWESSRKRVMMGDTHTK 143

Query: 121 PLSLSLESSALAARGPPPPSSRSTRRNNLWCD 153
           PLSLSLESSALAARGPPPPSSRSTRRNNLW D
Sbjct: 144 PLSLSLESSALAARGPPPPSSRSTRRNNLWFD 175

[Close]

BLAST of Moc06g30860 vs. ExPASy TrEMBL
Match: A0A438IPH4 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_3236 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 4.0e-78
Identity = 165/386 (42.75%), Postives = 239/386 (61.92%), Query Frame = 0


Query: 2   VFSDFDNSAQLFELRNKAHSLRQGESDVTQYYSSLRRLWAELDLCLNLEWENSKDAERFR 61
           ++SD +NS+Q+F+L++K    RQG+ +VT YY+ +  LW ELDLC   EW+   D+ R +
Sbjct: 130 MYSDLENSSQIFDLKSKLWQSRQGDREVTTYYNQMVTLWQELDLCYEDEWDCPNDSVRHK 189

Query: 62  KHVEKERIYDFLAGIRPELDDVRGRLLATKPIPAIDEIFAEVRWESSRKRVMMGDTHTKP 121
           K  E +R+Y FLAG+   LD+VRGR+L  KP+P+I E+F+EVR E +R++VM+ D   K 
Sbjct: 190 KREENDRVYVFLAGLNHNLDEVRGRILGRKPLPSIREVFSEVRREEARRKVMLTDPEPKS 249

Query: 122 LSLSLESSALAARGPPPPSSRSTRRNNLWCDHCKRTNHTKDQCWEFHGRPQRKNLSGDYR 181
            +  +ESSAL ++G     S   RR   WCDHCK+  HTK+ CW+ HG+PQ      +++
Sbjct: 250 -NPEIESSALVSKG---SDSDGDRRKKPWCDHCKKPWHTKETCWKIHGKPQ------NFK 309

Query: 182 PPPPTNTPSSRTSSSGYQVGPSMSNSQDLATSLPPFSKAQLEQLYRLLTPPVESTPSSSF 241
               ++  + +T S+  Q GP +++ +      P F+K QL  LY+L   P  S PS S 
Sbjct: 310 KKNGSDGRAFQTMSADSQ-GPQINSEK------PNFTKEQLSHLYKLFQSPQFSNPSCSL 369

Query: 242 VAQRGIFSAALTSQQHSDQ--WILDSGATDHMTAFHDMFTMYSPNPIQTHVKLADGSSAI 301
             Q     AAL+S + +    WI+DSGATDHMT    +F+ Y P      +K+ADGS + 
Sbjct: 370 AQQGNYLIAALSSIKSNVHCPWIIDSGATDHMTGSSQIFSSYKPCAGNKKIKIADGSLSA 429

Query: 302 IKGFGSVILSPNITLHSVLHVPKLYCNLIFVQKLTHDLKCQALFTDSKCLFQDLITGTTI 361
           I G GSV +SP++TLH+VLHVP L CNL+ + K+T D +CQA F  S C FQ+L +G TI
Sbjct: 430 IAGKGSVFISPSLTLHNVLHVPNLSCNLLSISKITQDHQCQANFYPSYCEFQELTSGRTI 489

Query: 362 GNADGFEGLYYFRGPSLRNKQVLQMI 386
           GNA    GLY+F   S   K + +++
Sbjct: 490 GNAREIGGLYFFENGSESRKPIQKIL 498

[Close]

BLAST of Moc06g30860 vs. ExPASy TrEMBL
Match: A0A6A2WU09 (60S ribosomal protein L38 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116971pilonHSYRG00380 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.1e-75
Identity = 168/403 (41.69%), Postives = 236/403 (58.56%), Query Frame = 0


Query: 3   FSDFDNSAQLFELRNKAHSLRQGESDVTQYYSSLRRLWAELDLCLNLEWENSKDAERFRK 62
           +SD  N+ Q FEL+ +   L+QGE  VTQYY+ L+ LW E+D+  + EW  +KD   F+K
Sbjct: 354 YSDLGNAGQWFELKTRLWRLKQGEKTVTQYYTELKTLWQEVDMFSDYEWSCAKDRALFQK 413

Query: 63  HVEKERIYDFLAGIRPELDDVRGRLLATKPIPAIDEIFAEVRWESSRKRVMMGDTHTKPL 122
            VEKER+++FL G+  ELD+VRGR+L  +P+P+  E+F+EVR E SR+ VM+G     P 
Sbjct: 414 MVEKERVFEFLVGLNKELDEVRGRILGREPLPSTREVFSEVRREESRRTVMLGGHSPNP- 473

Query: 123 SLSLESSALAARGPPPPSSRSTRRNNLWCDHCKRTNHTKDQCWEFHGRPQRKNLSGDYRP 182
               ESSAL +  PP  + R   R+   C+HC +  HTK +CW+ HG+P  +N S +   
Sbjct: 474 ---TESSALFSGQPPRRNDRRNDRDRPICEHCNKPGHTKAKCWKLHGKP-AENFSAN--- 533

Query: 183 PPPTNTPSSRTSSSGYQVGPSMSNSQDLATSLPPFSKAQLEQLYRLL-------TPPVES 242
                  +SR +   +      S     A+ L  FSK QLEQLY+L+       TP   S
Sbjct: 534 ------RNSRNAKGFHASSEDASEEPKPASELSAFSKEQLEQLYQLMSSHSISNTPNPSS 593

Query: 243 TPSSSFVAQRGIFSAALTSQQHSDQWILDSGATDHMTAFHDMFTMYSPNPIQTHVKLADG 302
             +SS +AQ+G +  A  +   S+ WI+DSGATDHMT    +F+ Y P      VK+ADG
Sbjct: 594 YIASSSLAQKGTYPTAFIAGSKSNPWIIDSGATDHMTGNSSIFSSYFPLSGNLKVKIADG 653

Query: 303 SSAIIKGFGSVILSPNITLHSVLHVPKLYCNLIFVQKLTHDLKCQALFTDSKCLFQDLIT 362
           S   I G GS+I+SP++TL +VLHVPKL CNLI V ++ HD KC A  T +   FQD  +
Sbjct: 654 SLTSIAGKGSIIISPSLTLLNVLHVPKLSCNLISVNRIIHDCKCIATITFAGFEFQDPCS 713

Query: 363 GTTIGNADGFEGLYYFRGPSLRNKQVLQMIKSTQIEVTSNLRL 399
           G  IGNA   +GLY+    +  NKQV ++   T +   + + L
Sbjct: 714 GKMIGNAKEVDGLYHLVTDNPSNKQVQKLRCFTTLSCENEIML 742

[Close]

BLAST of Moc06g30860 vs. ExPASy TrEMBL
Match: A5AYJ3 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_041073 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 2.4e-75
Identity = 163/383 (42.56%), Postives = 234/383 (61.10%), Query Frame = 0


Query: 2   VFSDFDNSAQLFELRNKAHSLRQGESDVTQYYSSLRRLWAELDLCLNLEWENSKDAERFR 61
           ++SD +NS+Q+F+L++K    RQG+ +VT YY+ +  LW ELDLC   EW+   D+ R +
Sbjct: 114 MYSDLENSSQIFDLKSKLWQSRQGDREVTTYYNQMVTLWQELDLCYEDEWDCPNDSVRHK 173

Query: 62  KHVEKERIYDFLAGIRPELDDVRGRLLATKPIPAIDEIFAEVRWESSRKRVMMGDTHTKP 121
           K  E +R+Y FLA +   LD+VRGR+L  KP+P+I E+F+EVR E +R++VM+  T  +P
Sbjct: 174 KREENDRVYVFLAALNHNLDEVRGRILGRKPLPSIREVFSEVRREEARRKVML--TDPEP 233

Query: 122 LS-LSLESSALAARGPPPPSSRSTRRNNLWCDHCKRTNHTKDQCWEFHGRPQRKNLSGDY 181
           +S   +ESSAL ++G         RR   WCDHCK+  HTK  CW+ HG+PQ      ++
Sbjct: 234 MSNPEIESSALVSKG---SDLDGDRRKKPWCDHCKKPWHTKGTCWKIHGKPQ------NF 293

Query: 182 RPPPPTNTPSSRTSSSGYQVGPSMSNSQDLATSLPPFSKAQLEQLYRLLTPPVESTPSSS 241
           +    ++  + +T S+  Q GP +++ +      P F+K QL  LY+L   P  S PS S
Sbjct: 294 KKKNGSDGRAFQTMSADSQ-GPQINSEK------PNFTKEQLSHLYKLFQSPQFSNPSCS 353

Query: 242 FVAQRGIFSAALTSQQHSDQ--WILDSGATDHMTAFHDMFTMYSPNPIQTHVKLADGSSA 301
              Q     AAL+S + +    WI+DSGATDHMT    +F+ Y P      +K+ DGS +
Sbjct: 354 LAQQGNYLIAALSSIKSNVHCPWIIDSGATDHMTGSSQIFSSYKPCAGNKKIKIXDGSLS 413

Query: 302 IIKGFGSVILSPNITLHSVLHVPKLYCNLIFVQKLTHDLKCQALFTDSKCLFQDLITGTT 361
            I G GSV +SP++TLH+VLHVP L CNL+ + K+T D +CQA F  S C FQ+L +G T
Sbjct: 414 AIAGKGSVFISPSLTLHNVLHVPNLSCNLLSISKITQDHQCQANFYPSYCEFQELTSGRT 473

Query: 362 IGNADGFEGLYYFRGPSLRNKQV 382
           IGNA    GLY+F   S   K +
Sbjct: 474 IGNAREIGGLYFFENGSESRKPI 478

[Close]

BLAST of Moc06g30860 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 4.7e-07
Identity = 33/104 (31.73%), Postives = 55/104 (52.88%), Query Frame = 0


Query: 11  QLFELRNKAHSLRQGESDVTQYYSSLRRLWAELD--------LCLNLEWENSKDAERFRK 70
           ++++LR +  +LRQG   V +Y+  L ++W EL          C     E +K AE  R 
Sbjct: 126 KIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEAR- 185

Query: 71  HVEKERIYDFLAGIR--PELDDVRGRLLATKPIPAIDEIFAEVR 105
             EKE+ Y+FL G++     + V  +++  KP P++ E FA V+
Sbjct: 186 --EKEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLHEAFAMVK 226

The following BLAST results are available for this feature:

BLAST of Moc06g30860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159153.1	3.6e-150	76.24	uncharacterized protein LOC111025577 [Momordica charantia]	[more]
XP_022154801.1	7.4e-79	99.34	uncharacterized protein LOC111021967 [Momordica charantia]	[more]
RVW98618.1	8.2e-78	42.75	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
KAE8658400.1	2.2e-75	41.69	60S ribosomal protein L38 [Hibiscus syriacus]	[more]
CAN76196.1	5.0e-75	42.56	hypothetical protein VITISV_041073 [Vitis vinifera]	[more]

BLAST of Moc06g30860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	4.5e-10	30.97	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.1e-07	25.69	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Moc06g30860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DY12	1.8e-150	76.24	uncharacterized protein LOC111025577 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DPT5	3.6e-79	99.34	uncharacterized protein LOC111021967 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A438IPH4	4.0e-78	42.75	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A6A2WU09	1.1e-75	41.69	60S ribosomal protein L38 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116971pil...	[more]
A5AYJ3	2.4e-75	42.56	Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI...	[more]

BLAST of Moc06g30860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21280.1	4.7e-07	31.73	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..213
None	No IPR available	PANTHER	PTHR34222:SF37	SUBFAMILY NOT NAMED	coord: 3..175
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 3..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g30860.1	Moc06g30860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0016787	hydrolase activity