Moc06g30810 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g30810
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	protein FAR-RED ELONGATED HYPOCOTYL 3-like
Location	chr6: 23209440 .. 23210422 (+)
RNA-Seq Expression	Moc06g30810
Synteny	Moc06g30810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTTCACAACCGAGTTCTTCATGTCGTAAGAACCACGCCCGAGGTTTCAGGGATTCCCACCCGAGTTCTGATATATAATCATCTTGTTTTTTTTTTAGTTTATAATTTTATTATACGTACGCAGAATGTCTCGTCTGTTTGTTAGTTACGGTGGTCAGTGGAATGAGGCGCAATCTATCTATGACGGTGGAATTATGGGAGGTTTGGATGTAGATGATAGTATAACATAATTACAGCCTTAGGTATTTTTTTTTCCTTTTTGAGATGCCCTCAACATCCCTCTGAAGTTTCATTGTACGTATCTGTCATATCGAAGCAAAGACACAATAGTGGTAGCAGTTCACAAAATCTCATCAGTCTAAGATCCAAAACGTTCCATTCATTTCCTTACCAGTTAGGGCAAAATGTTCCTAATTATGTTCCCTTAATTCCTATTCATTCCACGCTACTGGGTGTTGGTCCCTCATGTTCTGTCCCATCAATAACACCGTTGACTGAAAATCTGGTCCCATGCAACTTAGGTGCTGATTAACTAAACTACTATGGTCAGCGGGACGAGGATGATGAGAATGACGTGGGGTACGAGGCTGAGGATAACGATGGGGATAATGACAAGGGTAATGATTTTGAGTCTGGTGATACTAAGTTTGAGAATGATGTTGGGATTCACAATGAAAAGAAGGTGGAGCTAGTAGATGTAGATGCCCCTTCTTCTGCACCCTTATATGAAGTAAACACGATACGTATGAATGCATCTTGTTCTACTATTCAAGCTTCTTGCTACAGAGATATCAATAGGACAGGTGATGAACTTAGGTTGACCTTAGAAGAGATTGCAGTAGGGAGTTCTTTCCGATCAAAGGCAACATTGGAGTTCAATCTATCGATGTTCGCAATGAGATTGAATTTTGAATATCACGTGAAGAAATTTACGAAGACTTTGTTAACTGTCGGATGCTGGGAGGATGCATGCAAATAG

mRNA sequence

ATGATGTTCACAACCGAGTTCTTCATGTCAATGTCTCGTCTGTTTGTTAGTTACGGTGGTCAGTGGAATGAGGCGCAATCTATCTATGACGGTGGAATTATGGGAGGGCAAAATGTTCCTAATTATGTTCCCTTAATTCCTATTCATTCCACGCTACTGGGTCGGGACGAGGATGATGAGAATGACGTGGGGTACGAGGCTGAGGATAACGATGGGGATAATGACAAGGGTAATGATTTTGAGTCTGGTGATACTAAGTTTGAGAATGATGTTGGGATTCACAATGAAAAGAAGGTGGAGCTAGTAGATGTAGATGCCCCTTCTTCTGCACCCTTATATGAAGTAAACACGATACGTATGAATGCATCTTGTTCTACTATTCAAGCTTCTTGCTACAGAGATATCAATAGGACAGGTGATGAACTTAGGTTGACCTTAGAAGAGATTGCAGTAGGGAGTTCTTTCCGATCAAAGGCAACATTGGAGTTCAATCTATCGATGTTCGCAATGAGATTGAATTTTGAATATCACGTGAAGAAATTTACGAAGACTTTGTTAACTGTCGGATGCTGGGAGGATGCATGCAAATAG

Coding sequence (CDS)

ATGATGTTCACAACCGAGTTCTTCATGTCAATGTCTCGTCTGTTTGTTAGTTACGGTGGTCAGTGGAATGAGGCGCAATCTATCTATGACGGTGGAATTATGGGAGGGCAAAATGTTCCTAATTATGTTCCCTTAATTCCTATTCATTCCACGCTACTGGGTCGGGACGAGGATGATGAGAATGACGTGGGGTACGAGGCTGAGGATAACGATGGGGATAATGACAAGGGTAATGATTTTGAGTCTGGTGATACTAAGTTTGAGAATGATGTTGGGATTCACAATGAAAAGAAGGTGGAGCTAGTAGATGTAGATGCCCCTTCTTCTGCACCCTTATATGAAGTAAACACGATACGTATGAATGCATCTTGTTCTACTATTCAAGCTTCTTGCTACAGAGATATCAATAGGACAGGTGATGAACTTAGGTTGACCTTAGAAGAGATTGCAGTAGGGAGTTCTTTCCGATCAAAGGCAACATTGGAGTTCAATCTATCGATGTTCGCAATGAGATTGAATTTTGAATATCACGTGAAGAAATTTACGAAGACTTTGTTAACTGTCGGATGCTGGGAGGATGCATGCAAATAG

Protein sequence

MMFTTEFFMSMSRLFVSYGGQWNEAQSIYDGGIMGGQNVPNYVPLIPIHSTLLGRDEDDENDVGYEAEDNDGDNDKGNDFESGDTKFENDVGIHNEKKVELVDVDAPSSAPLYEVNTIRMNASCSTIQASCYRDINRTGDELRLTLEEIAVGSSFRSKATLEFNLSMFAMRLNFEYHVKKFTKTLLTVGCWEDACK

Homology

[Close]

BLAST of Moc06g30810 vs. NCBI nr
Match: XP_022158743.1 (PKS-NRPS hybrid synthetase CHGG_01239-like [Momordica charantia])

HSP 1 Score: 163.7 bits (413), Expect = 1.6e-36
Identity = 91/143 (63.64%), Postives = 110/143 (76.92%), Query Frame = 0


Query: 56  DEDDENDVGY--EAEDNDGDNDKGNDFESGDTKFENDVGIHNEKKVELVDVDAPSSAPLY 115
           DEDD+ND GY  EAEDNDGDN+ G+ FE  D +F NDVGI NE +VE +DV A SSAPL+
Sbjct: 81  DEDDDND-GYNDEAEDNDGDNEGGDKFEGDDAEFVNDVGIDNEVEVEPMDVYATSSAPLH 140

Query: 116 EVNTIRMNASCSTIQASCYRDINRTGDELRLTLEEIAVGSSFRSKATLEFNLSMFAMRLN 175
           E+N + MNA C+T QASC RDI++T DEL LT E+I V S+F+S   L+FN S+FAM+LN
Sbjct: 141 EMNRVSMNAPCATNQASCSRDISKTVDELGLTSEKIVVWSAFKSNVELQFNQSVFAMKLN 200

Query: 176 FEYHVKKFTKTLLTVGCWEDACK 197
           FEY VKK TK+LLTVGC  D CK
Sbjct: 201 FEYRVKKSTKSLLTVGCCGDGCK 222

[Close]

BLAST of Moc06g30810 vs. NCBI nr
Match: XP_022135945.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia])

HSP 1 Score: 116.7 bits (291), Expect = 2.3e-22
Identity = 66/110 (60.00%), Postives = 74/110 (67.27%), Query Frame = 0


Query: 87  FENDVGIHNEKKVELVDVDAPSSAPLYEVNTIRMNASCSTIQASCYRDINRTGDELRLTL 146
           FENDVGI NEK VE  DV APS APL+EVNT                   RT DEL  T 
Sbjct: 29  FENDVGIDNEKDVEPADVYAPSFAPLHEVNT-----------------RYRTVDELGFTS 88

Query: 147 EEIAVGSSFRSKATLEFNLSMFAMRLNFEYHVKKFTKTLLTVGCWEDACK 197
           EEIAVGS+F+SKA L+FNLS+F MRLNFEYH+KK TK+LLTV C E  C+
Sbjct: 89  EEIAVGSTFKSKADLQFNLSVFTMRLNFEYHMKKSTKSLLTVACCESECE 121

[Close]

BLAST of Moc06g30810 vs. NCBI nr
Match: XP_022159183.1 (uncharacterized protein LOC111025603 [Momordica charantia])

HSP 1 Score: 99.0 bits (245), Expect = 4.9e-17
Identity = 46/79 (58.23%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 118 IRMNASCSTIQASCYRDINRTGDELRLTLEEIAVGSSFRSKATLEFNLSMFAMRLNFEYH 177
           +  NA C+T QAS  R++ RT DE+ L++++IA+GS+FRSK  L+F LS+FAMR+NFEYH
Sbjct: 2   VSTNAWCATCQASWSREMARTDDEVGLSMKDIAIGSTFRSKEELQFKLSVFAMRVNFEYH 61

Query: 178 VKKFTKTLLTVGCWEDACK 197
           VKK TK+L  +GC ED CK
Sbjct: 62  VKKSTKSLYPIGCSEDGCK 80

[Close]

BLAST of Moc06g30810 vs. NCBI nr
Match: XP_022156802.1 (uncharacterized protein LOC111023635 [Momordica charantia])

HSP 1 Score: 86.7 bits (213), Expect = 2.5e-13
Identity = 78/246 (31.71%), Postives = 111/246 (45.12%), Query Frame = 0


Query: 11  MSRLFVSYGGQWNEAQSIYDGGIMGGQNVPNYVPLIPIHSTL------------------ 70
           M RLFV YGG+WNEA ++Y+GG MGG +V   +    + S L                  
Sbjct: 1   MRRLFVIYGGKWNEAGTVYEGGXMGGLDVDETITYANLVSALHMLTRIDLDQFDLIVQCV 60

Query: 71  ------------------LGRDEDD-------ENDVGYEAEDNDG------------DND 130
                             L  DE+D       EN+V YE + +D             ++D
Sbjct: 61  YDLIFEITPLADNVISCNLDDDENDDGNGQLYENEVEYEFQSDDEYDYDEYRTEDGVEDD 120

Query: 131 KGNDFESGDT---KFENDVGIHNEKKVELVDVDAPSSAPLYEVNTIRMNASCSTIQASCY 190
            GN +++G+      E+ +  H E + + V          +E +T+  NA   T++    
Sbjct: 121 GGNGYDNGEEDEYHTEDVLDEHYENEGQHV----------HESHTVSGNAPYQTVEEVVX 180

Query: 191 RDINR--TGDELRLTLEEIAVGSSFRSKATLEFNLSMFAMRLNFEYHVKKFTKTLLTVGC 197
           R +    TG+     + EIAV   FRSK  L F LS+ AM+LNF++ VKK TKTL TVGC
Sbjct: 181 RPMQNIITGNGSDF-IGEIAVKGIFRSKEELRFKLSVLAMKLNFKFKVKKSTKTLFTVGC 235

[Close]

BLAST of Moc06g30810 vs. NCBI nr
Match: XP_022154803.1 (uncharacterized protein LOC111021969 [Momordica charantia])

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-09
Identity = 61/190 (32.11%), Postives = 96/190 (50.53%), Query Frame = 0


Query: 37  QNVPNYVPLIPIHSTL-----------------------LGRDEDDE----NDVGYEAED 96
           QNVP+  PL  +HS++                       LG DE +     +DVG   +D
Sbjct: 139 QNVPSPAPLNHVHSSIRTVHPPSSVKFMTPLTDNVVPCNLGDDEHEHFGQWDDVG---DD 198

Query: 97  NDGD-NDKGNDFESGDTKFENDVGIHNEKKVELVDVDAPSSAPLYEVNTIRMNASCSTIQ 156
            D +    G+D E  D   E +    NE    + D D     P+ EV ++  NA C+T++
Sbjct: 199 EDHEYRMVGDDLEDDDDYQEIESEDDNEADEPVYDGDPSLRTPVVEVQSVSRNAPCATVE 258

Query: 157 A--SCYRDINRTGDELRLTLEEIAVGSSFRSKATLEFNLSMFAMRLNFEYHVKKFTKTLL 197
              +    ++  G +  L +++IA+GS FRSK  L F L++FA++ NFE+ VKK T++LL
Sbjct: 259 GVHASLEQMDTIGCDDDL-VDDIALGSLFRSKDELRFTLAVFAIQKNFEFQVKKSTRSLL 318

[Close]

BLAST of Moc06g30810 vs. ExPASy TrEMBL
Match: A0A6J1DWY9 (PKS-NRPS hybrid synthetase CHGG_01239-like OS=Momordica charantia OX=3673 GN=LOC111025208 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 7.8e-37
Identity = 91/143 (63.64%), Postives = 110/143 (76.92%), Query Frame = 0


Query: 56  DEDDENDVGY--EAEDNDGDNDKGNDFESGDTKFENDVGIHNEKKVELVDVDAPSSAPLY 115
           DEDD+ND GY  EAEDNDGDN+ G+ FE  D +F NDVGI NE +VE +DV A SSAPL+
Sbjct: 81  DEDDDND-GYNDEAEDNDGDNEGGDKFEGDDAEFVNDVGIDNEVEVEPMDVYATSSAPLH 140

Query: 116 EVNTIRMNASCSTIQASCYRDINRTGDELRLTLEEIAVGSSFRSKATLEFNLSMFAMRLN 175
           E+N + MNA C+T QASC RDI++T DEL LT E+I V S+F+S   L+FN S+FAM+LN
Sbjct: 141 EMNRVSMNAPCATNQASCSRDISKTVDELGLTSEKIVVWSAFKSNVELQFNQSVFAMKLN 200

Query: 176 FEYHVKKFTKTLLTVGCWEDACK 197
           FEY VKK TK+LLTVGC  D CK
Sbjct: 201 FEYRVKKSTKSLLTVGCCGDGCK 222

[Close]

BLAST of Moc06g30810 vs. ExPASy TrEMBL
Match: A0A6J1C2G8 (protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Momordica charantia OX=3673 GN=LOC111007778 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 66/110 (60.00%), Postives = 74/110 (67.27%), Query Frame = 0


Query: 87  FENDVGIHNEKKVELVDVDAPSSAPLYEVNTIRMNASCSTIQASCYRDINRTGDELRLTL 146
           FENDVGI NEK VE  DV APS APL+EVNT                   RT DEL  T 
Sbjct: 29  FENDVGIDNEKDVEPADVYAPSFAPLHEVNT-----------------RYRTVDELGFTS 88

Query: 147 EEIAVGSSFRSKATLEFNLSMFAMRLNFEYHVKKFTKTLLTVGCWEDACK 197
           EEIAVGS+F+SKA L+FNLS+F MRLNFEYH+KK TK+LLTV C E  C+
Sbjct: 89  EEIAVGSTFKSKADLQFNLSVFTMRLNFEYHMKKSTKSLLTVACCESECE 121

[Close]

BLAST of Moc06g30810 vs. ExPASy TrEMBL
Match: A0A6J1DY41 (uncharacterized protein LOC111025603 OS=Momordica charantia OX=3673 GN=LOC111025603 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.4e-17
Identity = 46/79 (58.23%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 118 IRMNASCSTIQASCYRDINRTGDELRLTLEEIAVGSSFRSKATLEFNLSMFAMRLNFEYH 177
           +  NA C+T QAS  R++ RT DE+ L++++IA+GS+FRSK  L+F LS+FAMR+NFEYH
Sbjct: 2   VSTNAWCATCQASWSREMARTDDEVGLSMKDIAIGSTFRSKEELQFKLSVFAMRVNFEYH 61

Query: 178 VKKFTKTLLTVGCWEDACK 197
           VKK TK+L  +GC ED CK
Sbjct: 62  VKKSTKSLYPIGCSEDGCK 80

[Close]

BLAST of Moc06g30810 vs. ExPASy TrEMBL
Match: A0A6J1DSY0 (uncharacterized protein LOC111023635 OS=Momordica charantia OX=3673 GN=LOC111023635 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13
Identity = 78/246 (31.71%), Postives = 111/246 (45.12%), Query Frame = 0


Query: 11  MSRLFVSYGGQWNEAQSIYDGGIMGGQNVPNYVPLIPIHSTL------------------ 70
           M RLFV YGG+WNEA ++Y+GG MGG +V   +    + S L                  
Sbjct: 1   MRRLFVIYGGKWNEAGTVYEGGXMGGLDVDETITYANLVSALHMLTRIDLDQFDLIVQCV 60

Query: 71  ------------------LGRDEDD-------ENDVGYEAEDNDG------------DND 130
                             L  DE+D       EN+V YE + +D             ++D
Sbjct: 61  YDLIFEITPLADNVISCNLDDDENDDGNGQLYENEVEYEFQSDDEYDYDEYRTEDGVEDD 120

Query: 131 KGNDFESGDT---KFENDVGIHNEKKVELVDVDAPSSAPLYEVNTIRMNASCSTIQASCY 190
            GN +++G+      E+ +  H E + + V          +E +T+  NA   T++    
Sbjct: 121 GGNGYDNGEEDEYHTEDVLDEHYENEGQHV----------HESHTVSGNAPYQTVEEVVX 180

Query: 191 RDINR--TGDELRLTLEEIAVGSSFRSKATLEFNLSMFAMRLNFEYHVKKFTKTLLTVGC 197
           R +    TG+     + EIAV   FRSK  L F LS+ AM+LNF++ VKK TKTL TVGC
Sbjct: 181 RPMQNIITGNGSDF-IGEIAVKGIFRSKEELRFKLSVLAMKLNFKFKVKKSTKTLFTVGC 235

[Close]

BLAST of Moc06g30810 vs. ExPASy TrEMBL
Match: A0A6J1DLB0 (uncharacterized protein LOC111021969 OS=Momordica charantia OX=3673 GN=LOC111021969 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 61/190 (32.11%), Postives = 96/190 (50.53%), Query Frame = 0


Query: 37  QNVPNYVPLIPIHSTL-----------------------LGRDEDDE----NDVGYEAED 96
           QNVP+  PL  +HS++                       LG DE +     +DVG   +D
Sbjct: 139 QNVPSPAPLNHVHSSIRTVHPPSSVKFMTPLTDNVVPCNLGDDEHEHFGQWDDVG---DD 198

Query: 97  NDGD-NDKGNDFESGDTKFENDVGIHNEKKVELVDVDAPSSAPLYEVNTIRMNASCSTIQ 156
            D +    G+D E  D   E +    NE    + D D     P+ EV ++  NA C+T++
Sbjct: 199 EDHEYRMVGDDLEDDDDYQEIESEDDNEADEPVYDGDPSLRTPVVEVQSVSRNAPCATVE 258

Query: 157 A--SCYRDINRTGDELRLTLEEIAVGSSFRSKATLEFNLSMFAMRLNFEYHVKKFTKTLL 197
              +    ++  G +  L +++IA+GS FRSK  L F L++FA++ NFE+ VKK T++LL
Sbjct: 259 GVHASLEQMDTIGCDDDL-VDDIALGSLFRSKDELRFTLAVFAIQKNFEFQVKKSTRSLL 318

The following BLAST results are available for this feature:

BLAST of Moc06g30810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158743.1	1.6e-36	63.64	PKS-NRPS hybrid synthetase CHGG_01239-like [Momordica charantia]	[more]
XP_022135945.1	2.3e-22	60.00	protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia]	[more]
XP_022159183.1	4.9e-17	58.23	uncharacterized protein LOC111025603 [Momordica charantia]	[more]
XP_022156802.1	2.5e-13	31.71	uncharacterized protein LOC111023635 [Momordica charantia]	[more]
XP_022154803.1	2.2e-09	32.11	uncharacterized protein LOC111021969 [Momordica charantia]	[more]

BLAST of Moc06g30810 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g30810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWY9	7.8e-37	63.64	PKS-NRPS hybrid synthetase CHGG_01239-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1C2G8	1.1e-22	60.00	protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1DY41	2.4e-17	58.23	uncharacterized protein LOC111025603 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DSY0	1.2e-13	31.71	uncharacterized protein LOC111023635 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DLB0	1.1e-09	32.11	uncharacterized protein LOC111021969 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]

BLAST of Moc06g30810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g30810.1	Moc06g30810.1	mRNA