Moc06g30470 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g30470
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCopia protein
Locationchr6: 22939741 .. 22940142 (+)
RNA-Seq ExpressionMoc06g30470
SyntenyMoc06g30470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATGCTACAAGCTCTATGATATTCAACATAATTGGTTCTTTGTTTCAAGGGATGTTGTTTTTCGTGAAGGAACTTTTCCTTTCCTTCGTTCACCTTCAATTGGTGTGTTGTCTGGCCCGTTTCCAGAGTTGGTCTTGCACAGGGCTTTTGATTTTCAAGGGGATGTTGTTCCTTCTATGGTTCCTACCACAGTTGTTTTTTATAATGCTCCTGCGGCGCCTATGGATTCTGTTGTTGTTCCTATGGCTATTATGGATTCTATTGACATCAATAATATTCATACTGCTATTGGTTCAGTTGATGTTGATCCCCTTGCTCCTAGTCCATCTATTGTTGCTAATACTAGTGTGGCTGCACCTGATACTTTTACTACTATTGTTCAGCAAGCTAGTATTTGA

mRNA sequence

ATGAAATGCTACAAGCTCTATGATATTCAACATAATTGGTTCTTTGTTTCAAGGGATGTTGTTTTTCGTGAAGGAACTTTTCCTTTCCTTCGTTCACCTTCAATTGGTGTGTTGTCTGGCCCGTTTCCAGAGTTGGTCTTGCACAGGGCTTTTGATTTTCAAGGGGATGTTGTTCCTTCTATGGTTCCTACCACAGTTGTTTTTTATAATGCTCCTGCGGCGCCTATGGATTCTGTTGTTGTTCCTATGGCTATTATGGATTCTATTGACATCAATAATATTCATACTGCTATTGGTTCAGTTGATGTTGATCCCCTTGCTCCTAGTCCATCTATTGTTGCTAATACTAGTGTGGCTGCACCTGATACTTTTACTACTATTGTTCAGCAAGCTAGTATTTGA

Coding sequence (CDS)

ATGAAATGCTACAAGCTCTATGATATTCAACATAATTGGTTCTTTGTTTCAAGGGATGTTGTTTTTCGTGAAGGAACTTTTCCTTTCCTTCGTTCACCTTCAATTGGTGTGTTGTCTGGCCCGTTTCCAGAGTTGGTCTTGCACAGGGCTTTTGATTTTCAAGGGGATGTTGTTCCTTCTATGGTTCCTACCACAGTTGTTTTTTATAATGCTCCTGCGGCGCCTATGGATTCTGTTGTTGTTCCTATGGCTATTATGGATTCTATTGACATCAATAATATTCATACTGCTATTGGTTCAGTTGATGTTGATCCCCTTGCTCCTAGTCCATCTATTGTTGCTAATACTAGTGTGGCTGCACCTGATACTTTTACTACTATTGTTCAGCAAGCTAGTATTTGA

Protein sequence

MKCYKLYDIQHNWFFVSRDVVFREGTFPFLRSPSIGVLSGPFPELVLHRAFDFQGDVVPSMVPTTVVFYNAPAAPMDSVVVPMAIMDSIDINNIHTAIGSVDVDPLAPSPSIVANTSVAAPDTFTTIVQQASI
Homology
BLAST of Moc06g30470 vs. NCBI nr
Match: XP_022845245.1 (uncharacterized protein LOC111368228 [Olea europaea var. sylvestris])

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-06
Identity = 40/99 (40.40%), Postives = 52/99 (52.53%), Query Frame = 0

Query: 1   MKCYKLYDIQHNWFFVSRDVVFREGTFPFLRSPSIGVLSGPFPELVLH-RAFDFQGDVVP 60
           +K YKLYDIQ N+FFV RDV+F E  FPF  +P    ++ PFP+LVL   AFD     V 
Sbjct: 311 VKGYKLYDIQSNFFFVFRDVIFHETLFPFQSTPHPTEITDPFPDLVLPIPAFDLS---VS 370

Query: 61  SMVPTTVVFYNAPAAPMDSVVVPMAIMDSIDINNIHTAI 99
           ++   T    N PA   +    P  I +  D   +H  I
Sbjct: 371 NVADPTTPIANDPAVIHNPTPTPDHIPNLTDSTTMHNPI 406

BLAST of Moc06g30470 vs. NCBI nr
Match: XP_022891847.1 (uncharacterized protein LOC111406698 [Olea europaea var. sylvestris])

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-04
Identity = 33/72 (45.83%), Postives = 40/72 (55.56%), Query Frame = 0

Query: 1   MKCYKLYDIQHNWFFVSRDVVFREGTFPFLRSPSIGVLSGPFPELVLHRAFDFQGDVVPS 60
           +K YKLYDI    FF+SRDVVF E  FPF   P    L  PFP +VL +    + D+ P 
Sbjct: 292 VKGYKLYDISSKTFFISRDVVFHEYLFPFSSIPHENDLIDPFPNIVLPKP---EHDIAP- 351

Query: 61  MVPTTVVFYNAP 73
             P+T V  N P
Sbjct: 352 --PSTSVHDNQP 357

BLAST of Moc06g30470 vs. NCBI nr
Match: XP_022150388.1 (uncharacterized protein LOC111018564 isoform X1 [Momordica charantia] >XP_022150389.1 uncharacterized protein LOC111018564 isoform X1 [Momordica charantia])

HSP 1 Score: 55.8 bits (133), Expect = 3.2e-04
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 0

Query: 1  MKCYKLYDIQHNWFFVSRDVVFREGTFPF--LRSPSIGVLSGPFPELVLHRAFDF 54
          +K Y+L+DI+H  FF+SRDVVF E  FPF  +  P+  V   PFP+ VL +AFDF
Sbjct: 24 VKGYRLFDIEHIKFFLSRDVVFHEQIFPFSSISLPTDSV--DPFPDFVLPKAFDF 76

BLAST of Moc06g30470 vs. NCBI nr
Match: XP_022150390.1 (uncharacterized protein LOC111018564 isoform X2 [Momordica charantia])

HSP 1 Score: 55.8 bits (133), Expect = 3.2e-04
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 0

Query: 1  MKCYKLYDIQHNWFFVSRDVVFREGTFPF--LRSPSIGVLSGPFPELVLHRAFDF 54
          +K Y+L+DI+H  FF+SRDVVF E  FPF  +  P+  V   PFP+ VL +AFDF
Sbjct: 24 VKGYRLFDIEHIKFFLSRDVVFHEQIFPFSSISLPTDSV--DPFPDFVLPKAFDF 76

BLAST of Moc06g30470 vs. NCBI nr
Match: XP_022154919.1 (uncharacterized protein LOC111022065 [Momordica charantia])

HSP 1 Score: 55.5 bits (132), Expect = 4.2e-04
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 0

Query: 1   MKCYKLYDIQHNWFFVSRDVVFREGTFPFLRSPSIGVLSGPFPELVLHRAFD 53
           MK YKLYDI++  FFVSRDV+F E  FPF        +  PFP +V+ +++D
Sbjct: 516 MKGYKLYDIENKRFFVSRDVIFHESIFPFHTVSVNSPIVDPFPGVVIPKSYD 567

BLAST of Moc06g30470 vs. ExPASy TrEMBL
Match: A0A6J1D9X8 (uncharacterized protein LOC111018564 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018564 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-04
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 0

Query: 1  MKCYKLYDIQHNWFFVSRDVVFREGTFPF--LRSPSIGVLSGPFPELVLHRAFDF 54
          +K Y+L+DI+H  FF+SRDVVF E  FPF  +  P+  V   PFP+ VL +AFDF
Sbjct: 24 VKGYRLFDIEHIKFFLSRDVVFHEQIFPFSSISLPTDSV--DPFPDFVLPKAFDF 76

BLAST of Moc06g30470 vs. ExPASy TrEMBL
Match: A0A6J1D8C2 (uncharacterized protein LOC111018564 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111018564 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-04
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 0

Query: 1  MKCYKLYDIQHNWFFVSRDVVFREGTFPF--LRSPSIGVLSGPFPELVLHRAFDF 54
          +K Y+L+DI+H  FF+SRDVVF E  FPF  +  P+  V   PFP+ VL +AFDF
Sbjct: 24 VKGYRLFDIEHIKFFLSRDVVFHEQIFPFSSISLPTDSV--DPFPDFVLPKAFDF 76

BLAST of Moc06g30470 vs. ExPASy TrEMBL
Match: A0A6J1DNP7 (uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022065 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-04
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 0

Query: 1   MKCYKLYDIQHNWFFVSRDVVFREGTFPFLRSPSIGVLSGPFPELVLHRAFD 53
           MK YKLYDI++  FFVSRDV+F E  FPF        +  PFP +V+ +++D
Sbjct: 516 MKGYKLYDIENKRFFVSRDVIFHESIFPFHTVSVNSPIVDPFPGVVIPKSYD 567

BLAST of Moc06g30470 vs. ExPASy TrEMBL
Match: A0A5D3CZP1 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00100 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.6e-04
Identity = 25/51 (49.02%), Postives = 30/51 (58.82%), Query Frame = 0

Query: 1   MKCYKLYDIQHNWFFVSRDVVFREGTFPFLRSPSIGVLSGPFPELVLHRAF 52
           MK YKLYDI+H   F+SRDV+F E TFPF   P   +   P P   L + F
Sbjct: 374 MKAYKLYDIEHKKVFISRDVIFHETTFPFHNIPKNQISIDPLPGFSLPKPF 424

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022845245.12.0e-0640.40uncharacterized protein LOC111368228 [Olea europaea var. sylvestris][more]
XP_022891847.11.4e-0445.83uncharacterized protein LOC111406698 [Olea europaea var. sylvestris][more]
XP_022150388.13.2e-0452.73uncharacterized protein LOC111018564 isoform X1 [Momordica charantia] >XP_022150... [more]
XP_022150390.13.2e-0452.73uncharacterized protein LOC111018564 isoform X2 [Momordica charantia][more]
XP_022154919.14.2e-0448.08uncharacterized protein LOC111022065 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D9X81.6e-0452.73uncharacterized protein LOC111018564 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1D8C21.6e-0452.73uncharacterized protein LOC111018564 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DNP72.0e-0448.08uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A5D3CZP12.6e-0449.02Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00100 P... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g30470.1Moc06g30470.1mRNA