Moc06g30180 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g30180
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Locationchr6: 22706667 .. 22707668 (-)
RNA-Seq ExpressionMoc06g30180
SyntenyMoc06g30180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACAGGACATCGATAAGATTCAGGAGCAAGTCACAGAAATTTTCAATGTCTTAAAGAATATTGTTACAGTTGAGGACATTTCTCAACCTAACAATTTAGTCGAACCTCATGATAATTCATCACCTAGGGTGGACCCACCTCTTTGTCAGCCAACAGAGGGTTTCTCCCTGCATAATTCGTCACATGAAGCTCAGCTTTCCAAGAAAGGCCAACAAGCTCCTACAATATGTCAGGTTGAATTTACACTCCAAGATGGACAAACATCAAAGGTCATTCACTCAAATATTTTTAAAGGTAAAGAAAGAGAAAATGTTACCAATGGAAATGCTGAAGAAACTGCAGGGAAAGAATATGCTCAAAGATGGGGAGAAGCAATAGAACAGTTGCCGGTGCCTTTAATTAATAAAGAGTCGCGTCCTGAAACGAATATAAGCTCTACTAAAAGGAAAAATAAAGTCCAGGCAGTAATCTCGAAGCGCAAGTGGAGGCACCAACAAGGATCTGCGGTATACAATCCATCTACAGTACGCGTAAACTCATTGGCTCTGCAGAATGATCCACAAACATTACCTGACAATCATAGTAGTCGGAGACAACTAAAGCGAGAGAGCTTTCATTCGATCCCAATATCCTATACCGAGTTGTTATCCCAATTATTTCAAGGTAATCTATTAGCTCCCGTACCCGTAGAGACATTACAACCACCTTATCCAAAGTGGTACGACCCGTATGTTCGTTGTGATTACCATGCAGGAGTTGTAGGTCATTCAACTGAGAACTGTACTTCACTGAAGCATAAAGTGCAAGTGCTAATGAGGGCAAGATGGCTAAAGTTTTCAAAGGAAGATGGTCAATACATGAAGCACTGGAATCATGAGTGTACAAGATTATTAAAATCAATGTTGACCTATTGCTTCGCATTATCAATAAAGTTTATTTCTTCTTTGAAGTCATCTTTCAGATTGCTTGCTAGTGTTAAAATGGCAATGAAGCTTTAG

mRNA sequence

ATGAGACAGGACATCGATAAGATTCAGGAGCAAGTCACAGAAATTTTCAATGTCTTAAAGAATATTGTTACAGTTGAGGACATTTCTCAACCTAACAATTTAGTCGAACCTCATGATAATTCATCACCTAGGGTGGACCCACCTCTTTGTCAGCCAACAGAGGGTTTCTCCCTGCATAATTCGTCACATGAAGCTCAGCTTTCCAAGAAAGGCCAACAAGCTCCTACAATATGTCAGGTTGAATTTACACTCCAAGATGGACAAACATCAAAGGTCATTCACTCAAATATTTTTAAAGGTAAAGAAAGAGAAAATGTTACCAATGGAAATGCTGAAGAAACTGCAGGGAAAGAATATGCTCAAAGATGGGGAGAAGCAATAGAACAGTTGCCGGTGCCTTTAATTAATAAAGAGTCGCGTCCTGAAACGAATATAAGCTCTACTAAAAGGAAAAATAAAGTCCAGGCAGTAATCTCGAAGCGCAAGTGGAGGCACCAACAAGGATCTGCGGTATACAATCCATCTACAGTACGCGTAAACTCATTGGCTCTGCAGAATGATCCACAAACATTACCTGACAATCATAGTAGTCGGAGACAACTAAAGCGAGAGAGCTTTCATTCGATCCCAATATCCTATACCGAGTTGTTATCCCAATTATTTCAAGGTAATCTATTAGCTCCCGTACCCGTAGAGACATTACAACCACCTTATCCAAAGTGGTACGACCCGTATGTTCGTTGTGATTACCATGCAGGAGTTGTAGGTCATTCAACTGAGAACTGTACTTCACTGAAGCATAAAGTGCAAGTGCTAATGAGGGCAAGATGGCTAAAGTTTTCAAAGGAAGATGGTCAATACATGAAGCACTGGAATCATGAGTGTACAAGATTATTAAAATCAATGTTGACCTATTGCTTCGCATTATCAATAAAGTTTATTTCTTCTTTGAAGTCATCTTTCAGATTGCTTGCTAGTGTTAAAATGGCAATGAAGCTTTAG

Coding sequence (CDS)

ATGAGACAGGACATCGATAAGATTCAGGAGCAAGTCACAGAAATTTTCAATGTCTTAAAGAATATTGTTACAGTTGAGGACATTTCTCAACCTAACAATTTAGTCGAACCTCATGATAATTCATCACCTAGGGTGGACCCACCTCTTTGTCAGCCAACAGAGGGTTTCTCCCTGCATAATTCGTCACATGAAGCTCAGCTTTCCAAGAAAGGCCAACAAGCTCCTACAATATGTCAGGTTGAATTTACACTCCAAGATGGACAAACATCAAAGGTCATTCACTCAAATATTTTTAAAGGTAAAGAAAGAGAAAATGTTACCAATGGAAATGCTGAAGAAACTGCAGGGAAAGAATATGCTCAAAGATGGGGAGAAGCAATAGAACAGTTGCCGGTGCCTTTAATTAATAAAGAGTCGCGTCCTGAAACGAATATAAGCTCTACTAAAAGGAAAAATAAAGTCCAGGCAGTAATCTCGAAGCGCAAGTGGAGGCACCAACAAGGATCTGCGGTATACAATCCATCTACAGTACGCGTAAACTCATTGGCTCTGCAGAATGATCCACAAACATTACCTGACAATCATAGTAGTCGGAGACAACTAAAGCGAGAGAGCTTTCATTCGATCCCAATATCCTATACCGAGTTGTTATCCCAATTATTTCAAGGTAATCTATTAGCTCCCGTACCCGTAGAGACATTACAACCACCTTATCCAAAGTGGTACGACCCGTATGTTCGTTGTGATTACCATGCAGGAGTTGTAGGTCATTCAACTGAGAACTGTACTTCACTGAAGCATAAAGTGCAAGTGCTAATGAGGGCAAGATGGCTAAAGTTTTCAAAGGAAGATGGTCAATACATGAAGCACTGGAATCATGAGTGTACAAGATTATTAAAATCAATGTTGACCTATTGCTTCGCATTATCAATAAAGTTTATTTCTTCTTTGAAGTCATCTTTCAGATTGCTTGCTAGTGTTAAAATGGCAATGAAGCTTTAG

Protein sequence

MRQDIDKIQEQVTEIFNVLKNIVTVEDISQPNNLVEPHDNSSPRVDPPLCQPTEGFSLHNSSHEAQLSKKGQQAPTICQVEFTLQDGQTSKVIHSNIFKGKERENVTNGNAEETAGKEYAQRWGEAIEQLPVPLINKESRPETNISSTKRKNKVQAVISKRKWRHQQGSAVYNPSTVRVNSLALQNDPQTLPDNHSSRRQLKRESFHSIPISYTELLSQLFQGNLLAPVPVETLQPPYPKWYDPYVRCDYHAGVVGHSTENCTSLKHKVQVLMRARWLKFSKEDGQYMKHWNHECTRLLKSMLTYCFALSIKFISSLKSSFRLLASVKMAMKL
Homology
[Close]
BLAST of Moc06g30180 vs. NCBI nr
Match: XP_022153553.1 (uncharacterized protein LOC111021029 [Momordica charantia])

HSP 1 Score: 304.3 bits (778), Expect = 1.3e-78
Identity = 160/225 (71.11%), Postives = 181/225 (80.44%), Query Frame = 0 

Query: 1   MRQDIDKIQEQVTEIFNVLKNIVTVEDISQPNNLVEPHDNSSPRVDPPLCQPTEGFSLHN 60
           MRQDID IQ+QV +I NVLKNIVTV   SQPNNLVEP++NSSPRVDPPLCQ  EGF  H+
Sbjct: 49  MRQDIDNIQKQVMKILNVLKNIVTVGGTSQPNNLVEPYNNSSPRVDPPLCQSKEGFPQHS 108

Query: 61  SSHEAQLSKKGQQAPTICQVEFTLQDGQTSKVIHSNIFKGKERENVTNGNAEETAGKEYA 120
           SSH+AQLSKKGQQ PT CQVEFT +D QT KV +S+  KG+E+ENVT             
Sbjct: 109 SSHDAQLSKKGQQVPTNCQVEFTFKDEQTPKVNYSDNLKGEEKENVT------------- 168

Query: 121 QRWGEAIEQLPVPLINKESRPETNISSTKRKNKVQAVISKRKWRHQQGSAVYNPSTVRVN 180
           QRWG+AIEQLPVPLINKE  P+ N SS KRKNKV AV+SKRK ++QQG   Y+PSTV +N
Sbjct: 169 QRWGKAIEQLPVPLINKEPHPKMNKSSIKRKNKVLAVVSKRKRKYQQGFVAYSPSTVPIN 228

Query: 181 SLALQNDPQTLPDNHSSRRQLKRESFHSIPISYTELLSQLFQGNL 226
           S+ LQ+DPQTLP+NHSSRRQLKRESFHSIP SYTELLSQLFQGNL
Sbjct: 229 SMTLQDDPQTLPNNHSSRRQLKRESFHSIPTSYTELLSQLFQGNL 260

[Close]
BLAST of Moc06g30180 vs. NCBI nr
Match: XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-26
Identity = 58/112 (51.79%), Postives = 78/112 (69.64%), Query Frame = 0 

Query: 174 PSTVRVNSLALQNDPQTLPDNHSSRRQLKRESFHSIPISYTELLSQLFQGNLLAPVPVET 233
           P++        Q++     +  ++R   K+  F  IP++YTELL QLFQ N LAPVPV+ 
Sbjct: 316 PASQNFQPRGQQHNTLYTQEQQTNRGARKQTQFDPIPMTYTELLPQLFQNNQLAPVPVDP 375

Query: 234 LQPPYPKWYDPYVRCDYHAGVVGHSTENCTSLKHKVQVLMRARWLKFSKEDG 286
           +QPPYP+WYD   RCDYHAG +GHSTENCT+LK++VQ L++A WL F KE+G
Sbjct: 376 IQPPYPRWYDTNARCDYHAGAIGHSTENCTALKYRVQALIKAGWLNFKKENG 427

[Close]
BLAST of Moc06g30180 vs. NCBI nr
Match: XP_022147189.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia])

HSP 1 Score: 125.9 bits (315), Expect = 6.3e-25
Identity = 54/90 (60.00%), Postives = 68/90 (75.56%), Query Frame = 0 

Query: 196 SSRRQLKRESFHSIPISYTELLSQLFQGNLLAPVPVETLQPPYPKWYDPYVRCDYHAGVV 255
           ++R   K+  F  IP++YTELL QLFQ N LAPVPV+ +QPPYP+WYD   RCDYHAG +
Sbjct: 378 NNRGARKQTQFDPIPMTYTELLPQLFQNNQLAPVPVDPIQPPYPRWYDANARCDYHAGAI 437

Query: 256 GHSTENCTSLKHKVQVLMRARWLKFSKEDG 286
            HSTENCT LK++VQ L++A W  F KE+G
Sbjct: 438 XHSTENCTXLKYRVQALIKAGWXNFKKENG 467

[Close]
BLAST of Moc06g30180 vs. NCBI nr
Match: XP_022155098.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia])

HSP 1 Score: 123.2 bits (308), Expect = 4.1e-24
Identity = 57/98 (58.16%), Postives = 73/98 (74.49%), Query Frame = 0 

Query: 193 DNHSSRRQLKRESFHSIPISYTELLSQLFQGNLLAPVPVETLQPPYPKWYDPYVRCDYHA 252
           +N S+R+Q     F  IP++YTELL QLFQ N LAPVPV+ +QPPYP WYD   RCDYHA
Sbjct: 440 NNRSTRKQ---SQFDPIPMTYTELLPQLFQNNQLAPVPVDPIQPPYPGWYDANXRCDYHA 499

Query: 253 GVVGHSTENCTSLKHKVQVLMRARWLKFSKEDGQYMKH 291
           G +GHSTENCT+LK++VQ L++A  L F KE+   +K+
Sbjct: 500 GAIGHSTENCTALKYRVQALIKAGXLTFKKENXPDVKN 534

[Close]
BLAST of Moc06g30180 vs. NCBI nr
Match: KAA0054657.1 (uncharacterized protein E6C27_scaffold24G004750 [Cucumis melo var. makuwa] >TYK08606.1 uncharacterized protein E5676_scaffold3734G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 4.1e-24
Identity = 74/174 (42.53%), Postives = 94/174 (54.02%), Query Frame = 0 

Query: 117 KEYAQRWGEAIEQLPVPLINKESRPETNISSTKRKNKVQAVISKRKWRHQQGSAVYNPST 176
           KEYAQRW E   Q+  PL +KE        +T R      ++            +     
Sbjct: 194 KEYAQRWRELATQVQPPLTDKELM--AMFINTLRAPYYDRMVGSVSINFSDVITIGERIE 253

Query: 177 VRVN-SLALQN---DPQTLPDNHSSRRQLKRESFHSIPISYTELLSQLFQGNLLAPVPVE 236
              N S + QN    P       ++R   K+  F  IP+SYTELL QL + + +A VP E
Sbjct: 254 FETNYSPSYQNRGKSPFGQATQRNARNSWKQTYFDPIPMSYTELLPQLLKSHQVAIVPQE 313

Query: 237 TLQPPYPKWYDPYVRCDYHAGVVGHSTENCTSLKHKVQVLMRARWLKFSKEDGQ 287
            LQPPYPKWYDP V+ +YHAG VGHSTENC  LK KVQ L++ARWLKF K + +
Sbjct: 314 PLQPPYPKWYDPNVKREYHAGAVGHSTENCFPLKAKVQSLVKARWLKFKKTEAE 365

[Close]
BLAST of Moc06g30180 vs. ExPASy TrEMBL
Match: A0A6J1DHS7 (uncharacterized protein LOC111021029 OS=Momordica charantia OX=3673 GN=LOC111021029 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 6.3e-79
Identity = 160/225 (71.11%), Postives = 181/225 (80.44%), Query Frame = 0 

Query: 1   MRQDIDKIQEQVTEIFNVLKNIVTVEDISQPNNLVEPHDNSSPRVDPPLCQPTEGFSLHN 60
           MRQDID IQ+QV +I NVLKNIVTV   SQPNNLVEP++NSSPRVDPPLCQ  EGF  H+
Sbjct: 49  MRQDIDNIQKQVMKILNVLKNIVTVGGTSQPNNLVEPYNNSSPRVDPPLCQSKEGFPQHS 108

Query: 61  SSHEAQLSKKGQQAPTICQVEFTLQDGQTSKVIHSNIFKGKERENVTNGNAEETAGKEYA 120
           SSH+AQLSKKGQQ PT CQVEFT +D QT KV +S+  KG+E+ENVT             
Sbjct: 109 SSHDAQLSKKGQQVPTNCQVEFTFKDEQTPKVNYSDNLKGEEKENVT------------- 168

Query: 121 QRWGEAIEQLPVPLINKESRPETNISSTKRKNKVQAVISKRKWRHQQGSAVYNPSTVRVN 180
           QRWG+AIEQLPVPLINKE  P+ N SS KRKNKV AV+SKRK ++QQG   Y+PSTV +N
Sbjct: 169 QRWGKAIEQLPVPLINKEPHPKMNKSSIKRKNKVLAVVSKRKRKYQQGFVAYSPSTVPIN 228

Query: 181 SLALQNDPQTLPDNHSSRRQLKRESFHSIPISYTELLSQLFQGNL 226
           S+ LQ+DPQTLP+NHSSRRQLKRESFHSIP SYTELLSQLFQGNL
Sbjct: 229 SMTLQDDPQTLPNNHSSRRQLKRESFHSIPTSYTELLSQLFQGNL 260

[Close]
BLAST of Moc06g30180 vs. ExPASy TrEMBL
Match: A0A6J1E2J7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 5.6e-27
Identity = 58/112 (51.79%), Postives = 78/112 (69.64%), Query Frame = 0 

Query: 174 PSTVRVNSLALQNDPQTLPDNHSSRRQLKRESFHSIPISYTELLSQLFQGNLLAPVPVET 233
           P++        Q++     +  ++R   K+  F  IP++YTELL QLFQ N LAPVPV+ 
Sbjct: 316 PASQNFQPRGQQHNTLYTQEQQTNRGARKQTQFDPIPMTYTELLPQLFQNNQLAPVPVDP 375

Query: 234 LQPPYPKWYDPYVRCDYHAGVVGHSTENCTSLKHKVQVLMRARWLKFSKEDG 286
           +QPPYP+WYD   RCDYHAG +GHSTENCT+LK++VQ L++A WL F KE+G
Sbjct: 376 IQPPYPRWYDTNARCDYHAGAIGHSTENCTALKYRVQALIKAGWLNFKKENG 427

[Close]
BLAST of Moc06g30180 vs. ExPASy TrEMBL
Match: A0A6J1D099 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.1e-25
Identity = 54/90 (60.00%), Postives = 68/90 (75.56%), Query Frame = 0 

Query: 196 SSRRQLKRESFHSIPISYTELLSQLFQGNLLAPVPVETLQPPYPKWYDPYVRCDYHAGVV 255
           ++R   K+  F  IP++YTELL QLFQ N LAPVPV+ +QPPYP+WYD   RCDYHAG +
Sbjct: 378 NNRGARKQTQFDPIPMTYTELLPQLFQNNQLAPVPVDPIQPPYPRWYDANARCDYHAGAI 437

Query: 256 GHSTENCTSLKHKVQVLMRARWLKFSKEDG 286
            HSTENCT LK++VQ L++A W  F KE+G
Sbjct: 438 XHSTENCTXLKYRVQALIKAGWXNFKKENG 467

[Close]
BLAST of Moc06g30180 vs. ExPASy TrEMBL
Match: A0A5A7UJ84 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G00290 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.0e-24
Identity = 74/174 (42.53%), Postives = 94/174 (54.02%), Query Frame = 0 

Query: 117 KEYAQRWGEAIEQLPVPLINKESRPETNISSTKRKNKVQAVISKRKWRHQQGSAVYNPST 176
           KEYAQRW E   Q+  PL +KE        +T R      ++            +     
Sbjct: 194 KEYAQRWRELATQVQPPLTDKELM--AMFINTLRAPYYDRMVGSVSINFSDVITIGERIE 253

Query: 177 VRVN-SLALQN---DPQTLPDNHSSRRQLKRESFHSIPISYTELLSQLFQGNLLAPVPVE 236
              N S + QN    P       ++R   K+  F  IP+SYTELL QL + + +A VP E
Sbjct: 254 FETNYSPSYQNRGKSPFGQATQRNARNSWKQTYFDPIPMSYTELLPQLLKSHQVAIVPQE 313

Query: 237 TLQPPYPKWYDPYVRCDYHAGVVGHSTENCTSLKHKVQVLMRARWLKFSKEDGQ 287
            LQPPYPKWYDP V+ +YHAG VGHSTENC  LK KVQ L++ARWLKF K + +
Sbjct: 314 PLQPPYPKWYDPNVKREYHAGAVGHSTENCFPLKAKVQSLVKARWLKFKKTEAE 365

[Close]
BLAST of Moc06g30180 vs. ExPASy TrEMBL
Match: A0A6J1DM29 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia OX=3673 GN=LOC111022231 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.0e-24
Identity = 57/98 (58.16%), Postives = 73/98 (74.49%), Query Frame = 0 

Query: 193 DNHSSRRQLKRESFHSIPISYTELLSQLFQGNLLAPVPVETLQPPYPKWYDPYVRCDYHA 252
           +N S+R+Q     F  IP++YTELL QLFQ N LAPVPV+ +QPPYP WYD   RCDYHA
Sbjct: 440 NNRSTRKQ---SQFDPIPMTYTELLPQLFQNNQLAPVPVDPIQPPYPGWYDANXRCDYHA 499

Query: 253 GVVGHSTENCTSLKHKVQVLMRARWLKFSKEDGQYMKH 291
           G +GHSTENCT+LK++VQ L++A  L F KE+   +K+
Sbjct: 500 GAIGHSTENCTALKYRVQALIKAGXLTFKKENXPDVKN 534

The following BLAST results are available for this feature:
BLAST of Moc06g30180 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022153553.11.3e-7871.11uncharacterized protein LOC111021029 [Momordica charantia][more]
XP_022158986.11.2e-2651.79LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia][more]
XP_022147189.16.3e-2560.00LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia][more]
XP_022155098.14.1e-2458.16LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica ch... [more]
KAA0054657.14.1e-2442.53uncharacterized protein E6C27_scaffold24G004750 [Cucumis melo var. makuwa] >TYK0... [more]
BLAST of Moc06g30180 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc06g30180 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DHS76.3e-7971.11uncharacterized protein LOC111021029 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A6J1E2J75.6e-2751.79Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1[more]
A0A6J1D0993.1e-2560.00Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1[more]
A0A5A7UJ842.0e-2442.53Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A6J1DM292.0e-2458.16LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia... [more]
BLAST of Moc06g30180 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g30180.1Moc06g30180.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071897 DNA biosynthetic process
cellular_component GO:0110165 cellular anatomical entity
molecular_function GO:0034061 DNA polymerase activity
molecular_function GO:0003676 nucleic acid binding