Moc06g19620 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g19620
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr6: 15431328 .. 15433554 (-)
RNA-Seq ExpressionMoc06g19620
SyntenyMoc06g19620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGGGACCGGTGCTACTGCAGCAGCCATCAACGACAACAAGTGGCGTCATCGGATGAAGACTAGACCTATTTTTGAGTTAAGCCAGGAGTGTCTTTCTCGAATGAAAACATCAATCATGGTCTGTTCCATAAAGCTGAGCTTTTCGGTTCGCTCCCCTGGCCTTCTTACTGGTCTACCTCCTTTCTCTTGATGGAATATAACAATGGCTAGTCTGTGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTGAGTAGGTAAAGGAAGGGAAATCAACCGAGATCCCGTTAGTAGCTGCGAGCAAGAGCGGATTGGGGGTTTCAAGAAAAACAAACACGAAGCTTCGTTCCTCAGCAAAGGGTTCACTTCTTTTTCGCCAGGTTGTAGCTTTAGGGATTTTTGTTATGCTACTTTAGGATTAAAAAAAGGCTTCAAGCTCAAGTGCAAGCTGAGTAAACTTGTTCCGTTTTACTCCTATCAAAAAACTAACCCTTCAACATGGATGATAGAAATGCTAACCAAGTGACACTCTTACTTATACACTAATAATGGAGAAAGGCCATGGGTACTCATGCTGATATGAGACCAAAGATACATAAGCATCATGTTACAGATAGGATAAGAGGGCTCTTCAAGAGTCGAGCTATTGTGGTAGTAAAGGCTTCCAACAGTGATAGCTGCCCCCACCAGATGGGCCACCCAAAACCTGGAGCTAACATTTCAATTGGAAATCCACGTCGGATCGCGGCGAGACGAAAAGGGCAGACTGAAGCAGAGGATCACAAAATGCAACACAACAAGGGGCCTCTTAAACGATTCCCGTCTCTTAGAAAGAGCCCCTAAACGATCGGACCAGACAGGTACAGGTAGCTTGACCACCTTACTCGTCATTGAAACACAAGCTGGAGACATATCGACCTATATTCCCACCAGAAAGAACCTCTTGGTGGAGTCCCCCCGAGGACAGAATAGCACAACTTAGTGACTAAGAGCGGAGGGAGAGCCCGTTGCGCCTTGTTTTTGTTTGACCGGCCTATCTTCTTTCTAGAAGCAAGCTCCCTCCGATTGTCAAGTCCTTGGGCGGCTCTCGATTTTTTAGCATGTTGGGACCTTCCCTTTCACCTAAACTGGTCAAGAGAGATGAACCCGCACCACATACATTTTCTAACCTTCGAATCGAAACCCCCGGGTTATATCTCTGAATCAGCTTATTCACTAGACTGTTAAGCCATTGAGTCCCTATAATGGGTTGACTTTGGATCATTCAGTGGGTACCAAGATTGGTGGTTCGACATTCGACAGTTTTAGTCATAGACACAATATTGCTGATCTCCTCAGCTATGCGAAAGCCATGTTCCTTCATCGATTGGTTATTCCTCCCCGTTCGTATCTCTTTTTCCCGACTCGAAATGACCGACTCAAATGGGCGAGGGCTCTCTATTTGCTTGCAATACCGGCTGTTCGCCTTTAGTTAGAAGTAGAAGTAGAAGGCGCCACGCTGGGGTGCGAAAGCATGGGGATCGAACAGGATTAGATACTCTGGTAGTCCATGTTGTAAACGATGAGTGTTCGCCCTTGGTCTACCTGAGTCAACCATCCACTCTCGAGATTCATATTGATCAATCGATCTCCTCGACTGGGCCAGCATTGATGAAAAAATGACAAAAGAGATCAATTCCATGAGTGGCTGTAAACTGAGAGAAGGCTGATGAGACATATTCCCACCTGAATATTAGTGCAAAACAGGAATCTGATGACAAAAGAATCAATTTGCAACCTTAGCTTTAAAAAGCCGAAAAGAATTGAAGTACCCCCTATCTAGTAAGGTTTGTGTTTATCATTTTACTAAAAAAAATCAGTCATTTAGAATTTCATATTAAAAAAATATGTGACGATTTTTCTTTAAATAAGAGATTGGCCATCGCCCAAAGGCGGCAAAGGTTGAGGTGCATTGATCCGACTACAAAATCTGTATCTCTATATGTCGTTTTCGATGAGGCATCATCATGGTGGTCTTCTAAAAATGTAGTACTCCGGATTCCGGGATGCTAGACTTCCATATGCGGGCACAAGCACCTGAGCAACAAGAGCCTGATATTGTGAGCTTTATCGAGGAATTTTCCATCTCAGTACGAGCTTTCCAAAGAAATAGCTTAGTAGCCACATTAGCCGCCACTTGGGATGATTTTAGGCACGACGTATTCCCTTTGGCTATATAA

mRNA sequence

ATGATCGGGACCGGTGCTACTGCAGCAGCCATCAACGACAACAAGTGGCGTCATCGGATGAAGACTAGACCTATTTTTGAGTTAAGCCAGGAGTGTCTTTCTCGAATGAAAACATCAATCATGGTAAAGGAAGGGAAATCAACCGAGATCCCGTTAGTAGCTGCGAGCAAGAGCGGATTGGGGGTTTCAAGAAAAACAAACACGAAGCTTCGTTCCTCAGCAAAGGGTTCACTTCTTTTTCGCCAGGCCATGGGTACTCATGCTGATATGAGACCAAAGATACATAAGCATCATGTTACAGATAGGATAAGAGGGCTCTTCAAGAGTCGAGCTATTGTGGTAGTAAAGGCTTCCAACAGTGATAGCTGCCCCCACCAGATGGGCCACCCAAAACCTGGAGCTAACATTTCAATTGGAAATCCACGTCGGATCGCGGCGAGACGAAAAGGGCAGACTGAAGCAGAGGATCACAAAATGCAACACAACAAGGGGCCTCTTAAACGATTCCCTACTCCGGATTCCGGGATGCTAGACTTCCATATGCGGGCACAAGCACCTGAGCAACAAGAGCCTGATATTGTGAGCTTTATCGAGGAATTTTCCATCTCAGTACGAGCTTTCCAAAGAAATAGCTTAGTAGCCACATTAGCCGCCACTTGGGATGATTTTAGGCACGACGTATTCCCTTTGGCTATATAA

Coding sequence (CDS)

ATGATCGGGACCGGTGCTACTGCAGCAGCCATCAACGACAACAAGTGGCGTCATCGGATGAAGACTAGACCTATTTTTGAGTTAAGCCAGGAGTGTCTTTCTCGAATGAAAACATCAATCATGGTAAAGGAAGGGAAATCAACCGAGATCCCGTTAGTAGCTGCGAGCAAGAGCGGATTGGGGGTTTCAAGAAAAACAAACACGAAGCTTCGTTCCTCAGCAAAGGGTTCACTTCTTTTTCGCCAGGCCATGGGTACTCATGCTGATATGAGACCAAAGATACATAAGCATCATGTTACAGATAGGATAAGAGGGCTCTTCAAGAGTCGAGCTATTGTGGTAGTAAAGGCTTCCAACAGTGATAGCTGCCCCCACCAGATGGGCCACCCAAAACCTGGAGCTAACATTTCAATTGGAAATCCACGTCGGATCGCGGCGAGACGAAAAGGGCAGACTGAAGCAGAGGATCACAAAATGCAACACAACAAGGGGCCTCTTAAACGATTCCCTACTCCGGATTCCGGGATGCTAGACTTCCATATGCGGGCACAAGCACCTGAGCAACAAGAGCCTGATATTGTGAGCTTTATCGAGGAATTTTCCATCTCAGTACGAGCTTTCCAAAGAAATAGCTTAGTAGCCACATTAGCCGCCACTTGGGATGATTTTAGGCACGACGTATTCCCTTTGGCTATATAA

Protein sequence

MIGTGATAAAINDNKWRHRMKTRPIFELSQECLSRMKTSIMVKEGKSTEIPLVAASKSGLGVSRKTNTKLRSSAKGSLLFRQAMGTHADMRPKIHKHHVTDRIRGLFKSRAIVVVKASNSDSCPHQMGHPKPGANISIGNPRRIAARRKGQTEAEDHKMQHNKGPLKRFPTPDSGMLDFHMRAQAPEQQEPDIVSFIEEFSISVRAFQRNSLVATLAATWDDFRHDVFPLAI
Homology
[Close]
BLAST of Moc06g19620 vs. NCBI nr
Match: KAG9157571.1 (hypothetical protein Leryth_022799 [Lithospermum erythrorhizon])

HSP 1 Score: 69.3 bits (168), Expect = 4.9e-08
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = 0 

Query: 126 QMGHPKPGANISIGNPRRIAARRKGQTEAEDHKMQHNKGPLKRF 170
           +MG PKPGA+I IGN RR+ A RK QTEAEDHKMQHNKG  KRF
Sbjct: 26  RMGRPKPGADIPIGNQRRVPAIRKRQTEAEDHKMQHNKGRTKRF 69

[Close]
BLAST of Moc06g19620 vs. NCBI nr
Match: KAF3945961.1 (hypothetical protein CMV_027718 [Castanea mollissima])

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-06
Identity = 34/43 (79.07%), Postives = 35/43 (81.40%), Query Frame = 0 

Query: 127 MGHPKPGANISIGNPRRIAARRKGQTEAEDHKM-QHNKGPLKR 169
           MG PKPGA+ISIGN RRI A RK QTEAEDHKM QHNKG  KR
Sbjct: 1   MGRPKPGADISIGNQRRIPAIRKTQTEAEDHKMQQHNKGRTKR 43

[Close]
BLAST of Moc06g19620 vs. NCBI nr
Match: WP_131796644.1 (hypothetical protein [Candidatus Frankia datiscae])

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-05
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 86  THADMRPKIHKHHVTDRIRGLFKSRAIVVVKASNSDSCPH 126
           THADMRP+I KHHV DRIRG+F+S AIVVVK S+ +S  H
Sbjct: 17  THADMRPEIEKHHVKDRIRGVFESLAIVVVKESHEESGDH 56

[Close]
BLAST of Moc06g19620 vs. NCBI nr
Match: CAB4072341.1 (unnamed protein product [Lactuca saligna] >CAB4075620.1 unnamed protein product [Lactuca saligna] >CAB4077245.1 unnamed protein product [Lactuca saligna])

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-04
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 0 

Query: 127 MGHPKPGANISIGNPRRIAARRKGQTEAEDHKMQHNKGPLK--RFPTPDSGMLDFHMRAQ 186
           MG PKPGA+I IGN RR  A R+ QTEAE+ KMQHNKG  K  R    +S  ++   R +
Sbjct: 1   MGRPKPGADIEIGNQRRTPAIRRRQTEAEEQKMQHNKGRTKGLREGRSESIRMETGRRGR 60

Query: 187 APEQQEPDIV 195
               +E ++V
Sbjct: 61  LSNAKEKEVV 70

[Close]
BLAST of Moc06g19620 vs. NCBI nr
Match: KAG5553564.1 (hypothetical protein RHGRI_011445 [Rhododendron griersonianum])

HSP 1 Score: 55.5 bits (132), Expect = 7.3e-04
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 131 KPGANISIGNPRRIAARRKGQTEAEDHKMQHNKGPLKR 169
           +PGA+I IGN RRI A RK QTEAEDHKMQ NKG  KR
Sbjct: 3   RPGADIEIGNQRRIPAIRKTQTEAEDHKMQDNKGRTKR 40

[Close]
BLAST of Moc06g19620 vs. ExPASy TrEMBL
Match: A0A6S7KR38 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS1270 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.5e-05
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 0 

Query: 127 MGHPKPGANISIGNPRRIAARRKGQTEAEDHKMQHNKGPLK--RFPTPDSGMLDFHMRAQ 186
           MG PKPGA+I IGN RR  A R+ QTEAE+ KMQHNKG  K  R    +S  ++   R +
Sbjct: 1   MGRPKPGADIEIGNQRRTPAIRRRQTEAEEQKMQHNKGRTKGLREGRSESIRMETGRRGR 60

Query: 187 APEQQEPDIV 195
               +E ++V
Sbjct: 61  LSNAKEKEVV 70

The following BLAST results are available for this feature:
BLAST of Moc06g19620 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG9157571.14.9e-0875.00hypothetical protein Leryth_022799 [Lithospermum erythrorhizon][more]
KAF3945961.12.1e-0679.07hypothetical protein CMV_027718 [Castanea mollissima][more]
WP_131796644.13.0e-0570.00hypothetical protein [Candidatus Frankia datiscae][more]
CAB4072341.11.1e-0447.14unnamed protein product [Lactuca saligna] >CAB4075620.1 unnamed protein product ... [more]
KAG5553564.17.3e-0473.68hypothetical protein RHGRI_011445 [Rhododendron griersonianum][more]
BLAST of Moc06g19620 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc06g19620 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6S7KR385.5e-0547.14Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS1270 PE=4 SV=1[more]
BLAST of Moc06g19620 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..169
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..163

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g19620.1Moc06g19620.1mRNA