Moc06g19540 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g19540
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionexosome complex component CSL4
Locationchr6: 15373664 .. 15386285 (-)
RNA-Seq ExpressionMoc06g19540
SyntenyMoc06g19540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGAGGCCGAGGAGACGCAGTTCGTGACTCCCGGAGAAGTGCTCGGAAAGCCTTCGGACTTGAAATCTGGGAAAGGAGCTTATGTTGCCAATAACACTGTTTATGCTTCTCTTTCTGGTTTCCGCCGCATTCTTCCTCCTCCACCCAACTCTTCCGACTCGGTACTCCCTTTTTACTTCTGTTCACACTTTCTTTTTGATTTTTGAGATTTGGGTTCACCCCCTATGAGGTTTCTTTTGGAATTTGAAAGAATTTTGATGTGAACTTTGGAGGATGAGAACTTAGATTGTGGAGGGGGAGAGTAACAACACTTGTGTTATTTCCTTCGGATCATGTAGTAGTTTCTTGGTTAGATAGGTTCTATTTTGACGCCTACTAACTAAGACTTCTCCAGAAAGACAAGATTGAACTATGGGGAGATTGAAAAAAGTATTACCTTGGGTAGTTGTGGTGTTTGGTGAAAAAATTATTATCTTGGAATTATTGTATTATATTAGGGTCAGGACAAGAAGCAAATATTTCTCTTGTTTTCTCTTAGACTACAGTGAATACGACATTTTGGGAAGAGTTTTGAACCGGTTTATTTGGTTTCCTTCCTCTTTCTTTCAAGCATGGTTGATGCTGTATGAGATAGTAACCTCTACTTAATAGTAATACTGGTCACATAAGCACGTTATAGAGGATACTTTATTTTCGTTATTTAGTTCTTTCCAATCTGTATCTTCAAATTTTATATCTAACTGGCCGCTGATGTTGATTATGTTATGGCTGATTTGTATTGTTAGAGACCAACTGTGGAAGTGACCGGTCATAAGGCCCATGGTGCTGTTCCAGCTCCTGGATCTGTCGTCATTGCTCGAGTAAGTTGCTTACAGCCTATTTTATCTGTTTGTGTGTGATATTTAAAATGTCACCGATCTTTCACTCTAGCGCCTGCTGATGTAGGGCCTAATTGTAGGCTATGGCTTGCTTCCTTCCTTTTTTCCATTTCCTCATCCTCCTCTTTTAATTTTGCTAAGGTAATCCTGTTGGCGAAAGTAATTTTGCATCTTTGATATGCTAAGCCCTTCCTTAGTCAAGTCATAAGTCATAGGTACAAAAGGAATTTGATGTAGGGTTGGTTTTTGGAATTCTTTTCCTATTGTTTACCGTAGTCTACTACTGCTTCTTAAGGTTGCTCGTTTCGGTTAGTGTGGTTTTTAGATTGAAGTTAATTGGAGGTAGTTAGACCTGAGTTGGGAGGGCTCTATGGCCTTGAAAGTTTTGTTTCTTGCAACCTCCCCACTCCACACAAATAAAGAACTCTACTGAATTTTATTTACTATGATTTTTCTTTGACTCTTAAGTTATTTCTAGTATTTTTTTTTTCACCCTCTTGGTATCTGTTTTGGTTGATGATTGGATTATCATTCTATGAATGTCTTAACCAGTATATCTTATTATTCTTTCCATTAATTGTAGGTTACAAATGTAATGTCCAGAATGGCATCAGCTGATATTATGTGTGTTGGTCCAAAGTCTGTGAAGGAAAAGTTCACCGGAATTATCAGGTCTGAAATATTTTTTTATGTAAAGCTTTTAATTATCCTTTTTTTTTTGTATATATTATTTTCTTTGGTGTTAAAAGGTCTTCTACCATGTTCTGATTTTTGATATATTTTGCATTTTCTTGAAAACTTTTATGCTGTCTTTATTATTTATGTTGCATGGAAATCAAACATTTAAAGCTGATCTAAATTAGGAAAAAAGTTATTTAAATTTCGTGTAAAAAAAATGTAAATTAGGACAGCAGTTATTTAAATTTTGTGTAAACAAAAGTTAAATTATGACAAAAATTATGTTGATGTAAACATTGTTTAGTAAACCTAAATAATATGCATCTGTTTTGCTCCTAGACTAGGTCAGGGACCTCACCTTGATGAGCATGCGCTTCTTGCTCAAGTGCAACATTTATTTTAGTAAAGTATGATCAAATTATGTTCAAGAAATCATAAACAAGAACATATTGGTTCATTTCATTCATTTGACCTCTCTTAAAGCACAAGTTCTCTTTTTCCCGTAGGTGTGGAGGAAGATGGAAGTAATAGTGAACTAAATAGGAAAATATGGAGGGCTATAAGTCAATTGATCGGAACCATGGAGATGAAAACTTATTTAGTTATGATGGTCGATGGACCTTAAGAATTAGGTCTTTCCAATGTGATTTTGTAGTTGATTTTAGGAATTTGTGGACTTTTTGCAGTTTTACTTTATTCATCTTTAATAGTTGATCCTTCGAGCATTGTCTAATGTTTCTGTAGTAGCTCTGACTTTTCTCCTTTGCCTCCCATCATAAGCAGCGAACAACTTGCAATTTTTGAACACAGTTGCCTAAAGCCCTGCATTACCCGAAATCTTTTCTTCTAAAGGATATTGTTAAGGAAAGTTCAATGTTCTTGATCATAGATGTTTTCAAAGTCAGTCTTGAAGGTAATGCATGTGTTACAAGTTCTGAAACCATCGTATCGGGATTAGCAACCACAGCTCCATCAGCTCCTTTCCTACATTTAGCGAACAACCCTAGGCCTATAGTTATTGATTTTACAAACATCACCCTTCCTGCACACAAGGAAGCCTTAGATTTCATTTGAACATATCACATATCAATTACCTCTCTCTTGGTTCAACCTTCGGATGAACTTAATACAAAAATCATTAGATGTCTTCCGGCTCCGGGCCTTGAGCGGGTGTGGGTGCCCTCAGGTATAGCGTAGCAAAAAAAAAAAAAAAAAGTACCTCCCTCTTGAGTCTTGTAAAAATCTTGATCTTTTGTTTAAAAAATTATTGCCTCCTTGATATCCTGCCCTGGAGGTGATAGACCACCTCAATTATTAATGTGTATAGTATGAAATGTGTTGGGGGACTTTCTCTGTGCAAGTCATGTGATGTACCTGTGGGGCCCATTGTTATTAAGTTAGTTGTGAATTGTGATTAGGAGAGCACATCTAGAGAGTATTATAGGAAACTTTCATATAGGTGAGAGGTACGTTTCTGGCTGTTGTAAGTTTGAAGTAGGTAGGGAGACAGAGACTCTTGAAATTTCCATAAGGTTGTACTTTCTAAAACTCTTTGAATTTAGTGGATTCTGTCAAAAGTGGTATTTTGGAATGATAGCTAATAAAAAGGTGGAATCAAGACTTAATGTATTGGAAGAGAAGAATGAGGAGTTGGGGTAGATTAAAAAAGAATTCCACCTATACTTGGTGGTAAAGAAGTTGGAAAATATTTGGCATGGAGAAGAGGGATTGATTACAATAGAAACAGCTAAGGTGGAGCGTGGGAAGAGTAAAAGGAGTGGTCTTCATCAGGGTAGTTAGAGAAAAGATAGTGGAGATATGTAGAGTGGAGAAAATTGAGTGATATCAATATGTGTTTGAGAAAACTAGAGATCCTCATCTTTAATGGTTTAATGGTAAGAATTTAGATAGGTAGCTGCATAGAGTGGAACAATACTTTGTAGTGAATCACGTAATGAGGGCTGAGAATTTGGAAGTTGTTGTGTTATGTTTAAATGGAGAACCTCTCTTGGCATCAATGCACAAATGGCCAAAGATTGATAGAGAGCCTGGAGGAGTTTTGTTGCTTGTTCTTTAAAAGATTTTGGACCACCTAAGAAGGGACATTATGTGAGAAATTCTTAGCACTGGGTCAGGCCACCACTGTTGAAGAACATTATTATAAGTTCAAACAGTATATAGCACCATTACTAAAGATACTGGAATTAGTCTTGGAAAGTCCATTTGTCACAGGTTGAAACAAGTGAAAGTTTTTTTTTTTTTTTTTTCCTTTTCTTTTTTCATGGGAAACAATATTTCATTGATAAGATGAAATATATAAAAAGGGAAGATACCGTGTAGGAAAATTACAAAAGAGCCTCCAATTCATCAAAAGATCATTTAAACTAAAACTTGAGGAAAGAGGCAAAATAAGATCTCCAGTAACTCATCACGCATCCTATCACTCAAAACTTTTCTTTGTAGTCAATTCTATACTAAGGATTTGGGAGTGTTGAAATACTTCTTAGGAATTGAAGTAACGAGGAGCAAGAAGGAGATTCTATTATCACAGAGAAAATATGTACTTGACCTGTTAACTGAAACAAGAAAGTTAGCTACCAAGCCACGTAGTACCCCAACAAAAGCTGATTTACAACTTACAGAGGGAGGGGAGTTGTTGAAAGATCCTGAGAAGTATTAGAGGTTAGTAGGGAAGCTGAATTATCTCACAGTTACGAGGCCAGACATAGCTTATCCAGTCAGTATTATGAGTCAGTTTATGAGTTCTCCTTCGACTGACCATTGGGCCGCATTGGAACATATTCTATGTTATTTGAAAGGTGCTCCTGGACGTTGTTTGTTATATAAAGGTCATGGTCATCTTAATATTGAATGTTTTTTAGATTCTGATTGGACAGATTCTAAGGAAAATAGAAGATCAACCTCAGGATATTATGTATTTGTTGGATGTAATTTAGTTTCTTGGAAAAGTAAGAAACAAAATGTGGTGTTGCGTTCAAGTGCTGAATCAGAATATCGAACTATGACACAGTCGGTATGTGAATTTATATGGATATATCAGCTTTTGACTGAATTGGGATTTGGCATCACCACTCCAATGAAACTTTGGTGTGATAATCAAGCAGCTCTTCATATTGCATCTAATCTAGTATTTCATGAACGAACCAAACACATTGAAGTTGATTGTCATTATGTACGTAAGAATGTACAGCAAGGATTGGTGGCTACAGGATATGTGAAGGCTGGAGAGTAGTTAAGAGATATCTTCACTGAAGCATTGAATGAAGCACATATAGATTATCTCTCTAACAAGTTGAGCATGATTAACATATATGCACCAACTTAAGGGGGAGTGTTACAGTATATATATTAGTATATTTTATACTCTTGTAATATATGTATTAATTAGTCCTTTACCTTTCCTTTCTAGGATTAGATTAACCTTGTATATTTGTCTATATATATATAGACTTGAGAATAATCTTATCTGGTTCTCTCAAACCTTAGTTTCTATGTGGACCACAAACATTAGAATGAACTAATTCAAAAAGTGCATTAGCTCGTGTATTGACTCTAGGATACGCAGACTTATGGAATTGATTATTTTGATACTTTTTCTCCAGTTGCTAAATTGGCTTCTGTCAGGTTATTTATTCTCTTGGCATCCATTCACCATTGGCCCTTACATCAGCTTGATATTAAAAATGTCTTCCTTCATGGTGATCTTCAAGAAGAAGTGTATATGGAGCAACCACCAGGTTTTGTTGCTCAGGGGGAGAATGGAAAGATATGTCGTCTTCGCAAATCCTTATATAGGTTGAAACAAAGTCCACGAGCATGGTTTGGAAAATTCAGTCAGGTGATTGAGGACTTTGGAATGAAGAAGAGTAAGTCCGACCATTTTGTCTTCTATAAACAATTTGAGTTGGTGTTATCTTACTAGTTGTATATGTTGATGATATTGTGATTACTGGTAATGATTCATCAATCCTCGTGTGTTGATACTTCGTCTCAAAATGGAGTTGCAGAAAGAAAAAATTGACATCTTCTCCAAACAGTAAGGGTCTTAATGTTTCAAATGCATGTTCCAAAATACTTTTGGGCTGATGCTATTTCGACGGCTTGCTTCTTGATTAATTGCATGCCTTCATCCATTCTTAAGGGTGAAATACCTTATCGTATTCTATGTCCTAGTTCTACATAACCTTTATCTCCTATTAAACCTAAAATATTTTGTTGCACCTGTTTTGTTCGGGATGTTCGCTCTAGCTCACCAAATTTGACCCTAAGTCATTAAAATGCATTTTCCTTGGTTATTCTCGTGTTCAAAAAGGGTATCGATGTTATTGTCCTGATCTCAATAGATATCTTGTCTCTCCTGATGTTACATTCTTTGAAGATACTCCTTTTTCATCATCCTTGAGTACCAGTCAGGGGGAGCATTCACAGGAAGATATGACTTTCTTGTCTATTCCTTTTTCTATACTTCTACTGACATGCCCCCTATTTCTGTGTCTGATCCTTCTCTTCCACCTATTACTCAAGTTTATTCTCGATGGCAACCTCCTTTAGTCTCATGCCCTATACTAGCATCTTCTTCGTCTGTGGATCCAGGAACGAGTGACGATCTTTCTATTGTTCTTCGAAAAGGTAAGCGTAAGTGTACTTACCCTGTTTCTTCTTTTGTTTCATATAACCATTTGTCCTCACCTACTTGTTCATTTATTGCATCCCTTAAGTCTGTATCTGTTCTTAAAACTGTTCACGAAGCTTTATCTCATCCTGGTTGGCAGGCTGCTATGTTGGAGGAGATGACTACCTTAGATGACAATAATACTTGGGATTTAGTATCTTTTTTTGCAAGAAATAAACCTATCAGTTGTAAATGGGTGTTTTCTATCAAAGTTCATCTTGATGGGTCAATTGTCCGTTTGAAAGCTGGTCTTGTTGCTAAAGGATATGCGCAGACTTGTGGAATTGTGGACGGAGACTCTTTAGCACGGAGAGAGATGGATGACCCAAACGACAATGTTCTTCGAAAGGAGTTGGCACTCGAGTGCAAACGGTGGTTGTAGGTATTTGTGTATCAAATGTGTAGAGGCCATTGGATTCACACCCTTTACCAATAGTCTTTTTCGTTGTTAGATCCTCAAAAAAGCAATAACCAGGAAAGAATAAGACACAACAATTGAGATCACGAGTAAGTTTACTGATAGAGATCGAATTAAAGGAAAATTGTGGCAAATTTAAAACAGAGATCAATGAAAGAGTTTTGGAAAGATGAACGGTGCCAAAGCGAAGAACAGGAGAAGTGGTGCCATTTGCTATGGTAACATTAGGTTAAAGATGTGGATGGTGAAAAGGTAGCAAATAAATTGGGGTTACCTGACATATGATTTGTAGCACCAGAGTTAATGACCCATTTTGACGCGGAGGAAATAAGATAAGACATTTATTGGTATTACCTGACTCAGCGATGACAGTAATTTGATTAGAGGATGATGCCATCAATGACTCTTGATATTGTTGGAATTTAGCAAACTCTTTCGCAGAAATTGAGTATGTAGAGATTGATTTCTTCTTAGCCATATCAAATGACAACTGATTCGAACTAAACAACAAAACAAGGCCAAAACAGAGTAATTGAACCGGCTGAACCGAGCCGATTGAACCGAACCGGTTAAATCGAGCCAAATGAACCGAACCGATTGAACCGAGCCAAATGAACAGAATCAGTTGAACCAAGCCAAATGAACCGAATCGATTGAACCGAGCCAATTGAACCGAACCGTATGAACCAGGCCGAACCGACCCAAGCAAGTGTTTCACCCTACACAACACACACGGTGGCTGACAAAGACACCACGGTGCTTAACTGCAACGACTAGCGGCAGTGGAGGCAGGTGACGGCGGCGGCGGCGGGTGAGGATACTAATGAACACTTGCAAGAAAGTGTTCCAAACTTCAAACCCTACAAAACCCTAATGGGCACAAAATCCTAATGTTAAAAAATTTAGAGAAAACCTAGAGTTCTCATACCATGTAGAAACTAAGGTTTGAGAGAACCAGATAAGATTATTCTCAAGTCTATATATATAGGCAAATATACAAGGTTGACCTAATCCTAGAAAGGGAAGGTAAAGGACTAATTAATACATATATTACAAGAGTATAAAATATATTAATATATATACTCTAACAAAGTCAAAACCAAAACCCTATTGCAGATGACATTGAACAACTGGAATTTGTCATTGAATATTTTGTTGTTTCTTTCCCTCCAAAGACTCCAAATGAAGGCTCAAATGAGGAAACAAGTGAAAGTTAAGTGTATTTGAACCCAATGGGCTTCTAAAGGTGGAAATGGCAAAGCAAGTTGAGGATAAGAATCAGATCCTAATAGCAAAGCTTGTAGTGCCCCTCATTCCAAACACCAGACCTGTGAGTTATGTTGTAGGTCCATTACCATCACCATGAATCTGACCTGATCTACTACTACTCAAGGTGAGATAGTAAACGGGTAACAAACACCACGTTTCCAAATCTACTACTACTCAAGATGTGATAAGTAAAGGGGGTAACAAACACCATGTTGCTAGATAAGAAGCTCAAAGAGAGTTAATCAGTTGGGAGAATGCGTCTATGAAGGATGCCATGTGGGAGACGGCCTCTTGTAATTGCTTCTCAATTTTCAGATTTCCACCTTAAGGACAAGGTGGCTTTTTGGGGACAGGTAGTGGTAGACCCTAAATTACTAGAGTATACGAGCATAAGCGTACAAGAAGGAAAGAGTCCGTGTGAGATAGAATTTTGCGTGTAGTGGTAGTGGGCCCATGGGAATTTTGTTAGTTACATGTGCCCAAGTGGTTAGGAGAATATAGGGAACGTTAGTGGGAACGAGGGAATTATCTTATGGGAAACATTTTACTTGTGTGGTTCTCCGTAGAGAATTGGGAGAGAAGGGGAGCTCTCTAATCTCCCTTTTGTTGATAAATAAAATTGGGGCTAGGCCTATCAGTTAGTAAGTGTGAATCTATGATTGAGTCATGCATTAATGCTTTCTCTAGTCTAAAGCTGTTGGTTAGAAAAAGGATAGGAGTTAATGTTTTTGCATGGATTGTAGGGCATTGAATAGGATAATGATGCCCGATAGACATTCAATTCTAGTGGTGGATGAGCTTTTGGATAAATTATTTGGTGTGACAAATATTGCAAATTGATCTAGAGTCTAGGTACCATCAAATTTATGTACAGGATGATACTCATAATATCATTTCCTGAACATAATGAGGGATGCTATAAGTTCCTTGCAATGCCATTTGGATTGCAAGGTTCCAGTTGTTATTGAATAATGCTCTGGATCCATTTGTTCTCAAGTTTTTCTCTTATTTTCTTTGACGATACCTTTTAGTTACTATGTTGAGGGCCTTTGGAGAGTGATCACGAGTTAATTAGGGAAGCCATTAAAATTGCAATGTTCCAGTTGTTAATGCATGATGTTATGTGTCCATTCCCTATTAAGTTCGCTCTGGCGATATCTTAATCTACTGTTCCTCAAGTGAAGAACATGTTGAGCATTAGCTACTATTATGAGGGCCTTTTTGATAACAAGAGGTAGTTGTGAATGCCAATAAATTTCAACACTATTTCCTAGGATTGTATTCTCAATTGGTTAGAGCACTGCTTTGCCTAGGCGGAAGTTCGCTCTTAAGCAAATTGAATCATTTGGGTACATTATGTCTGAGGAAGGAGTGGCAGTAGATCATTCCTAGAAATAGTAAGAACTAAGGAGCCACGTGGGTTCAGGCTATTATAGGAGGTTTGTAGCCAATTATGAGTCAGCTTTCTTTTTCTATTCAAGCAACAACTTGATAGAACCCGAAATATATTGAAAGATAAAAGATAAACGAACTACAATAGCTACCAAGTATTAGAGGTACTTAGACCCTCCCCTCTTGAGATATCACTCAAGCCAAAACCATACTCACTCATTGGATACCTTCATCCTTACATCTCCATTCTATTTATAACAGCACTCCCTAACAACTTCCCTATCTAATTACTAAGCTACCCTCGATACTCTAATAATATCCCTTTATTACCCTATGGGCGATTCCTATCACAACTAATCAAAGATACATGTTTAAGATTTTATTGAAGGCTTGCCTAAATTAGAAATGTATGACTCGATCTCGGTGGTGGTGGTTAGTTTGCTTAAATATGGAATTTCATTCCTATGCAACATCCTTTCACAGCCCTAATTTGGTTATGATTCTTCTTCTGCTATAACTATGACTAACAGTAACAACTTTTAGGAAAAGATGGAAGATACATGTTAAGGAAATCATTCATATTAAATGGTTTTCAGAGTCGTAAAATTTGCTTATAATGATGGAAGTGGCGAACAGATAGTTTCTTCGAATGTTTTTGGTTTTGTTTTTTCATCGTGTGACAAGGCTGTAACTAGTTAGATTGAATCGAAGTCCTAACTTATCAAAAGGAGGTAGACCATGCATATCCAACCCACTTTTGTGCCCTTGTTTCTGTCTGTCATTGGTATAAATGAATGTTATATAATCTCTCGTATATTTGAAATGCCTTTTAATCTACTATGTTTTGGGAGATATTTTACATTGGAAGATCATTCATGCTTTCTGTAGGCAACAAGACGTCCGAGCAACTGAGATAGATAAAGTAGATATGCATTTGTCGTTTCGTCCGGGTGACATCGTCAAAGCTCTTGTTGTATCCTTTCTGCCTCATTTCCTCTTGCATGTCCATAAAGGATGCAAAAGGCCTAGTAGATTTTTAGTGCGCAATTCTTCTTCACTGGTCATAATCTATCAGCTGTTTGTCAAATTATAACAACGCTCGAGTATATGTTTAGTCCTTAATGTTTGAGTGTACAACCTATCCTAATGGCAATCCTTTTAGTACCATGACATGCTGATAAGCTTATAATGGATCAATTTTAATATTCACCGACGAAAAGGGTATAATTGTGAAAAATATTAAAATATAAAGGATTAAGTTGAAACTTTTTAAATAATAGGGACCCAATTGAAAAAGCAATCTAACGTTAGGAACTAAAACATTTACTTTTCATCTTACAATAATTATTCCTACGTGTGTCGTAGTTGGCTAAAAATAGAAAATCTTATAGGAAATAAGAACTAGCAAATAACAAAGTCTGTTTGCTGGATCATAGACAATTATTTTCCATCTTTCTGCTGTTGGGTCTTATTTTCATTTCTCACGTCAAAAAGTTCTTGGAGATTTTAAATTGATTGTTTTTATTACCACAAACTTTCTTGACAAAAGTTCTCTCTAAAAGCTTTCTCTTGGAGATGCAAGGGCTTATCATCTATCAACTGCAAAAAACGAACTTGGTGTCGTCTCTGCAGAAAGTACAGCAGGTAAAGAGTATTGGTAATATTGTGAAAGCCTAAAGAGCAGTTGTTTCCTTTTATAACATTTAAAGACGTCAATATTGTTGTATGAAATATACTGAGGGTTTTTTTCTCTTCATTTTTTTCTTTGTAATTTTATCCTTCAATTGTGTAGGGTAGCTAATTGATTGTTAAGCGGAGTTTGGTTTGGTCATGAAAGATCTTGACATTTTGTCTTACTATATTCTCCCTCTGTTTTCTGTAATCACAGAGGTTAAACTGGATCTTAAGTTAATAACAGTGAAGGGAGAAATAGTTGTACTAGTGTAATGTAATGTCTAGATGGTTGAAATTTAATACCACATTAAAACTAAATTTGAAATTTATTTAAAACACACGAGATTCAACCAGCATAACCCTTAAAATCAAGTAAAAAAAGCCTAAATTGTGCCATGAAAATATTCAATCCTAGCCATGAGATGATAAAAAAAAGTCCTAAACTCAACCATAAAATATTGAAATCCAGCCAAAAGGTGTTTAACATGACCAAGAACCAGTACCTGTCCAACCACCAAAATGCTCACAGTAAGCCACAAATATTCAAAAGAAATTTGAAACTTAATTAATTGAGGGTGTTAATTTCACTATTTATTCAAGTTCAGGGTTTACTGTTTAATTGTTGAGATTAACTCTTGAACCCAGTATCGGATTGAAAAATTGAAAAAAATTCATCTTTTATCTTTGTACTTGGGAAAGTAAATTAATTTCAATCTTAAAGTTCTAGCTTCATTAAATTGGATCTTGCATTTGGTAGGAAAATTAATATCTATCTCAAAACCAAGTGAAAAAAATGCTTAAAGTACATTGGACAAGTCACCTAAAGTTCAGCCCGCAAAACAGACAAAATAAGTTGCAAAAATAGCTAAAACCAGCCACATAATGCACCTAAATCTAGCTACAAAATCAAGCACTACAAGGATGTCAAATACCCACATTAAACACCCAAACTAAACTTAAAAAATATCCAATATAGAAGTTACTAGACTAATCTTGTCCAACTATTAGAACATATGAATGTGGCCATAGATGTTTAAAAAAAAAAAGTGTCACATTTACTTAAAGGTTTAATTTGATAAAATCAAGTGTAGGAACAAAATGTGAATTCTTTCTGGTATTTTAATTAGTTTACTTCCGAATGATTATTGTAATTATCAATTAGGTGTTATTCTTTTGGATTGAACCCCTTATTATAGGCCGGTCTTCTTTTGTCACACTTATTTTTTGTATGCTCTTTGTATATCTTTCATTTTATCTCAATGAAAGTTTAGTTTCATATAAAAAATAAATAAATAAATAAATAAAAGTTTACTTTGGAAGTTCTGTTACCTGATTATGAATGATGAATGTTGATGTCTATAAAGCTGCCCCTCTGACTCAAAGTGCCAATTTTGTTAACAACTAATTGCCTGTTCGATAATCCTTTTGTTTTTATTTTTCTGTTTACAAAATATGTTTGTTTTGCACAGTTTCATTGGTAAATTTTTCACTTCTCGAAAACATATTTGAATGTTATTTTAGGTGCAGTAATGGTTCCCATAAGTTGGACAGAAATGCAGTGTCCACTAACAGGCCAAATTCAGCAAAGAAAAGTTGCCAAAGTTGGAGGAGGATGA

mRNA sequence

ATGAAAGAGGCCGAGGAGACGCAGTTCGTGACTCCCGGAGAAGTGCTCGGAAAGCCTTCGGACTTGAAATCTGGGAAAGGAGCTTATGTTGCCAATAACACTGTTTATGCTTCTCTTTCTGGTTTCCGCCGCATTCTTCCTCCTCCACCCAACTCTTCCGACTCGAGACCAACTGTGGAAGTGACCGGTCATAAGGCCCATGGTGCTGTTCCAGCTCCTGGATCTGTCGTCATTGCTCGAGTTACAAATGTAATGTCCAGAATGGCATCAGCTGATATTATGTGTGTTGGTCCAAAGTCTGTGAAGGAAAAGTTCACCGGAATTATCAGGCAACAAGACGTCCGAGCAACTGAGATAGATAAAGTAGATATGCATTTGTCGTTTCGTCCGGGTGACATCGTCAAAGCTCTTGTTCTTTCTCTTGGAGATGCAAGGGCTTATCATCTATCAACTGCAAAAAACGAACTTGGTGTCGTCTCTGCAGAAAGTACAGCAGGTGCAGTAATGGTTCCCATAAGTTGGACAGAAATGCAGTGTCCACTAACAGGCCAAATTCAGCAAAGAAAAGTTGCCAAAGTTGGAGGAGGATGA

Coding sequence (CDS)

ATGAAAGAGGCCGAGGAGACGCAGTTCGTGACTCCCGGAGAAGTGCTCGGAAAGCCTTCGGACTTGAAATCTGGGAAAGGAGCTTATGTTGCCAATAACACTGTTTATGCTTCTCTTTCTGGTTTCCGCCGCATTCTTCCTCCTCCACCCAACTCTTCCGACTCGAGACCAACTGTGGAAGTGACCGGTCATAAGGCCCATGGTGCTGTTCCAGCTCCTGGATCTGTCGTCATTGCTCGAGTTACAAATGTAATGTCCAGAATGGCATCAGCTGATATTATGTGTGTTGGTCCAAAGTCTGTGAAGGAAAAGTTCACCGGAATTATCAGGCAACAAGACGTCCGAGCAACTGAGATAGATAAAGTAGATATGCATTTGTCGTTTCGTCCGGGTGACATCGTCAAAGCTCTTGTTCTTTCTCTTGGAGATGCAAGGGCTTATCATCTATCAACTGCAAAAAACGAACTTGGTGTCGTCTCTGCAGAAAGTACAGCAGGTGCAGTAATGGTTCCCATAAGTTGGACAGAAATGCAGTGTCCACTAACAGGCCAAATTCAGCAAAGAAAAGTTGCCAAAGTTGGAGGAGGATGA

Protein sequence

MKEAEETQFVTPGEVLGKPSDLKSGKGAYVANNTVYASLSGFRRILPPPPNSSDSRPTVEVTGHKAHGAVPAPGSVVIARVTNVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQCPLTGQIQQRKVAKVGGG
Homology
[Close]
BLAST of Moc06g19540 vs. NCBI nr
Match: XP_022151677.1 (exosome complex component CSL4 [Momordica charantia])

HSP 1 Score: 385.6 bits (989), Expect = 2.6e-103
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0 

Query: 1   MKEAEETQFVTPGEVLGKPSDLKSGKGAYVANNTVYASLSGFRRILPPPPNSSDSRPTVE 60
           MKEAEETQFVTPGEVLGKPSDLKSGKGAYVANNTVYASLSGFRRILPPPPNSSDSRPTVE
Sbjct: 1   MKEAEETQFVTPGEVLGKPSDLKSGKGAYVANNTVYASLSGFRRILPPPPNSSDSRPTVE 60

Query: 61  VTGHKAHGAVPAPGSVVIARVTNVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEID 120
           VTGHKAHGAVPAPGSVVIARVTNVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEID
Sbjct: 61  VTGHKAHGAVPAPGSVVIARVTNVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEID 120

Query: 121 KVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQCP 180
           KVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQCP
Sbjct: 121 KVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQCP 180

Query: 181 LTGQIQQRKVAKVGGG 197
           LTGQIQQRKVAKVGGG
Sbjct: 181 LTGQIQQRKVAKVGGG 196

[Close]
BLAST of Moc06g19540 vs. NCBI nr
Match: KAG7020862.1 (Exosome complex component CSL4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 353.6 bits (906), Expect = 1.1e-93
Identity = 181/196 (92.35%), Postives = 188/196 (95.92%), Query Frame = 0 

Query: 1   MKEA-EETQFVTPGEVLGKPSDLKSGKGAYVANNTVYASLSGFRRILPPPPNSSDSRPTV 60
           MKE  EET+FVTPGEVLGK SD+K GKGAYVANNTVYASLSGFRRI+ PP +SSDSRPTV
Sbjct: 1   MKEGEEETEFVTPGEVLGKFSDMKPGKGAYVANNTVYASLSGFRRIISPPTDSSDSRPTV 60

Query: 61  EVTGHKAHGAVPAPGSVVIARVTNVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEI 120
           EVTGHKAHGAVPAPGS+VIARVT VM RMASADIMCVGPKSVKEKF+G+IRQQDVRATEI
Sbjct: 61  EVTGHKAHGAVPAPGSIVIARVTKVMPRMASADIMCVGPKSVKEKFSGVIRQQDVRATEI 120

Query: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 180
           DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC
Sbjct: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 180

Query: 181 PLTGQIQQRKVAKVGG 196
           PLTGQIQQRKVAKVGG
Sbjct: 181 PLTGQIQQRKVAKVGG 196

[Close]
BLAST of Moc06g19540 vs. NCBI nr
Match: XP_023530831.1 (exosome complex component CSL4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 353.6 bits (906), Expect = 1.1e-93
Identity = 181/196 (92.35%), Postives = 188/196 (95.92%), Query Frame = 0 

Query: 1   MKEA-EETQFVTPGEVLGKPSDLKSGKGAYVANNTVYASLSGFRRILPPPPNSSDSRPTV 60
           MKE  EET+FVTPGEVLGK SD+K GKGAYVANNTVYASLSGFRRI+ PP +SSDSRPTV
Sbjct: 3   MKEGEEETEFVTPGEVLGKFSDMKPGKGAYVANNTVYASLSGFRRIISPPTDSSDSRPTV 62

Query: 61  EVTGHKAHGAVPAPGSVVIARVTNVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEI 120
           EVTGHKAHGAVPAPGS+VIARVT VM RMASADIMCVGPKSVKEKF+G+IRQQDVRATEI
Sbjct: 63  EVTGHKAHGAVPAPGSIVIARVTKVMPRMASADIMCVGPKSVKEKFSGVIRQQDVRATEI 122

Query: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 180
           DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC
Sbjct: 123 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 182

Query: 181 PLTGQIQQRKVAKVGG 196
           PLTGQIQQRKVAKVGG
Sbjct: 183 PLTGQIQQRKVAKVGG 198

[Close]
BLAST of Moc06g19540 vs. NCBI nr
Match: XP_022974279.1 (exosome complex component CSL4 [Cucurbita maxima])

HSP 1 Score: 352.4 bits (903), Expect = 2.4e-93
Identity = 178/191 (93.19%), Postives = 185/191 (96.86%), Query Frame = 0 

Query: 5   EETQFVTPGEVLGKPSDLKSGKGAYVANNTVYASLSGFRRILPPPPNSSDSRPTVEVTGH 64
           EET+FVTPGEVLGK SD+K GKGAYVANNTVYASLSGFRRI+ PP +SSDSRPTVEVTGH
Sbjct: 10  EETEFVTPGEVLGKFSDMKPGKGAYVANNTVYASLSGFRRIISPPTDSSDSRPTVEVTGH 69

Query: 65  KAHGAVPAPGSVVIARVTNVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEIDKVDM 124
           KAHGAVPAPGS+VIARVT VM RMASADIMCVGPKSVKEKF+G+IRQQDVRATEIDKVDM
Sbjct: 70  KAHGAVPAPGSIVIARVTKVMPRMASADIMCVGPKSVKEKFSGVIRQQDVRATEIDKVDM 129

Query: 125 HLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQCPLTGQ 184
           HLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQCPLTGQ
Sbjct: 130 HLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQCPLTGQ 189

Query: 185 IQQRKVAKVGG 196
           IQQRKVAKVGG
Sbjct: 190 IQQRKVAKVGG 200

[Close]
BLAST of Moc06g19540 vs. NCBI nr
Match: XP_022934020.1 (exosome complex component CSL4 [Cucurbita moschata])

HSP 1 Score: 351.3 bits (900), Expect = 5.4e-93
Identity = 179/196 (91.33%), Postives = 187/196 (95.41%), Query Frame = 0 

Query: 1   MKEA-EETQFVTPGEVLGKPSDLKSGKGAYVANNTVYASLSGFRRILPPPPNSSDSRPTV 60
           MKE  EET+FVTPGEVLGK SD+K GKGAYVANNTVYASLSGFRRI+ PP +SSDSRPTV
Sbjct: 1   MKEGEEETEFVTPGEVLGKFSDMKPGKGAYVANNTVYASLSGFRRIISPPTDSSDSRPTV 60

Query: 61  EVTGHKAHGAVPAPGSVVIARVTNVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEI 120
           EVTGHKAHGAVPAPGS+V ARVT VM RMASADIMCVGPKSVKEKF+G+IRQQDVRATEI
Sbjct: 61  EVTGHKAHGAVPAPGSIVTARVTKVMPRMASADIMCVGPKSVKEKFSGVIRQQDVRATEI 120

Query: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 180
           DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVM+PISWTEMQC
Sbjct: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMIPISWTEMQC 180

Query: 181 PLTGQIQQRKVAKVGG 196
           PLTGQIQQRKVAKVGG
Sbjct: 181 PLTGQIQQRKVAKVGG 196

[Close]
BLAST of Moc06g19540 vs. ExPASy Swiss-Prot
Match: Q9Y3B2 (Exosome complex component CSL4 OS=Homo sapiens OX=9606 GN=EXOSC1 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.9e-33
Identity = 83/191 (43.46%), Postives = 116/191 (60.73%), Query Frame = 0 

Query: 4   AEETQFVTPGEVLGKPSDLKSGKGAYVANNTVYASLSGFRRILPPPPNSSDSRPTVEVTG 63
           A   ++  PGE L    +   G G Y  +  +++SL+G         + + + P V V  
Sbjct: 2   APPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLM----KSSENGALPVVSVVR 61

Query: 64  HKAHGAVPAPGSVVIARVTNVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEIDKVD 123
                 +P  G++V  +V+++ SR A   I+ VG   +K  F G IR++DVRATE DKV+
Sbjct: 62  ETESQLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVE 121

Query: 124 MHLSFRPGDIVKALVLSLGDARA-YHLSTAKNELGVVSAESTAGAVMVPISWTEMQCPLT 183
           ++ SFRPGDIV A V+SLGDA++ Y L+TA+NELGVV A S +G  MVPISW EMQCP T
Sbjct: 122 IYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKT 181

Query: 184 GQIQQRKVAKV 194
              + RKVA+V
Sbjct: 182 HTKEFRKVARV 188

[Close]
BLAST of Moc06g19540 vs. ExPASy Swiss-Prot
Match: Q9DAA6 (Exosome complex component CSL4 OS=Mus musculus OX=10090 GN=Exosc1 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 6.6e-33
Identity = 83/191 (43.46%), Postives = 116/191 (60.73%), Query Frame = 0 

Query: 4   AEETQFVTPGEVLGKPSDLKSGKGAYVANNTVYASLSGFRRILPPPPNSSDSRPTVEVTG 63
           A   ++  PGE L    +   G G Y  +  +++SL+G         + + + P V V  
Sbjct: 2   APPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLM----KTSENGAVPVVSVMR 61

Query: 64  HKAHGAVPAPGSVVIARVTNVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEIDKVD 123
                 +P  G+VV  +V+++ SR A   I+ VG   +K  F G IR++D+RATE DKV+
Sbjct: 62  ETESQLLPDVGAVVTCKVSSINSRFAKVHILYVGSTPLKNAFRGTIRKEDIRATEKDKVE 121

Query: 124 MHLSFRPGDIVKALVLSLGDARA-YHLSTAKNELGVVSAESTAGAVMVPISWTEMQCPLT 183
           ++ SFRPGDIV A V+SLGDA++ Y L+TA+NELGVV A S +G  MVPISW EMQCP T
Sbjct: 122 IYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKT 181

Query: 184 GQIQQRKVAKV 194
              + RKVA+V
Sbjct: 182 HTKEFRKVARV 188

[Close]
BLAST of Moc06g19540 vs. ExPASy Swiss-Prot
Match: O59821 (Exosome complex component csl4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=csl4 PE=3 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 1.5e-24
Identity = 72/184 (39.13%), Postives = 110/184 (59.78%), Query Frame = 0 

Query: 10  VTPGEVLGKPSDLKSGKGAYVANNTVYASLSGFRRILPPPPNSSDSRPTVEVTGHKAHGA 69
           V PG+V+ + +   +G+G     + + ++ +G   I  P  NS      VE T       
Sbjct: 4   VLPGQVVARGA--PNGEGTVKRGDYIISTRTG---IFDPEKNSVTYPRKVEET-----AV 63

Query: 70  VPAPGSVVIARVTNVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEIDKVDMHLSFR 129
           +P  GS+V+ARV+ + +R A+ +I  V     K++F G+I  QD+RATE +KV +  SFR
Sbjct: 64  LPNVGSIVLARVSRINARQATVNISVVDDVCTKDEFQGVIHVQDIRATEKNKVKVQNSFR 123

Query: 130 PGDIVKALVLSLGDARAYHLSTAKNELGVVSAEST-AGAVMVPISWTEMQCPLTGQIQQR 189
           PGDIV+ALV+SLGD  +Y L+TA+N+LGV+ A+S+  G  M P+ +  MQ   +G  + R
Sbjct: 124 PGDIVRALVISLGDGSSYFLTTARNDLGVIFAQSSETGEQMFPVDYQHMQTK-SGYTEMR 176

Query: 190 KVAK 193
           K AK
Sbjct: 184 KCAK 176

[Close]
BLAST of Moc06g19540 vs. ExPASy Swiss-Prot
Match: P53859 (Exosome complex component CSL4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CSL4 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-18
Identity = 61/179 (34.08%), Postives = 88/179 (49.16%), Query Frame = 0 

Query: 50  PNSSDSRPTVEVTGHKAHGAVPAPGSVVIARVTNVMSRMASADIMCVGPK---------- 109
           P +   R T +   +     +P  G +V+ RVT +  + A+ +I+ V  K          
Sbjct: 112 PGTEKGRKTNKYANNDFANNLPKEGDIVLTRVTRLSLQRANVEILAVEDKPSPIDSGIGS 171

Query: 110 ------------------------SVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVK 169
                                    + E F GIIR QDVR+T+ D+V +   F+PGDIV+
Sbjct: 172 NGSGIVAAGGGSGAATFSVSQASSDLGETFRGIIRSQDVRSTDRDRVKVIECFKPGDIVR 231

Query: 170 ALVLSLGDARAYHLSTAKNELGVVSAEST--AGAVMVPISWTEMQCPLTGQIQQRKVAK 193
           A VLSLGD   Y+L+TA+N+LGVV A +   AG +M    W  M  P+TG  ++RK AK
Sbjct: 232 AQVLSLGDGTNYYLTTARNDLGVVFARAANGAGGLMYATDWQMMTSPVTGATEKRKCAK 290

[Close]
BLAST of Moc06g19540 vs. ExPASy TrEMBL
Match: A0A6J1DE54 (exosome complex component CSL4 OS=Momordica charantia OX=3673 GN=LOC111019593 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.3e-103
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0 

Query: 1   MKEAEETQFVTPGEVLGKPSDLKSGKGAYVANNTVYASLSGFRRILPPPPNSSDSRPTVE 60
           MKEAEETQFVTPGEVLGKPSDLKSGKGAYVANNTVYASLSGFRRILPPPPNSSDSRPTVE
Sbjct: 1   MKEAEETQFVTPGEVLGKPSDLKSGKGAYVANNTVYASLSGFRRILPPPPNSSDSRPTVE 60

Query: 61  VTGHKAHGAVPAPGSVVIARVTNVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEID 120
           VTGHKAHGAVPAPGSVVIARVTNVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEID
Sbjct: 61  VTGHKAHGAVPAPGSVVIARVTNVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEID 120

Query: 121 KVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQCP 180
           KVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQCP
Sbjct: 121 KVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQCP 180

Query: 181 LTGQIQQRKVAKVGGG 197
           LTGQIQQRKVAKVGGG
Sbjct: 181 LTGQIQQRKVAKVGGG 196

[Close]
BLAST of Moc06g19540 vs. ExPASy TrEMBL
Match: A0A6J1IH52 (exosome complex component CSL4 OS=Cucurbita maxima OX=3661 GN=LOC111472912 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.2e-93
Identity = 178/191 (93.19%), Postives = 185/191 (96.86%), Query Frame = 0 

Query: 5   EETQFVTPGEVLGKPSDLKSGKGAYVANNTVYASLSGFRRILPPPPNSSDSRPTVEVTGH 64
           EET+FVTPGEVLGK SD+K GKGAYVANNTVYASLSGFRRI+ PP +SSDSRPTVEVTGH
Sbjct: 10  EETEFVTPGEVLGKFSDMKPGKGAYVANNTVYASLSGFRRIISPPTDSSDSRPTVEVTGH 69

Query: 65  KAHGAVPAPGSVVIARVTNVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEIDKVDM 124
           KAHGAVPAPGS+VIARVT VM RMASADIMCVGPKSVKEKF+G+IRQQDVRATEIDKVDM
Sbjct: 70  KAHGAVPAPGSIVIARVTKVMPRMASADIMCVGPKSVKEKFSGVIRQQDVRATEIDKVDM 129

Query: 125 HLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQCPLTGQ 184
           HLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQCPLTGQ
Sbjct: 130 HLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQCPLTGQ 189

Query: 185 IQQRKVAKVGG 196
           IQQRKVAKVGG
Sbjct: 190 IQQRKVAKVGG 200

[Close]
BLAST of Moc06g19540 vs. ExPASy TrEMBL
Match: A0A6J1F6G8 (exosome complex component CSL4 OS=Cucurbita moschata OX=3662 GN=LOC111441251 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 2.6e-93
Identity = 179/196 (91.33%), Postives = 187/196 (95.41%), Query Frame = 0 

Query: 1   MKEA-EETQFVTPGEVLGKPSDLKSGKGAYVANNTVYASLSGFRRILPPPPNSSDSRPTV 60
           MKE  EET+FVTPGEVLGK SD+K GKGAYVANNTVYASLSGFRRI+ PP +SSDSRPTV
Sbjct: 1   MKEGEEETEFVTPGEVLGKFSDMKPGKGAYVANNTVYASLSGFRRIISPPTDSSDSRPTV 60

Query: 61  EVTGHKAHGAVPAPGSVVIARVTNVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEI 120
           EVTGHKAHGAVPAPGS+V ARVT VM RMASADIMCVGPKSVKEKF+G+IRQQDVRATEI
Sbjct: 61  EVTGHKAHGAVPAPGSIVTARVTKVMPRMASADIMCVGPKSVKEKFSGVIRQQDVRATEI 120

Query: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 180
           DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVM+PISWTEMQC
Sbjct: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMIPISWTEMQC 180

Query: 181 PLTGQIQQRKVAKVGG 196
           PLTGQIQQRKVAKVGG
Sbjct: 181 PLTGQIQQRKVAKVGG 196

[Close]
BLAST of Moc06g19540 vs. ExPASy TrEMBL
Match: A0A1S3CMV8 (exosome complex component CSL4 OS=Cucumis melo OX=3656 GN=LOC103502755 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.6e-90
Identity = 174/196 (88.78%), Postives = 185/196 (94.39%), Query Frame = 0 

Query: 1   MKEAE-ETQFVTPGEVLGKPSDLKSGKGAYVANNTVYASLSGFRRILPPPPNSSDSRPTV 60
           MKE E ET+FVTPGE+LG  SD K G+GAYVA+NTVYASLSGFRRI+PPP +SSD R TV
Sbjct: 1   MKEGEKETEFVTPGEILGNFSDFKPGRGAYVADNTVYASLSGFRRIIPPPSDSSDLRSTV 60

Query: 61  EVTGHKAHGAVPAPGSVVIARVTNVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEI 120
           EVTGHKAHGAVPAPGS+VIARVT VM++MASADIMCVGPKSVKEKFTGIIRQQDVRATEI
Sbjct: 61  EVTGHKAHGAVPAPGSIVIARVTKVMTKMASADIMCVGPKSVKEKFTGIIRQQDVRATEI 120

Query: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 180
           DKVDMHLSFRPGDIVKALVLSLGDA+AYHLSTAKNELGVVSAESTAGA MVPISWTEMQC
Sbjct: 121 DKVDMHLSFRPGDIVKALVLSLGDAKAYHLSTAKNELGVVSAESTAGAEMVPISWTEMQC 180

Query: 181 PLTGQIQQRKVAKVGG 196
           P+TGQIQQRKVAKVGG
Sbjct: 181 PVTGQIQQRKVAKVGG 196

[Close]
BLAST of Moc06g19540 vs. ExPASy TrEMBL
Match: A0A0A0L935 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G627150 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.1e-88
Identity = 172/196 (87.76%), Postives = 182/196 (92.86%), Query Frame = 0 

Query: 1   MKEAE-ETQFVTPGEVLGKPSDLKSGKGAYVANNTVYASLSGFRRILPPPPNSSDSRPTV 60
           MKE E +T+FVTPGEVLG  SD K G+GAYV +NTVYASLSGFRRI+ PP +SSD R TV
Sbjct: 1   MKEGEKDTEFVTPGEVLGNFSDFKPGRGAYVTDNTVYASLSGFRRIIHPPSDSSDLRSTV 60

Query: 61  EVTGHKAHGAVPAPGSVVIARVTNVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEI 120
           EVTGHKAHGAVPAPGS+VI RVT VM++MASADIMCVGPKSVKEKFTGIIRQQDVRATEI
Sbjct: 61  EVTGHKAHGAVPAPGSIVIVRVTKVMTKMASADIMCVGPKSVKEKFTGIIRQQDVRATEI 120

Query: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 180
           DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGA MVPISWTEMQC
Sbjct: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAEMVPISWTEMQC 180

Query: 181 PLTGQIQQRKVAKVGG 196
           P+TGQIQQRKVAKVGG
Sbjct: 181 PVTGQIQQRKVAKVGG 196

[Close]
BLAST of Moc06g19540 vs. TAIR 10
Match: AT5G38890.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 273.5 bits (698), Expect = 1.3e-73
Identity = 136/188 (72.34%), Postives = 158/188 (84.04%), Query Frame = 0 

Query: 7   TQFVTPGEVLGKPSDLKSGKGAYVANNTVYASLSGFRRILPPPPNSSDSRPTVEVTGHKA 66
           T  VTPG+V+GK ++ K+GKGAYV + T+YASL+G  RI+ P P S D R  VEVTGHKA
Sbjct: 3   TGLVTPGDVIGKATEFKAGKGAYVNDATIYASLTGTCRIVSPLPESIDQRAIVEVTGHKA 62

Query: 67  HGAVPAPGSVVIARVTNVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEIDKVDMHL 126
           HG +P  GSVVIARVT VM++MA+ DI+CVG K+V+E F G+IRQQDVRATEIDKVDMH 
Sbjct: 63  HGPIPETGSVVIARVTKVMTKMAAVDILCVGSKAVRENFAGVIRQQDVRATEIDKVDMHQ 122

Query: 127 SFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQCPLTGQIQ 186
           SF  GDIV+A+VLSLGDARAY+LSTAKNELGVVSAES AG  MVPISWTEMQCPL+GQ +
Sbjct: 123 SFHAGDIVRAMVLSLGDARAYYLSTAKNELGVVSAESAAGETMVPISWTEMQCPLSGQTE 182

Query: 187 QRKVAKVG 195
           QRKVAKVG
Sbjct: 183 QRKVAKVG 190

The following BLAST results are available for this feature:
BLAST of Moc06g19540 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022151677.12.6e-103100.00exosome complex component CSL4 [Momordica charantia][more]
KAG7020862.11.1e-9392.35Exosome complex component CSL4 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023530831.11.1e-9392.35exosome complex component CSL4 [Cucurbita pepo subsp. pepo][more]
XP_022974279.12.4e-9393.19exosome complex component CSL4 [Cucurbita maxima][more]
XP_022934020.15.4e-9391.33exosome complex component CSL4 [Cucurbita moschata][more]
BLAST of Moc06g19540 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9Y3B23.9e-3343.46Exosome complex component CSL4 OS=Homo sapiens OX=9606 GN=EXOSC1 PE=1 SV=1[more]
Q9DAA66.6e-3343.46Exosome complex component CSL4 OS=Mus musculus OX=10090 GN=Exosc1 PE=1 SV=1[more]
O598211.5e-2439.13Exosome complex component csl4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2... [more]
P538591.6e-1834.08Exosome complex component CSL4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /... [more]
BLAST of Moc06g19540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DE541.3e-103100.00exosome complex component CSL4 OS=Momordica charantia OX=3673 GN=LOC111019593 PE... [more]
A0A6J1IH521.2e-9393.19exosome complex component CSL4 OS=Cucurbita maxima OX=3661 GN=LOC111472912 PE=4 ... [more]
A0A6J1F6G82.6e-9391.33exosome complex component CSL4 OS=Cucurbita moschata OX=3662 GN=LOC111441251 PE=... [more]
A0A1S3CMV81.6e-9088.78exosome complex component CSL4 OS=Cucumis melo OX=3656 GN=LOC103502755 PE=4 SV=1[more]
A0A0A0L9351.1e-8887.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G627150 PE=4 SV=1[more]
BLAST of Moc06g19540 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G38890.11.3e-7372.34Nucleic acid-binding, OB-fold-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 64..194
e-value: 2.8E-53
score: 181.2
NoneNo IPR availableGENE3D2.40.50.100coord: 8..61
e-value: 7.6E-8
score: 33.7
NoneNo IPR availableCDDcd05791S1_CSL4coord: 70..159
e-value: 1.69981E-45
score: 143.54
NoneNo IPR availableSUPERFAMILY110324Ribosomal L27 protein-likecoord: 9..44
IPR019495Exosome complex component CSL4, C-terminalPFAMPF10447EXOSC1coord: 100..141
e-value: 2.2E-11
score: 44.3
IPR025721Exosome complex component, N-terminal domainPFAMPF14382ECR1_Ncoord: 9..45
e-value: 7.8E-12
score: 44.8
IPR039771Exosome complex component Csl4PANTHERPTHR126863'-5' EXORIBONUCLEASE CSL4-RELATEDcoord: 1..194
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 70..190

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g19540.1Moc06g19540.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0072488 ammonium transmembrane transport
biological_process GO:0006396 RNA processing
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0000176 nuclear exosome (RNase complex)
cellular_component GO:0000178 exosome (RNase complex)
molecular_function GO:0008519 ammonium transmembrane transporter activity
molecular_function GO:0003723 RNA binding