Moc06g19220 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g19220
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr6: 14966338 .. 14966781 (+)
RNA-Seq ExpressionMoc06g19220
SyntenyMoc06g19220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAATTTAATGCCGAGCTAAAGAAAATAAGATACGAGATTCAAGAACAGGTCATGGAGGTGCAGAATTTAGAGCTAAAGCAGATGAGACAAGACATCGATAAAATTCAGGAGCAAATCACGGAAATTTTCAATGTCTTAAATAATATTGTTATAATTGGGGACATTTCTCAACCTAACAATTTAGTCGAACTTCGTAATAATTCATCACCTAGGGTAGACCCACCTCTTTGTCAATCAACAGATGGATTCCCCCAACATAGTTCGTCATATGACGCTCAGCTTTCTAAGAAAGACCAACAAGCTCCTACAATTTGTCAGGTTGAGTTTGCATTCCAAGATGGTCAAACATCAAAGGCCAATTTAAAAAGTAAAGAAAAAGAAAATGTTACCAACAGAAATGCTGAAGAAACTACAGGGAAAGAATATGCTCAAAGATAG

mRNA sequence

ATGGAAGAATTTAATGCCGAGCTAAAGAAAATAAGATACGAGATTCAAGAACAGGTCATGGAGGTGCAGAATTTAGAGCTAAAGCAGATGAGACAAGACATCGATAAAATTCAGGAGCAAATCACGGAAATTTTCAATGTCTTAAATAATATTGTTATAATTGGGGACATTTCTCAACCTAACAATTTAGTCGAACTTCGTAATAATTCATCACCTAGGGTAGACCCACCTCTTTGTCAATCAACAGATGGATTCCCCCAACATAGTTCGTCATATGACGCTCAGCTTTCTAAGAAAGACCAACAAGCTCCTACAATTTGTCAGGTTGAGTTTGCATTCCAAGATGGTCAAACATCAAAGGCCAATTTAAAAAGTAAAGAAAAAGAAAATGTTACCAACAGAAATGCTGAAGAAACTACAGGGAAAGAATATGCTCAAAGATAG

Coding sequence (CDS)

ATGGAAGAATTTAATGCCGAGCTAAAGAAAATAAGATACGAGATTCAAGAACAGGTCATGGAGGTGCAGAATTTAGAGCTAAAGCAGATGAGACAAGACATCGATAAAATTCAGGAGCAAATCACGGAAATTTTCAATGTCTTAAATAATATTGTTATAATTGGGGACATTTCTCAACCTAACAATTTAGTCGAACTTCGTAATAATTCATCACCTAGGGTAGACCCACCTCTTTGTCAATCAACAGATGGATTCCCCCAACATAGTTCGTCATATGACGCTCAGCTTTCTAAGAAAGACCAACAAGCTCCTACAATTTGTCAGGTTGAGTTTGCATTCCAAGATGGTCAAACATCAAAGGCCAATTTAAAAAGTAAAGAAAAAGAAAATGTTACCAACAGAAATGCTGAAGAAACTACAGGGAAAGAATATGCTCAAAGATAG

Protein sequence

MEEFNAELKKIRYEIQEQVMEVQNLELKQMRQDIDKIQEQITEIFNVLNNIVIIGDISQPNNLVELRNNSSPRVDPPLCQSTDGFPQHSSSYDAQLSKKDQQAPTICQVEFAFQDGQTSKANLKSKEKENVTNRNAEETTGKEYAQR
Homology
[Close]
BLAST of Moc06g19220 vs. NCBI nr
Match: XP_022153553.1 (uncharacterized protein LOC111021029 [Momordica charantia])

HSP 1 Score: 183.7 bits (465), Expect = 1.1e-42
Identity = 101/138 (73.19%), Postives = 112/138 (81.16%), Query Frame = 0 

Query: 1   MEEFNAELKKIRYEIQEQVMEVQNLELKQMRQDIDKIQEQITEIFNVLNNIVIIGDISQP 60
           +EE N ELKKIR EIQEQVMEVQN+ELK+MRQDID IQ+Q+ +I NVL NIV +G  SQP
Sbjct: 20  IEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQKQVMKILNVLKNIVTVGGTSQP 79

Query: 61  NNLVELRNNSSPRVDPPLCQSTDGFPQHSSSYDAQLSKKDQQAPTICQVEFAFQDGQTSK 120
           NNLVE  NNSSPRVDPPLCQS +GFPQHSSS+DAQLSKK QQ PT CQVEF F+D QT K
Sbjct: 80  NNLVEPYNNSSPRVDPPLCQSKEGFPQHSSSHDAQLSKKGQQVPTNCQVEFTFKDEQTPK 139

Query: 121 A----NLKSKEKENVTNR 135
                NLK +EKENVT R
Sbjct: 140 VNYSDNLKGEEKENVTQR 157

[Close]
BLAST of Moc06g19220 vs. NCBI nr
Match: XP_022143515.1 (uncharacterized protein LOC111013388 [Momordica charantia])

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-16
Identity = 55/78 (70.51%), Postives = 61/78 (78.21%), Query Frame = 0 

Query: 1   MEEFNAELKKIRYEIQEQVMEVQNLELKQMRQDIDKIQEQITEIFNVLNNIVIIGDISQP 60
           +EE N ELK+IR EIQE V EV N+ELK+MRQDIDKIQ Q+T I NVL  IV +GDISQP
Sbjct: 65  IEELNXELKEIRDEIQEHVXEVHNVELKKMRQDIDKIQGQVTGILNVLKKIVTVGDISQP 124

Query: 61  NNLVELRNNSSPRVDPPL 79
           NNLVE  NNSS RV P L
Sbjct: 125 NNLVEPHNNSSLRVGPSL 142

[Close]
BLAST of Moc06g19220 vs. ExPASy TrEMBL
Match: A0A6J1DHS7 (uncharacterized protein LOC111021029 OS=Momordica charantia OX=3673 GN=LOC111021029 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 5.5e-43
Identity = 101/138 (73.19%), Postives = 112/138 (81.16%), Query Frame = 0 

Query: 1   MEEFNAELKKIRYEIQEQVMEVQNLELKQMRQDIDKIQEQITEIFNVLNNIVIIGDISQP 60
           +EE N ELKKIR EIQEQVMEVQN+ELK+MRQDID IQ+Q+ +I NVL NIV +G  SQP
Sbjct: 20  IEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQKQVMKILNVLKNIVTVGGTSQP 79

Query: 61  NNLVELRNNSSPRVDPPLCQSTDGFPQHSSSYDAQLSKKDQQAPTICQVEFAFQDGQTSK 120
           NNLVE  NNSSPRVDPPLCQS +GFPQHSSS+DAQLSKK QQ PT CQVEF F+D QT K
Sbjct: 80  NNLVEPYNNSSPRVDPPLCQSKEGFPQHSSSHDAQLSKKGQQVPTNCQVEFTFKDEQTPK 139

Query: 121 A----NLKSKEKENVTNR 135
                NLK +EKENVT R
Sbjct: 140 VNYSDNLKGEEKENVTQR 157

[Close]
BLAST of Moc06g19220 vs. ExPASy TrEMBL
Match: A0A6J1CP05 (uncharacterized protein LOC111013388 OS=Momordica charantia OX=3673 GN=LOC111013388 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 8.8e-17
Identity = 55/78 (70.51%), Postives = 61/78 (78.21%), Query Frame = 0 

Query: 1   MEEFNAELKKIRYEIQEQVMEVQNLELKQMRQDIDKIQEQITEIFNVLNNIVIIGDISQP 60
           +EE N ELK+IR EIQE V EV N+ELK+MRQDIDKIQ Q+T I NVL  IV +GDISQP
Sbjct: 65  IEELNXELKEIRDEIQEHVXEVHNVELKKMRQDIDKIQGQVTGILNVLKKIVTVGDISQP 124

Query: 61  NNLVELRNNSSPRVDPPL 79
           NNLVE  NNSS RV P L
Sbjct: 125 NNLVEPHNNSSLRVGPSL 142

The following BLAST results are available for this feature:
BLAST of Moc06g19220 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022153553.11.1e-4273.19uncharacterized protein LOC111021029 [Momordica charantia][more]
XP_022143515.11.8e-1670.51uncharacterized protein LOC111013388 [Momordica charantia][more]
BLAST of Moc06g19220 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc06g19220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DHS75.5e-4373.19uncharacterized protein LOC111021029 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A6J1CP058.8e-1770.51uncharacterized protein LOC111013388 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
BLAST of Moc06g19220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g19220.1Moc06g19220.1mRNA