Moc06g18860 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g18860
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Locationchr6: 14713441 .. 14717921 (-)
RNA-Seq ExpressionMoc06g18860
SyntenyMoc06g18860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGCGCCAGGCGCCTGGGAAGGCTGCAGAAAACTGGTTTTCTTCCAACTTTGCCCTTCATGAAACGCGTCTTCCCATGCGTTTTGGTGGTTCCAACCGATGCATACGTGTAGAAGAAGTGTTCCACTATCAGTTTGAGCACGATTTGGTCAGTCAAAAGAGTTGGAAATGGGTGATTCACCATCGTTTTAGGACCTACCTAACCAATTCTGCACAGCTATAAATTCCAGCAGCTTCTCCACCAAATTCATCAAGCCTTGCTTCCTTCTCTTGATCATTTTTAGTGTTTCTTTATTGCTTTCTAAGTACTTTTGAGTTGCTTTCATTAGTTGTTTTTGGTTTTTAAATCCCGAGCACTTTACATTCCTTTATTGAGCTTTGTTTTGTTTCCATTTGTACTTAGTTATTTTCTACTTATCCAAATTTATAAAAATCCAGCACTTTGCTTATCTTCCCTTTGCCTTTACTTTATTTTTAGTTAAGAGAGTTGTGTTTTTGGAGGAAAGAGCACGTGACACTCCCCCTTGCTTGAAAGAGAATGGCGAAGCTCTTAATCCCGAGCGAAACTCTCCGTTAGTTAACTTTTGTTTTTCACACATGCATTTCAATTTCAACCACTCTACTTGATGTATTTTCTTCAATATGTCTTTCTAAATTCCCGTCTCTAGCCCGGTTATCAATAGTTAGCCTTTTATTTCTAAAAAGAGTTGCTAAGAAGTAGTGTTTTTGCTTTCCATTCATTGCTCAACATGTTTTCCCAAAAGTTAGGATTTAGAGAAGGCCACTGTAAGTCTTAACAAGTCAATACTGAAAAGGTTGCTTATTTGCATTGTTGAGTGGTTAAACCGAGGAGAGGAGCGCCTTAGACATAAGGGTTCCGCTTAAGTAGCCTAGACATAAGACCTGAACCCGAGGTTGTGACTATTTCCATCCTAAAACTAAGATATCTCTCATAATAGACATATTAGGGAATGTCTTAGGACTTTGAACTTGCTTAGACATAAGTCAAGTGAGAAGCGTAGTCGTTGGTTTCTTAAGTAAAATGCATATTGTCCTAAGCATGTCCTTGATTCTTTGTTGGCTAACTTGAAGTAATTCGGGCTAGGTTTTACCATTATAAGTCCAAATCGCAAATCCAAAACCATTATTTGTGACCACTTCCCATTTTACAAGAATCACTCATTTCAACATTCACTATTCTTTAAAACTTTAGAGTTTGGAAATTATTTAGAAGTCCTTGAGGATCGATACTTGGATACTCCATCCATTTTATATTACTCTGACAGGTGTGCGCTTGCATCTATATAATTGTTACCACGCTTAGTGAGTGCGTTCAGCATAAACCACCAGTCAACCCACATCCGTTCGAAGCCCGATTTAGGCTACCCACACCTTGGCGATCTAGATCTAGGTTACCCACACCTATACGAAGTCGATTTTGTGGTAATGAGTCATTTGAACCCTCTTAGAATTGATTTCGAAGGCTGAATAGTATATGTAACTTGCTGTTTTTTTTCTGTTTTAGTGCCTAGGTGTGAGATCGACGCAAAATTTAGGGGCGCGGTTGTGTGTAAGTAGACAAGGGGCGTGTGCGTGCGTTAATGTGTGCTAGTTGGTCTCTAATGTGCTGTTTTGTGATGTTTAATATTGATTTTGATACGCTTGTGTTAATCTGTATACTTGGTGTAGTGTTGGATATTCGTCGGTGATAATGGTGGAATTTTGCCTTGCTAAACTGCTACGAATTGTTGTGAGATGATGTATATTTACAAAGGATGCACGTTAAAATAGAATTATTGTGATTATGCTTTCTTATGATGTGGGCGTGCTTGTGTGGTTTATATAAATGTTTCTTAATGTTGTGAGCGTGCTGGTCTGAGTCATACTATTTTCTTATGAGATGTGGGTGTAATAGAAGCATATTTTTGGACCCGGCCCGCAGGCTAGGGGTTGATGTGGAGTTGGTTATGATGAGGAACGTTGGATTCTTGGGGAAAATGAATGGGTGACTCTCAGGGCCTCGGGTATAAATGGTCGGGGGCTGATACGTCACTAATTGAGTGTCAAGGCCTCGGGTAAAAATGGTCGAGGGTCGATGCGAGGAGTCTTTTGGAAGGAGAACTATTGGGGCCTTGGGTAAAAATGGTCAAGGGTCGATAGATGGTGAAGTCATCGGGGCCTTGGGTAAAAATGGTCGAGGGCCGATGCAGTAGTGTCGGGGCTCTGGGTAAAAATGGTTAGGGGCCGACTCTACTCGAAAGAGTTAGCTGTGGAAGGCTAGGATGGCTGTGATAAGAGTAGAGGTGTTTGAGATGTTAGGGAGACTCGAGGTTGGTAATTAATTTGTTTATGGCCGTGGTTGTCGCTGAATCTTATAGAGTGTCTATGTTTGATTGCATAATGTGATGAAGAGCATGACTATGAATGTTTCATGATTGTTTGTTGAGCATGATGTTTGTATGTTGTTGGTGAGGGCTACTTACGGAGTATATTTTATATACTCACCCCCCTCTACAATTGTTGTTTCAGGCGGAGGATTCGTTGGCGACCATGGTGATGAAGTGGAGGAGACATAACGAGCAAGGACCATAGGCTGCGTAGTTACTTTTGCTTAGCTTAGGTTTAGATGGTTAAGACCTTATGGTTTGGTCATTAAACTATTTGTTCTTATTTGAATAATTGGGAGGTTCCCACTCGTTGTCTACTTTATTTCGGAACAAGTGTTTATTTTAGTTTTATACCATTCATTGAGTTTGCCTAGTTGGAATAATAAAGTTGCCTCATGAGGTTGTCCACGGATGATGTTTGATTGATATTCTATAGAGTTGATTCATTGGTAAATTGATGAGAGTTGAAGCTTTATGTTATATAATTATTTCACAGGGAGTTGCCATCTCGTGTTTGGTGTTAAGTTTAGACAGGTGGGTAGTTAACGTGACCTAGAAGTGTGTGGGAAGTTCTGGGGCGTTACAATTACATTTGCATGCATTTGGAATGTATTAATGATTGCATGAAGTATTTATCATATTCTTGGGGCACTTTGTAGCATATCTGGATAATTTTTTTTTCTCCTCCAAAGAAAATAAAATAAAAAAAAACTTATCCTGCTCATGCATCATTCTGCATCATTCTGCATGTCCATATCATAAATTAAAAAAAAAATATCTATCTTTTGTATGCATCATTTTACATGTCTATATCATAAATTAAAATTTATCGTTCTAATGCATAATTCATATGTCTAAATATATATATTAAAAAAAAAGGAAGCAGTATTTTCGCAGGCATTGTTTCGCATAATTCCCCTAATTGGTGATCCAACATTTGCATCTCATCGTCTCATGCATATCAATTTCTATCTTAAAAAATCAAAATCTGTGCATTCTCCATTACATCATAATTAACACGAACTCTTAGAAAAATAGCTCAAGAACCACATATTTACTATTCTTTATATACAAGGTACATAAAGCAACATAACATGGAAGAACTTAATGCTGAGCTAAAGAAAATTAGAGACGAAATCCACGACCGGGTCATGGAAGAATTGAATATTGAACTAAAGAAAATAAGAGACGAGATTCAAGAACAAGTCATGGAGGTGCAGAATGTAGAGCTAAAGAAGATGAGACAAGACATCGATAATATTCAAGAGCAAGTCATGGAAATTTTAAATGTCTTAAAGAATATTGTTACAGTTGGGGATACTTCTAACAATTTAGTCGAACCTCGTAATAATTCATCACCTAGGGTCGACCCACCTCTTTGTCAATCAACAGATGGATTCCCCCAAAACAGTTCGTCACATGACACTCAGCTTTCCAAGAAAGGCCAACAAGCTCCTACAATCTGTCAGGTTGAGTTTGCATTCCAAGATGGTCAAACATCAAAGGCTAATTTAAAAGGTAAAGAAAAAGAAAATGCTACCAATAGAAATGCTGAAGAAACTACAGGGAAAGAATATGTTCGATGGGGAAACACAACAGAACAACTGCCAGTACCTTTAATTAATAAAGAGCCGCACCTTGAAACGAATAGAAGCTCTTTTAAAAGGAAAAATAAAGTTCAGGCAGTAGTTTCGAAGCGCAAGGGGAAGTACCAACAAGGATTCGTGGCATACAGTCCTTCTACGGTACCCATAAACTCATTGACTCTGCAGGATGATCCACAAACATTACCTGACAATCATAGTAGTCGGAGACAACTAAAGCGAGAGAGCTTTCATTCGATCCCAATATCCTATACCGAGTTGTTATCCCAATTATTTCAAGGTAATCTATTAGCTCCCATACCCGTAGAGCCATTATAACCACCTTATCCAAAGTGGTACGACCCGCATGTTGGTTGTGATTATCATGCAGGAGCTGTAGGTCATTCAACTGAGAATTGTACCTCACTGAAGCATAAAGTGCAAGTGCTAATGAGGGCAGGATGGCTAAAGTTTTCAAAGGAAGATGGTCAATACATGAAGCACTAG

mRNA sequence

ATGGGAGGCGCCAGGCGCCTGGGAAGGCTGCAGAAAACTGGTTTTCTTCCAACTTTGCCCTTCATGAAACGCGTCTTCCCATGCGTTTTGGTGGTTCCAACCGATGCATACGTGTGCGCTTGCATCTATATAATTGTTACCACGCTTAGTGAGTGCGTTCAGCATAAACCACCAGTCAACCCACATCCGTTCGAAGCCCGATTTAGGCTACCCACACCTTGGCGATCTAGATCTAGTGTTGGATATTCGTCGGTGATAATGGTGGAATTTTGCCTTGCTAAACTGCTACGAATTGTTGGCCTCGGGTATAAATGGTCGGGGGCTGATACGTCACTAATTGAGTGTCAAGGCCTCGGGTACATAAAGCAACATAACATGGAAGAACTTAATGCTGAGCTAAAGAAAATTAGAGACGAAATCCACGACCGGGTCATGGAAGAATTGAATATTGAACTAAAGAAAATAAGAGACGAGATTCAAGAACAAGTCATGGAGGTGCAGAATGTAGAGCTAAAGAAGATGAGACAAGACATCGATAATATTCAAGAGCAAGTCATGGAAATTTTAAATGTCTTAAAGAATATTGTTACAGTTGGGGATACTTCTAACAATTTAGTCGAACCTCGTAATAATTCATCACCTAGGGTCGACCCACCTCTTTGTCAATCAACAGATGGATTCCCCCAAAACAGTTCGTCACATGACACTCAGCTTTCCAAGAAAGGCCAACAAGCTCCTACAATCTGTCAGGTTGAGTTTGCATTCCAAGATGGTCAAACATCAAAGGCTAATTTAAAAGGTAAAGAAAAAGAAAATGCTACCAATAGAAATGCTGAAGAAACTACAGGGAAAGAATATGTTCGATGGGGAAACACAACAGAACAACTGCCAGTACCTTTAATTAATAAAGAGCCGCACCTTGAAACGAATAGAAGCTCTTTTAAAAGGAAAAATAAAGTTCAGGCAGTAGTTTCGAAGCGCAAGGGGAAGTACCAACAAGGATTCGTGGCATACAGTCCTTCTACGGTACCCATAAACTCATTGACTCTGCAGGATGATCCACAAACATTACCTGACAATCATAGTAGTCGGAGACAACTAAAGCGAGAGAGCTTTCATTCGATCCCAATATCCTATACCGAGTTGTTATCCCAATTATTTCAAGGAGCTGTAGGTCATTCAACTGAGAATTGTACCTCACTGAAGCATAAAGTGCAAGTGCTAATGAGGGCAGGATGGCTAAAGTTTTCAAAGGAAGATGGTCAATACATGAAGCACTAG

Coding sequence (CDS)

ATGGGAGGCGCCAGGCGCCTGGGAAGGCTGCAGAAAACTGGTTTTCTTCCAACTTTGCCCTTCATGAAACGCGTCTTCCCATGCGTTTTGGTGGTTCCAACCGATGCATACGTGTGCGCTTGCATCTATATAATTGTTACCACGCTTAGTGAGTGCGTTCAGCATAAACCACCAGTCAACCCACATCCGTTCGAAGCCCGATTTAGGCTACCCACACCTTGGCGATCTAGATCTAGTGTTGGATATTCGTCGGTGATAATGGTGGAATTTTGCCTTGCTAAACTGCTACGAATTGTTGGCCTCGGGTATAAATGGTCGGGGGCTGATACGTCACTAATTGAGTGTCAAGGCCTCGGGTACATAAAGCAACATAACATGGAAGAACTTAATGCTGAGCTAAAGAAAATTAGAGACGAAATCCACGACCGGGTCATGGAAGAATTGAATATTGAACTAAAGAAAATAAGAGACGAGATTCAAGAACAAGTCATGGAGGTGCAGAATGTAGAGCTAAAGAAGATGAGACAAGACATCGATAATATTCAAGAGCAAGTCATGGAAATTTTAAATGTCTTAAAGAATATTGTTACAGTTGGGGATACTTCTAACAATTTAGTCGAACCTCGTAATAATTCATCACCTAGGGTCGACCCACCTCTTTGTCAATCAACAGATGGATTCCCCCAAAACAGTTCGTCACATGACACTCAGCTTTCCAAGAAAGGCCAACAAGCTCCTACAATCTGTCAGGTTGAGTTTGCATTCCAAGATGGTCAAACATCAAAGGCTAATTTAAAAGGTAAAGAAAAAGAAAATGCTACCAATAGAAATGCTGAAGAAACTACAGGGAAAGAATATGTTCGATGGGGAAACACAACAGAACAACTGCCAGTACCTTTAATTAATAAAGAGCCGCACCTTGAAACGAATAGAAGCTCTTTTAAAAGGAAAAATAAAGTTCAGGCAGTAGTTTCGAAGCGCAAGGGGAAGTACCAACAAGGATTCGTGGCATACAGTCCTTCTACGGTACCCATAAACTCATTGACTCTGCAGGATGATCCACAAACATTACCTGACAATCATAGTAGTCGGAGACAACTAAAGCGAGAGAGCTTTCATTCGATCCCAATATCCTATACCGAGTTGTTATCCCAATTATTTCAAGGAGCTGTAGGTCATTCAACTGAGAATTGTACCTCACTGAAGCATAAAGTGCAAGTGCTAATGAGGGCAGGATGGCTAAAGTTTTCAAAGGAAGATGGTCAATACATGAAGCACTAG

Protein sequence

MGGARRLGRLQKTGFLPTLPFMKRVFPCVLVVPTDAYVCACIYIIVTTLSECVQHKPPVNPHPFEARFRLPTPWRSRSSVGYSSVIMVEFCLAKLLRIVGLGYKWSGADTSLIECQGLGYIKQHNMEELNAELKKIRDEIHDRVMEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQEQVMEILNVLKNIVTVGDTSNNLVEPRNNSSPRVDPPLCQSTDGFPQNSSSHDTQLSKKGQQAPTICQVEFAFQDGQTSKANLKGKEKENATNRNAEETTGKEYVRWGNTTEQLPVPLINKEPHLETNRSSFKRKNKVQAVVSKRKGKYQQGFVAYSPSTVPINSLTLQDDPQTLPDNHSSRRQLKRESFHSIPISYTELLSQLFQGAVGHSTENCTSLKHKVQVLMRAGWLKFSKEDGQYMKH
Homology
[Close]
BLAST of Moc06g18860 vs. NCBI nr
Match: XP_022153553.1 (uncharacterized protein LOC111021029 [Momordica charantia])

HSP 1 Score: 391.3 bits (1004), Expect = 1.0e-104
Identity = 216/270 (80.00%), Postives = 228/270 (84.44%), Query Frame = 0 

Query: 126 MEELNAELKKIRDEIHDRVMEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQEQV 185
           MEE NAELK I DEIH+RV+EELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQ+QV
Sbjct: 1   MEEFNAELKNISDEIHERVIEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQKQV 60

Query: 186 MEILNVLKNIVTVGDTS--NNLVEPRNNSSPRVDPPLCQSTDGFPQNSSSHDTQLSKKGQ 245
           M+ILNVLKNIVTVG TS  NNLVEP NNSSPRVDPPLCQS +GFPQ+SSSHD QLSKKGQ
Sbjct: 61  MKILNVLKNIVTVGGTSQPNNLVEPYNNSSPRVDPPLCQSKEGFPQHSSSHDAQLSKKGQ 120

Query: 246 QAPTICQVEFAFQDGQTSKA----NLKGKEKENATNRNAEETTGKEYVRWGNTTEQLPVP 305
           Q PT CQVEF F+D QT K     NLKG+EKEN T             RWG   EQLPVP
Sbjct: 121 QVPTNCQVEFTFKDEQTPKVNYSDNLKGEEKENVTQ------------RWGKAIEQLPVP 180

Query: 306 LINKEPHLETNRSSFKRKNKVQAVVSKRKGKYQQGFVAYSPSTVPINSLTLQDDPQTLPD 365
           LINKEPH + N+SS KRKNKV AVVSKRK KYQQGFVAYSPSTVPINS+TLQDDPQTLP+
Sbjct: 181 LINKEPHPKMNKSSIKRKNKVLAVVSKRKRKYQQGFVAYSPSTVPINSMTLQDDPQTLPN 240

Query: 366 NHSSRRQLKRESFHSIPISYTELLSQLFQG 390
           NHSSRRQLKRESFHSIP SYTELLSQLFQG
Sbjct: 241 NHSSRRQLKRESFHSIPTSYTELLSQLFQG 258

[Close]
BLAST of Moc06g18860 vs. NCBI nr
Match: XP_022143515.1 (uncharacterized protein LOC111013388 [Momordica charantia])

HSP 1 Score: 140.6 bits (353), Expect = 3.2e-29
Identity = 84/115 (73.04%), Postives = 91/115 (79.13%), Query Frame = 0 

Query: 108 ADTSLIECQGLGYIKQHNMEELNAELKKIRDEIHDRVMEELNIELKKIRDEIQEQVMEVQ 167
           A++  +   G  YIKQ+NMEE NAELKKIRDEIH+RV+EELN ELK+IRDEIQE V EV 
Sbjct: 28  ANSGDLHHSGDWYIKQYNMEEFNAELKKIRDEIHERVIEELNXELKEIRDEIQEHVXEVH 87

Query: 168 NVELKKMRQDIDNIQEQVMEILNVLKNIVTVGDTS--NNLVEPRNNSSPRVDPPL 221
           NVELKKMRQDID IQ QV  ILNVLK IVTVGD S  NNLVEP NNSS RV P L
Sbjct: 88  NVELKKMRQDIDKIQGQVTGILNVLKKIVTVGDISQPNNLVEPHNNSSLRVGPSL 142

[Close]
BLAST of Moc06g18860 vs. NCBI nr
Match: XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])

HSP 1 Score: 69.7 bits (169), Expect = 6.9e-08
Identity = 37/93 (39.78%), Postives = 50/93 (53.76%), Query Frame = 0 

Query: 359 DNHSSRRQLKRESFHSIPISYTELLSQLFQ------------------------------ 418
           +  ++R   K+  F  IP++YTELL QLFQ                              
Sbjct: 335 EQQTNRGARKQTQFDPIPMTYTELLPQLFQNNQLAPVPVDPIQPPYPRWYDTNARCDYHA 394

Query: 419 GAVGHSTENCTSLKHKVQVLMRAGWLKFSKEDG 422
           GA+GHSTENCT+LK++VQ L++AGWL F KE+G
Sbjct: 395 GAIGHSTENCTALKYRVQALIKAGWLNFKKENG 427

[Close]
BLAST of Moc06g18860 vs. NCBI nr
Match: TYK21788.1 (uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 3.4e-07
Identity = 51/162 (31.48%), Postives = 68/162 (41.98%), Query Frame = 0 

Query: 301 INKEPHLETNRSSFKRKNKVQAVVSKRKGKYQQGFVAY--SPSTVPINSLTL-------- 360
           I+K+   E +   F    K +++  +R  KY+Q F +Y  + S +P NS  L        
Sbjct: 271 ISKKKEGEVHEIGFPNSGKHKSIFGQR--KYEQNFPSYISNVSYIPYNSYVLAHTVSETP 330

Query: 361 ----QDDPQTLPDNHSSRRQLKRESFHSIPISYTELLSQLFQ------------------ 419
                + PQ       S+       F  IP++YTELL QL Q                  
Sbjct: 331 KPVNSNSPQPFVQRQGSKTNSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIPIRPPYPK 390

[Close]
BLAST of Moc06g18860 vs. NCBI nr
Match: KAA0067953.1 (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 4.5e-07
Identity = 58/185 (31.35%), Postives = 79/185 (42.70%), Query Frame = 0 

Query: 284 KEYV-RWGNTTEQLPVPLINKE---PHLETNRSSFKRK--NKVQAVVSKRKGKYQQGFVA 343
           KEY  RW +   ++  PL +KE     + T R+ F  +   K +++  +R  KY+Q F +
Sbjct: 217 KEYAQRWRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMIGKHKSIFGQR--KYEQNFPS 276

Query: 344 Y--SPSTVPINSLTL------------QDDPQTLPDNHSSRRQLKRESFHSIPISYTELL 403
           Y  + S +P NS  L             + PQ       S+       F  IP++Y ELL
Sbjct: 277 YISNVSYIPYNSYVLAHTVSETPKPVNSNSPQPFVKRQGSKINSDTWRFDPIPMTYIELL 336

Query: 404 SQLFQ------------------------------GAVGHSTENCTSLKHKVQVLMRAGW 419
            QL Q                              G VGHSTENC +LK KVQ L+ AGW
Sbjct: 337 RQLIQNRQLALIPMIPIRPPYPKWFDSNARCDYHAGGVGHSTENCLALKRKVQSLINAGW 396

[Close]
BLAST of Moc06g18860 vs. ExPASy TrEMBL
Match: A0A6J1DHS7 (uncharacterized protein LOC111021029 OS=Momordica charantia OX=3673 GN=LOC111021029 PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 5.0e-105
Identity = 216/270 (80.00%), Postives = 228/270 (84.44%), Query Frame = 0 

Query: 126 MEELNAELKKIRDEIHDRVMEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQEQV 185
           MEE NAELK I DEIH+RV+EELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQ+QV
Sbjct: 1   MEEFNAELKNISDEIHERVIEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQKQV 60

Query: 186 MEILNVLKNIVTVGDTS--NNLVEPRNNSSPRVDPPLCQSTDGFPQNSSSHDTQLSKKGQ 245
           M+ILNVLKNIVTVG TS  NNLVEP NNSSPRVDPPLCQS +GFPQ+SSSHD QLSKKGQ
Sbjct: 61  MKILNVLKNIVTVGGTSQPNNLVEPYNNSSPRVDPPLCQSKEGFPQHSSSHDAQLSKKGQ 120

Query: 246 QAPTICQVEFAFQDGQTSKA----NLKGKEKENATNRNAEETTGKEYVRWGNTTEQLPVP 305
           Q PT CQVEF F+D QT K     NLKG+EKEN T             RWG   EQLPVP
Sbjct: 121 QVPTNCQVEFTFKDEQTPKVNYSDNLKGEEKENVTQ------------RWGKAIEQLPVP 180

Query: 306 LINKEPHLETNRSSFKRKNKVQAVVSKRKGKYQQGFVAYSPSTVPINSLTLQDDPQTLPD 365
           LINKEPH + N+SS KRKNKV AVVSKRK KYQQGFVAYSPSTVPINS+TLQDDPQTLP+
Sbjct: 181 LINKEPHPKMNKSSIKRKNKVLAVVSKRKRKYQQGFVAYSPSTVPINSMTLQDDPQTLPN 240

Query: 366 NHSSRRQLKRESFHSIPISYTELLSQLFQG 390
           NHSSRRQLKRESFHSIP SYTELLSQLFQG
Sbjct: 241 NHSSRRQLKRESFHSIPTSYTELLSQLFQG 258

[Close]
BLAST of Moc06g18860 vs. ExPASy TrEMBL
Match: A0A6J1CP05 (uncharacterized protein LOC111013388 OS=Momordica charantia OX=3673 GN=LOC111013388 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.5e-29
Identity = 84/115 (73.04%), Postives = 91/115 (79.13%), Query Frame = 0 

Query: 108 ADTSLIECQGLGYIKQHNMEELNAELKKIRDEIHDRVMEELNIELKKIRDEIQEQVMEVQ 167
           A++  +   G  YIKQ+NMEE NAELKKIRDEIH+RV+EELN ELK+IRDEIQE V EV 
Sbjct: 28  ANSGDLHHSGDWYIKQYNMEEFNAELKKIRDEIHERVIEELNXELKEIRDEIQEHVXEVH 87

Query: 168 NVELKKMRQDIDNIQEQVMEILNVLKNIVTVGDTS--NNLVEPRNNSSPRVDPPL 221
           NVELKKMRQDID IQ QV  ILNVLK IVTVGD S  NNLVEP NNSS RV P L
Sbjct: 88  NVELKKMRQDIDKIQGQVTGILNVLKKIVTVGDISQPNNLVEPHNNSSLRVGPSL 142

[Close]
BLAST of Moc06g18860 vs. ExPASy TrEMBL
Match: A0A6J1E2J7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.3e-08
Identity = 37/93 (39.78%), Postives = 50/93 (53.76%), Query Frame = 0 

Query: 359 DNHSSRRQLKRESFHSIPISYTELLSQLFQ------------------------------ 418
           +  ++R   K+  F  IP++YTELL QLFQ                              
Sbjct: 335 EQQTNRGARKQTQFDPIPMTYTELLPQLFQNNQLAPVPVDPIQPPYPRWYDTNARCDYHA 394

Query: 419 GAVGHSTENCTSLKHKVQVLMRAGWLKFSKEDG 422
           GA+GHSTENCT+LK++VQ L++AGWL F KE+G
Sbjct: 395 GAIGHSTENCTALKYRVQALIKAGWLNFKKENG 427

[Close]
BLAST of Moc06g18860 vs. ExPASy TrEMBL
Match: A0A5D3DEB3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00440 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.7e-07
Identity = 51/162 (31.48%), Postives = 68/162 (41.98%), Query Frame = 0 

Query: 301 INKEPHLETNRSSFKRKNKVQAVVSKRKGKYQQGFVAY--SPSTVPINSLTL-------- 360
           I+K+   E +   F    K +++  +R  KY+Q F +Y  + S +P NS  L        
Sbjct: 271 ISKKKEGEVHEIGFPNSGKHKSIFGQR--KYEQNFPSYISNVSYIPYNSYVLAHTVSETP 330

Query: 361 ----QDDPQTLPDNHSSRRQLKRESFHSIPISYTELLSQLFQ------------------ 419
                + PQ       S+       F  IP++YTELL QL Q                  
Sbjct: 331 KPVNSNSPQPFVQRQGSKTNSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIPIRPPYPK 390

[Close]
BLAST of Moc06g18860 vs. ExPASy TrEMBL
Match: A0A5A7VIM6 (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001370 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.2e-07
Identity = 58/185 (31.35%), Postives = 79/185 (42.70%), Query Frame = 0 

Query: 284 KEYV-RWGNTTEQLPVPLINKE---PHLETNRSSFKRK--NKVQAVVSKRKGKYQQGFVA 343
           KEY  RW +   ++  PL +KE     + T R+ F  +   K +++  +R  KY+Q F +
Sbjct: 217 KEYAQRWRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMIGKHKSIFGQR--KYEQNFPS 276

Query: 344 Y--SPSTVPINSLTL------------QDDPQTLPDNHSSRRQLKRESFHSIPISYTELL 403
           Y  + S +P NS  L             + PQ       S+       F  IP++Y ELL
Sbjct: 277 YISNVSYIPYNSYVLAHTVSETPKPVNSNSPQPFVKRQGSKINSDTWRFDPIPMTYIELL 336

Query: 404 SQLFQ------------------------------GAVGHSTENCTSLKHKVQVLMRAGW 419
            QL Q                              G VGHSTENC +LK KVQ L+ AGW
Sbjct: 337 RQLIQNRQLALIPMIPIRPPYPKWFDSNARCDYHAGGVGHSTENCLALKRKVQSLINAGW 396

The following BLAST results are available for this feature:
BLAST of Moc06g18860 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022153553.11.0e-10480.00uncharacterized protein LOC111021029 [Momordica charantia][more]
XP_022143515.13.2e-2973.04uncharacterized protein LOC111013388 [Momordica charantia][more]
XP_022158986.16.9e-0839.78LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia][more]
TYK21788.13.4e-0731.48uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa][more]
KAA0067953.14.5e-0731.35RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein... [more]
BLAST of Moc06g18860 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc06g18860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DHS75.0e-10580.00uncharacterized protein LOC111021029 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A6J1CP051.5e-2973.04uncharacterized protein LOC111013388 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1E2J73.3e-0839.78Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1[more]
A0A5D3DEB31.7e-0731.48Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7VIM62.2e-0731.35RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein... [more]
BLAST of Moc06g18860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 126..191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 260..280
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 263..280
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 202..243

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g18860.1Moc06g18860.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process