Moc06g17910 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g17910
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr6: 14020145 .. 14021094 (-)
RNA-Seq Expression	Moc06g17910
Synteny	Moc06g17910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGTAGGCTTGGGCTTGGCACAAAAAGATTGCCACTCATGCTTCTGGATGGTGCTGACCATGAAGTCTGGCATTAAGTAATCAGTTAGGAAGCCCCTCTCACCCAGCAGGTTTCTCTCTTTCAATTCCTCAAATCGTTCGGATGCTGCAGCATCAATGAACCTCTCCTACTCTAGCTCTCCTACAACAACCTTTTTTTCCCCTTTTCTCTGACTTGGGCCTCTTCATTCTTTATTTCCTTAGCGTTTCGCTCTTCACCTTATTTTTCTTGCCAGCTAGTTGCTTGGGAGATGCCCTTGTGGCCATAGGGACTACTTCTTCCTCTTTGTCACTCTGGAGCTCTTCAGTTGCTTCTTCTTCCTCTTTATCTTTGGCTCCACTTGGCTCACCTCGCTTGCCGAAGCCCAACTCATCGAAACCCATGAGTATCCGCTCGTTATCTAATAGAGTTTTGACAAACTCCTCCACCGCCTACACTATTTCAAGAGAAGGTCGGAGCTTTGTTTTCGTTCCTCTCCTCTGGTGGTAATTCTTCGTTTTCAACCGGTCGCTCATTTGCGGGATTTCTACGTCTGGGGCTACCCTTTCTTCCTCTTCAGCGGGTTTGGGGGACGTTTCACCTTGGTAGGCTTTCGCCCTCTTTTTGCTTACTTTTTCTTCTTTGGGGGGAAGAAGCTACCTCTTGTCACAAGTGCTTTTCTGGTTGCTATTCTGGTGGAGGAGGAGACTTTCAAGGGGTCTTCTATAGTGATTTTTTGGGCGAACGAGACGGGGTGAGGCTAGGAGGAGGAACGACCTTCTTACCTTTCATTGCCCTTGTCTTTAGTCTAGGCATGGTGATACACTGGTGCTGTAGGAATGGTGCTGCTCGAGGGCTGAGGTTATGGTGGAGGTTGGTCAGGGCAGAAATTGGAGAAGATGACGAGAAGGGGAAAATAGTTTTTTAA

mRNA sequence

ATGATTGTAGGCTTGGGCTTGGCACAAAAAGATTGCCACTCATGCTTCTGGATGGTGCTGACCATGAAGTCTGGCATTAATTGCTTGGGAGATGCCCTTGTGGCCATAGGGACTACTTCTTCCTCTTTGTCACTCTGGAGCTCTTCAGTTGCTTCTTCTTCCTCTTTATCTTTGGCTCCACTTGGCTCACCTCGCTTGCCGAAGCCCAACTCATCGAAACCCATGAGTATCCGCTCGTTATCTAATAGAGTTTTGACAAACTCCTCCACCGCCTACACTATTTCAAGAGAAGGTCGGAGCTTTGTTTTCGTTCCTCTCCTCTGGTGCGGGTTTGGGGGACGTTTCACCTTGGTAGGCTTTCGCCCTCTTTTTGCTTACTTTTTCTTCTTTGGGGGGAAGAAGCTACCTCTTGTCACAAGTGCTTTTCTGGTTGCTATTCTGGTGGAGGAGGAGACTTTCAAGGGGTCTTCTATAGTGATTTTTTGGGCGAACGAGACGGGGAATGGTGCTGCTCGAGGGCTGAGGTTATGGTGGAGGTTGGTCAGGGCAGAAATTGGAGAAGATGACGAGAAGGGGAAAATAGTTTTTTAA

Coding sequence (CDS)

ATGATTGTAGGCTTGGGCTTGGCACAAAAAGATTGCCACTCATGCTTCTGGATGGTGCTGACCATGAAGTCTGGCATTAATTGCTTGGGAGATGCCCTTGTGGCCATAGGGACTACTTCTTCCTCTTTGTCACTCTGGAGCTCTTCAGTTGCTTCTTCTTCCTCTTTATCTTTGGCTCCACTTGGCTCACCTCGCTTGCCGAAGCCCAACTCATCGAAACCCATGAGTATCCGCTCGTTATCTAATAGAGTTTTGACAAACTCCTCCACCGCCTACACTATTTCAAGAGAAGGTCGGAGCTTTGTTTTCGTTCCTCTCCTCTGGTGCGGGTTTGGGGGACGTTTCACCTTGGTAGGCTTTCGCCCTCTTTTTGCTTACTTTTTCTTCTTTGGGGGGAAGAAGCTACCTCTTGTCACAAGTGCTTTTCTGGTTGCTATTCTGGTGGAGGAGGAGACTTTCAAGGGGTCTTCTATAGTGATTTTTTGGGCGAACGAGACGGGGAATGGTGCTGCTCGAGGGCTGAGGTTATGGTGGAGGTTGGTCAGGGCAGAAATTGGAGAAGATGACGAGAAGGGGAAAATAGTTTTTTAA

Protein sequence

MIVGLGLAQKDCHSCFWMVLTMKSGINCLGDALVAIGTTSSSLSLWSSSVASSSSLSLAPLGSPRLPKPNSSKPMSIRSLSNRVLTNSSTAYTISREGRSFVFVPLLWCGFGGRFTLVGFRPLFAYFFFFGGKKLPLVTSAFLVAILVEEETFKGSSIVIFWANETGNGAARGLRLWWRLVRAEIGEDDEKGKIVF

Homology

[Close]

BLAST of Moc06g17910 vs. NCBI nr
Match: XP_022148130.1 (uncharacterized protein LOC111016884 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 8.6e-06
Identity = 63/153 (41.18%), Postives = 76/153 (49.67%), Query Frame = 0


Query: 29  LGDALVAIGTTSSSLSLWSSSVASS-SSLSLAPLGSPRLPKPNSSKPMSIRSLSNRVLTN 88
           LGD LV  G  SSS SLW+SS +SS   + LAPLGS  L     SKP++IRS S+RV TN
Sbjct: 98  LGDFLVGTGAASSSCSLWNSSFSSSIPYVLLAPLGSSTL-----SKPINIRSFSDRVHTN 157

Query: 89  SSTAYTISRE-------------------GRSFVFV-------PLLWCGFGGRFTLVGFR 148
           SST   +S E                   G SFV +            G GG FTL GF 
Sbjct: 158 SSTTCRVSGEKVGASSSFLSSSSASSFTTGCSFVRISSSGVTRSSSTMGSGGSFTLAGFC 217

Query: 149 PLFAYFFFFGGKKLPLVTSAFLVAILVEEETFK 155
            LFA  FFFG +   L     L  ++V  ET++
Sbjct: 218 LLFAGLFFFGEECWVLC----LKLVVVRVETYE 241

[Close]

BLAST of Moc06g17910 vs. ExPASy TrEMBL
Match: A0A6J1D229 (uncharacterized protein LOC111016884 OS=Momordica charantia OX=3673 GN=LOC111016884 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.2e-06
Identity = 63/153 (41.18%), Postives = 76/153 (49.67%), Query Frame = 0


Query: 29  LGDALVAIGTTSSSLSLWSSSVASS-SSLSLAPLGSPRLPKPNSSKPMSIRSLSNRVLTN 88
           LGD LV  G  SSS SLW+SS +SS   + LAPLGS  L     SKP++IRS S+RV TN
Sbjct: 98  LGDFLVGTGAASSSCSLWNSSFSSSIPYVLLAPLGSSTL-----SKPINIRSFSDRVHTN 157

Query: 89  SSTAYTISRE-------------------GRSFVFV-------PLLWCGFGGRFTLVGFR 148
           SST   +S E                   G SFV +            G GG FTL GF 
Sbjct: 158 SSTTCRVSGEKVGASSSFLSSSSASSFTTGCSFVRISSSGVTRSSSTMGSGGSFTLAGFC 217

Query: 149 PLFAYFFFFGGKKLPLVTSAFLVAILVEEETFK 155
            LFA  FFFG +   L     L  ++V  ET++
Sbjct: 218 LLFAGLFFFGEECWVLC----LKLVVVRVETYE 241

The following BLAST results are available for this feature:

BLAST of Moc06g17910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148130.1	8.6e-06	41.18	uncharacterized protein LOC111016884 [Momordica charantia]	[more]

BLAST of Moc06g17910 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g17910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D229	4.2e-06	41.18	uncharacterized protein LOC111016884 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]

BLAST of Moc06g17910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g17910.1	Moc06g17910.1	mRNA