Moc06g17380 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g17380
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionProtein LUTEIN DEFICIENT 5
Locationchr6: 13602548 .. 13604750 (+)
RNA-Seq ExpressionMoc06g17380
SyntenyMoc06g17380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTGCAAGATGGCCTGCCTTCATCTTCCCATCTTCACCTCTCAAGGAATTGGATTCCTCAGGGCCATGGCTTAACCAATACTACCACACCTCCAACTCCAAGGTACATTACTTCTCAATTGAACTTCTATTTTAGTTCTAAAATTATACATCTATTTTATTCCAATTTTTTTGTGTCCCTAAACTTTTAAATATTACATTTTAATTTCAAAACTTTACTAAAAAAAATTATTCTCCTGGTAATAGTTTCATAAAAAATCTCCATTCATTCTGAACTTGATACCTTGCTGCTCTAAATTTCTTTTATGATTTACGAAAATAAACAATATTTAGATGTCTATGGGTCAACATTTATTTTTGTTGACACCATTATATTTTTGACAAGTATGAGAGTGAGAAACTATAAAGTTATTTTAGGGATCACAGATCCACTTTGGACGTAAGTCCTAGTTTTCACCCAAAATGTCTCATATCATTGGAGATATTGTCCCTCAATTATATACTTACCGTGTGCCAAAAAAAAATTATATACTCATGGTCTCTTCCTTTTGGTCTAGCAGACTTTGGTCGTAGACCCAATAATTCTCCCCTTGAACAAAGCACTACCGAACCTCTCCTTAAATAGTCATTCATCCGTGTTTTATTCTCGAGCACATCACTTTTAACGAGGTGCAACTCCTCTTCACCATAGCACACCGCCTCTTGATAGTTCAACCACGGATTGCATTGAGATGGTTGGGCTAGGGGTATAAATCTAATACCAATTGTTAGGGACAATAGACTTTAAACATCTCCATTAATGGTAAGATATGTTCACTTTGAGCACATGTCCTCGTAGTTTTTGCTTTTGGTATCATCAAAAATGCCTCATATGAATTGAGATATTGACCCCCACTTATACATATCCATGATCTTTCCCTTTCTGAATGAATGTATAGGACCTGTCAAGTTTTTATTATGCTACTTACCGACAAGTACCTAAATATTGTAATAGGGCTAAAATAACCCTATATCCAAAGTCCAGAGTCTAAAAGTAGATGGTAATTTTAGGGACCAAAATAAAATAAATACGAAAGAAACGATTTAATTGTTTTTATGTTATTAGTTTGATAAATCTTCAAGTTTGAAAACAGAGTCATTCCGCAGAGTAGAAATGCAGTGTATGACCCAACATATGAATCGATGGGATTACCAGTGGATCCTCATTTGCGCATGTTTCTGGCAAGACGTGACTCAGCTGGTAATCTTCATTTCAATTCTCTCTTTAATTAATTTCTCATATACTCCATTCATATCTGTGTAATAAAAGATTTAATAAGAGCGAGTTATTTTTAGTTTTTTTTTTCCCTCGAAGATTAAGCTGGTACCATGTGTTATTCTAGAAAACTGAAAAATAGTGGTGAACAAGTAAACTTAATTTTAAAAAATAGAAAACCAAAAATGGAGGTCTAAGAGAATTTGTTTCTTTCATTTTGTTCGTTAAATTATAAGTTTAGTCTTTAAACTATAAAAGTTTATCTAACCATACTTTAAAAAGTATTTAATAAATTTTAGAACTTCTATATTTATAGGTCATTGAATTTTTAGAAGTTTCTAAGTAATCTTTTTACACTAATCATTTAAAGATTTGTAGATACAAAATAAACGGACTCAGTAGATGTTTTTTTAAGTTGTTTTAAAAATTGTTGTTAAGTTTTAAAAGCTAAGGTTGTTGGTCAGATAATGATTTAGTTTTAGATTTTTTAGAAAAAAAAAATCATTTATTTACTCGTAACTTTTCTATTTGTTTTCCATTTTTATTAAAAAAATACTTTTTAACTCTTAATCATATTTCCAAAACAAAACAAAACAAAATTTGAAAATTACTTTTTAATTGTACGTTAAATATATAATGTTGTCCCTAATACTTGTAGCCTACCTAAAAAGTTTGTAAATAGTTGATTCTCTAATCTTGTAAGACTTCCAATTTAATCTTTTTATGTATCGAAGATCGTCATAAACCATAAAAGAAGAAGAAATTAATAAACTAAAAAACGTATTTTTATCATCACGAGACTATTAATTGTTAGTAGAGTAATATTTTCAACGGGTCTATTTTCTATAGCATCGAGTCATTTCAGATTAGATAAGTTATAATAAAAATGCTAATCTAATATCCATTTTCTCCTTTTTCCTTGATTTGCAGGTGATGAGATGTGA

mRNA sequence

ATGAATCTGCAAGATGGCCTGCCTTCATCTTCCCATCTTCACCTCTCAAGGAATTGGATTCCTCAGGGCCATGGCTTAACCAATACTACCACACCTCCAACTCCAAGAGTCATTCCGCAGAGTAGAAATGCAGTGTATGACCCAACATATGAATCGATGGGATTACCAGTGGATCCTCATTTGCGCATGTTTCTGGCAAGACGTGACTCAGCTGGTGATGAGATGTGA

Coding sequence (CDS)

ATGAATCTGCAAGATGGCCTGCCTTCATCTTCCCATCTTCACCTCTCAAGGAATTGGATTCCTCAGGGCCATGGCTTAACCAATACTACCACACCTCCAACTCCAAGAGTCATTCCGCAGAGTAGAAATGCAGTGTATGACCCAACATATGAATCGATGGGATTACCAGTGGATCCTCATTTGCGCATGTTTCTGGCAAGACGTGACTCAGCTGGTGATGAGATGTGA

Protein sequence

MNLQDGLPSSSHLHLSRNWIPQGHGLTNTTTPPTPRVIPQSRNAVYDPTYESMGLPVDPHLRMFLARRDSAGDEM
Homology
BLAST of Moc06g17380 vs. NCBI nr
Match: KAG6590081.1 (hypothetical protein SDJN03_15504, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.6 bits (301), Expect = 6.0e-24
Identity = 57/69 (82.61%), Postives = 63/69 (91.30%), Query Frame = 0

Query: 1   MNLQDGLPSSSHLHLSRNWIPQGHGLTNTTTPPTPRVIPQSRNAVYDPTYESMGLPVDPH 60
           +NLQDGLPS S+LHLSRNWI +G+GL+N TTPPT R  PQ+RNAVYDPTYESMGLPVDPH
Sbjct: 204 LNLQDGLPSPSNLHLSRNWISEGNGLSNATTPPTSR-SPQNRNAVYDPTYESMGLPVDPH 263

Query: 61  LRMFLARRD 70
           LRMFLARRD
Sbjct: 264 LRMFLARRD 271

BLAST of Moc06g17380 vs. NCBI nr
Match: XP_008443728.1 (PREDICTED: uncharacterized protein LOC103487245 isoform X2 [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 7.8e-24
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 0

Query: 1   MNLQDGLPSSSHLHLSRNWIPQGHGLTNTTTPPTPRVIPQSRNAVYDPTYESMGLPVDPH 60
           +NLQD LPSSS+LHL RNWI + + L+N TTPPT R   +SRNAVYDPTYESMGLP+DPH
Sbjct: 151 LNLQDELPSSSNLHLPRNWISEDNVLSNATTPPTSRSSAESRNAVYDPTYESMGLPIDPH 210

Query: 61  LRMFLARRDSAGDEM 76
           LRMFLARRD  GDEM
Sbjct: 211 LRMFLARRDPTGDEM 225

BLAST of Moc06g17380 vs. NCBI nr
Match: KAG7023746.1 (hypothetical protein SDJN02_14772, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.9 bits (294), Expect = 3.9e-23
Identity = 57/83 (68.67%), Postives = 65/83 (78.31%), Query Frame = 0

Query: 1   MNLQDGLPSSSHLHLSRNWIPQGHGLTNTTTPPTPRV----------IPQSRNAVYDPTY 60
           +NLQDGLPS S+LHLSRNWI +G+GL+N TTPPT  +           PQ+RNAVYDPTY
Sbjct: 202 LNLQDGLPSPSNLHLSRNWISEGNGLSNATTPPTSSLNLIKLKFRNRSPQNRNAVYDPTY 261

Query: 61  ESMGLPVDPHLRMFLARRDSAGD 74
           ESMGLPVDPHLRMFLARRD  G+
Sbjct: 262 ESMGLPVDPHLRMFLARRDPTGN 284

BLAST of Moc06g17380 vs. NCBI nr
Match: XP_008443727.1 (PREDICTED: uncharacterized protein LOC103487245 isoform X1 [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 5.6e-22
Identity = 53/72 (73.61%), Postives = 60/72 (83.33%), Query Frame = 0

Query: 1   MNLQDGLPSSSHLHLSRNWIPQGHGLTNTTTPPTPRVIPQSRNAVYDPTYESMGLPVDPH 60
           +NLQD LPSSS+LHL RNWI + + L+N TTPPT R   +SRNAVYDPTYESMGLP+DPH
Sbjct: 151 LNLQDELPSSSNLHLPRNWISEDNVLSNATTPPTSRSSAESRNAVYDPTYESMGLPIDPH 210

Query: 61  LRMFLARRDSAG 73
           LRMFLARRD  G
Sbjct: 211 LRMFLARRDPTG 222

BLAST of Moc06g17380 vs. NCBI nr
Match: KAF3452430.1 (hypothetical protein FNV43_RR02863 [Rhamnella rubrinervis])

HSP 1 Score: 78.2 bits (191), Expect = 3.4e-11
Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 0

Query: 1   MNLQDGLPSSSHLHLSRNWIPQGHGLT----NTTTPPTPRVIPQSRNAVYDPTYESMGLP 60
           M+ +D +P SS+L L+ +WIPQG G      +T + P  R+ P  +NAVYDP YE+MGLP
Sbjct: 353 MSWRDNIPPSSNLQLA-SWIPQGQGSQGYNYSTLSAPNSRLRP-LKNAVYDPMYEAMGLP 412

Query: 61  VDPHLRMFLARRDS 71
           VDPHLRMF+ARRD+
Sbjct: 413 VDPHLRMFVARRDN 424

BLAST of Moc06g17380 vs. ExPASy TrEMBL
Match: A0A1S3B8P4 (uncharacterized protein LOC103487245 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487245 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.8e-24
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 0

Query: 1   MNLQDGLPSSSHLHLSRNWIPQGHGLTNTTTPPTPRVIPQSRNAVYDPTYESMGLPVDPH 60
           +NLQD LPSSS+LHL RNWI + + L+N TTPPT R   +SRNAVYDPTYESMGLP+DPH
Sbjct: 151 LNLQDELPSSSNLHLPRNWISEDNVLSNATTPPTSRSSAESRNAVYDPTYESMGLPIDPH 210

Query: 61  LRMFLARRDSAGDEM 76
           LRMFLARRD  GDEM
Sbjct: 211 LRMFLARRDPTGDEM 225

BLAST of Moc06g17380 vs. ExPASy TrEMBL
Match: A0A1S3B887 (uncharacterized protein LOC103487245 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487245 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.7e-22
Identity = 53/72 (73.61%), Postives = 60/72 (83.33%), Query Frame = 0

Query: 1   MNLQDGLPSSSHLHLSRNWIPQGHGLTNTTTPPTPRVIPQSRNAVYDPTYESMGLPVDPH 60
           +NLQD LPSSS+LHL RNWI + + L+N TTPPT R   +SRNAVYDPTYESMGLP+DPH
Sbjct: 151 LNLQDELPSSSNLHLPRNWISEDNVLSNATTPPTSRSSAESRNAVYDPTYESMGLPIDPH 210

Query: 61  LRMFLARRDSAG 73
           LRMFLARRD  G
Sbjct: 211 LRMFLARRDPTG 222

BLAST of Moc06g17380 vs. ExPASy TrEMBL
Match: A0A6P6FXF1 (uncharacterized protein LOC112490671 OS=Ziziphus jujuba OX=326968 GN=LOC112490671 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.6e-09
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 0

Query: 4   QDGLPSSSHLHLSRNWIPQGHGL--TNTTTPPTPRVIPQSRNAVYDPTYESMGLPVDPHL 63
           QD +P S +L L+ +WI QG G    N +T  T ++    RN VYDP YE+MGLPVDPHL
Sbjct: 364 QDNIPPSPNLELA-SWISQGQGSQGLNFSTSNT-QISRPMRNTVYDPMYEAMGLPVDPHL 423

Query: 64  RMFLARRDSAGDEM 76
           RMF+ RRD+  +++
Sbjct: 424 RMFVTRRDTGNEDL 435

BLAST of Moc06g17380 vs. ExPASy TrEMBL
Match: A0A498IKA5 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_036895 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-06
Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = 0

Query: 10  SSHLHLSRNWIPQG---HGLTNTTTPPTPRVIPQSRNAVYDPTYESMGLPVDPHLRMFLA 69
           + +L  + NW+PQG    GL N +   +       +NA+YDP YE+MGLP+DPHLR+FLA
Sbjct: 558 AQNLLANNNWLPQGQSSQGLQNYSNNASASSSRAIKNALYDPKYEAMGLPIDPHLRLFLA 617

Query: 70  RRDSAGD 74
           ++    D
Sbjct: 618 QQRREND 624

BLAST of Moc06g17380 vs. ExPASy TrEMBL
Match: A0A540L3H4 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_033433 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-06
Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = 0

Query: 10  SSHLHLSRNWIPQG---HGLTNTTTPPTPRVIPQSRNAVYDPTYESMGLPVDPHLRMFLA 69
           + +L  + NW+PQG    GL N +   +       +NA+YDP YE+MGLP+DPHLR+FLA
Sbjct: 300 AQNLLANNNWLPQGQSSQGLQNYSNNASASSSRAIKNALYDPKYEAMGLPIDPHLRLFLA 359

Query: 70  RRDSAGD 74
           ++    D
Sbjct: 360 QQRREND 366

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6590081.16.0e-2482.61hypothetical protein SDJN03_15504, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_008443728.17.8e-2474.67PREDICTED: uncharacterized protein LOC103487245 isoform X2 [Cucumis melo][more]
KAG7023746.13.9e-2368.67hypothetical protein SDJN02_14772, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_008443727.15.6e-2273.61PREDICTED: uncharacterized protein LOC103487245 isoform X1 [Cucumis melo][more]
KAF3452430.13.4e-1155.41hypothetical protein FNV43_RR02863 [Rhamnella rubrinervis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3B8P43.8e-2474.67uncharacterized protein LOC103487245 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3B8872.7e-2273.61uncharacterized protein LOC103487245 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6P6FXF12.6e-0950.00uncharacterized protein LOC112490671 OS=Ziziphus jujuba OX=326968 GN=LOC11249067... [more]
A0A498IKA52.1e-0643.28Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_036895 PE=4 SV=1[more]
A0A540L3H42.1e-0643.28Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_033433 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g17380.1Moc06g17380.1mRNA