Moc06g17170 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g17170
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	caffeic acid 3-O-methyltransferase-like
Location	chr6: 13438769 .. 13440176 (+)
RNA-Seq Expression	Moc06g17170
Synteny	Moc06g17170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTCGTTTTATGATGTAGCTCTACCATCTCCCATTCCGAGGATTAGCAGCAAGTCGTGGGAGATCATCAAACGTGCCCAAGGTCGGAACCTGAGGTACGCTTTGTGGGGCGAAGCTCTCGTTTCAAACTATCACCTTTTCTCCAGCGGTCTCAGCTTACACGACCGGCCGGACAAGCACAATAAACTACCCAAACGTCGGCAACATAGATCCGAGAAAAGCAAGGCTTCAGAAGGTAACCTTTGCTTCGAATTTCTACTTGGACTTTTGATCTTCTCGCTGACTTCGATTTCTTTACAGGGATGGCTTCAAAGTTCCTTGCCCTCGGCAGTGGCAAACGACAGCGTGCTTCAGCCTCAATTGCGCAACCGGCCCCTCCTCAAGCTCGTCAGCGTACGAGCACTGTTGACGTCCCGGCCCCCGAGCTAGCTAATCTGGCCAAGGTCCAAGCCCTCCAAGCTCAGCCTCTACAGATAGTCGCGGGGGGCGAGGGGTCGGTAGCCCCTTTGCAGCGGAATAAGCAAGGGAGGGACTCACTTCGATTTGAGGAGGTTACCTCCAAATCTCCGCCACCACCTATCGTGGTCGACTCGGAGGAAGGGTCCCCATTAGGTTTGCAATCCTGCGACGGGTTCTGATTCTCGTTCAAGCTCACGTTTTCACCTCCGAGCATCCATGATGTCACGACTAAGGTGAGATCCTTAAACTCTCGCCGGGTAGAGCGAGCTGTCCAGACGCTCGAGAATCCGGGAGACGCGTTGAGGAAGACAATGGCTCTTGCTGCAGAGGTAACTTCATCTACTTTGCTTCTCTCATTTCTTGTTTTTGTTAGTTGGTTAGTTAGTTTTGGTTTATTTTTTTTTCCTTTTTAACGTCAGACCTTTATTGTTGCACTACCACGCTTGACTTTCTGCGTCCATGGTGAGCTCTGAGCTCGAAGGTCGATACCTCAAGGAAAAGAGGAGATTAGGGCCTTATACGAGCGGTGAATTGCTGAGCTTGAGGTAGAGGTGGGGCAAACACGAGTCGAGATGGAAGCTGAGGTTGACAGATCTCAAGCCTTGATCGCTCAAGCACGTGCCGACCTGCAGAACACCAGGGGGCAAGGCGAGACTTCGGACAAAGGTTGGAGGGAAGCTCAACAGAATATGAAGAGCTGGGCTTACTTAGAAAAGAAGGTGAAATAGTTCCTTGAATTTGATGGCCTTGCACGCGACCTTGGGACAAGGGTTTCTACTACGCCATCGGGAAGCTCGAGATCACTTGCTCGGAAGAAGACATCACCGTCGTCGAGCAGGAGTATGAGGCCATCTGGGTCGACCGTCCTACTGCCGTTGGCGAGGGAGCCGAGACAGCGAATGCCAATGTTGGAGCCAGCAAGCCCAACGAAGATGATGCTCCTTAG

mRNA sequence

ATGACGTCGTTTTATGATGTAGCTCTACCATCTCCCATTCCGAGGATTAGCAGCAAGTCGTGGGAGATCATCAAACGTGCCCAAGGTCGGAACCTGAGGTACGCTTTGTGGGGCGAAGCTCTCGTTTCAAACTATCACCTTTTCTCCAGCGGTCTCAGCTTACACGACCGGCCGGACAAGCACAATAAACTACCCAAACGTCGGCAACATAGATCCGAGAAAAGCAAGGCTTCAGAAGGGATGGCTTCAAAGTTCCTTGCCCTCGGCAGTGGCAAACGACAGCGTGCTTCAGCCTCAATTGCGCAACCGGCCCCTCCTCAAGCTCGTCAGCGTACGAGCACTGTTGACGTCCCGGCCCCCGAGCTAGCTAATCTGGCCAAGGTCCAAGCCCTCCAAGCTCAGCCTCTACAGATAGTCGCGGGGGGCGAGGGGTCGGTAGCCCCTTTGCAGCGGAATAAGCAAGGGAGGGACTCACTTCGATTTGAGGAGGTTACCTCCAAATCTCCGCCACCACCTATCGTGGTCGACTCGGAGGAAGGGTCCCCATTAGAGCGAGCTGTCCAGACGCTCGAGAATCCGGGAGACGCGTTGAGGAAGACAATGGCTCTTGCTGCAGAGACCTTTATTGTTGCACTACCACGCTTGACTTTCTGCGTCCATGAGGTGGGGCAAACACGAGTCGAGATGGAAGCTGAGGTTGACAGATCTCAAGCCTTGATCGCTCAAGCACGTGCCGACCTGCAGAACACCAGGGGGCAAGGCGAGACTTCGGACAAAGGTTGGAGGGAAGCTCAACAGAATATGAAGAGCTGGGCTTACTTAGAAAAGAAGCTCGAGATCACTTGCTCGGAAGAAGACATCACCGTCGTCGAGCAGGAGTATGAGGCCATCTGGGTCGACCGTCCTACTGCCGTTGGCGAGGGAGCCGAGACAGCGAATGCCAATGTTGGAGCCAGCAAGCCCAACGAAGATGATGCTCCTTAG

Coding sequence (CDS)

ATGACGTCGTTTTATGATGTAGCTCTACCATCTCCCATTCCGAGGATTAGCAGCAAGTCGTGGGAGATCATCAAACGTGCCCAAGGTCGGAACCTGAGGTACGCTTTGTGGGGCGAAGCTCTCGTTTCAAACTATCACCTTTTCTCCAGCGGTCTCAGCTTACACGACCGGCCGGACAAGCACAATAAACTACCCAAACGTCGGCAACATAGATCCGAGAAAAGCAAGGCTTCAGAAGGGATGGCTTCAAAGTTCCTTGCCCTCGGCAGTGGCAAACGACAGCGTGCTTCAGCCTCAATTGCGCAACCGGCCCCTCCTCAAGCTCGTCAGCGTACGAGCACTGTTGACGTCCCGGCCCCCGAGCTAGCTAATCTGGCCAAGGTCCAAGCCCTCCAAGCTCAGCCTCTACAGATAGTCGCGGGGGGCGAGGGGTCGGTAGCCCCTTTGCAGCGGAATAAGCAAGGGAGGGACTCACTTCGATTTGAGGAGGTTACCTCCAAATCTCCGCCACCACCTATCGTGGTCGACTCGGAGGAAGGGTCCCCATTAGAGCGAGCTGTCCAGACGCTCGAGAATCCGGGAGACGCGTTGAGGAAGACAATGGCTCTTGCTGCAGAGACCTTTATTGTTGCACTACCACGCTTGACTTTCTGCGTCCATGAGGTGGGGCAAACACGAGTCGAGATGGAAGCTGAGGTTGACAGATCTCAAGCCTTGATCGCTCAAGCACGTGCCGACCTGCAGAACACCAGGGGGCAAGGCGAGACTTCGGACAAAGGTTGGAGGGAAGCTCAACAGAATATGAAGAGCTGGGCTTACTTAGAAAAGAAGCTCGAGATCACTTGCTCGGAAGAAGACATCACCGTCGTCGAGCAGGAGTATGAGGCCATCTGGGTCGACCGTCCTACTGCCGTTGGCGAGGGAGCCGAGACAGCGAATGCCAATGTTGGAGCCAGCAAGCCCAACGAAGATGATGCTCCTTAG

Protein sequence

MTSFYDVALPSPIPRISSKSWEIIKRAQGRNLRYALWGEALVSNYHLFSSGLSLHDRPDKHNKLPKRRQHRSEKSKASEGMASKFLALGSGKRQRASASIAQPAPPQARQRTSTVDVPAPELANLAKVQALQAQPLQIVAGGEGSVAPLQRNKQGRDSLRFEEVTSKSPPPPIVVDSEEGSPLERAVQTLENPGDALRKTMALAAETFIVALPRLTFCVHEVGQTRVEMEAEVDRSQALIAQARADLQNTRGQGETSDKGWREAQQNMKSWAYLEKKLEITCSEEDITVVEQEYEAIWVDRPTAVGEGAETANANVGASKPNEDDAP

Homology

[Close]

BLAST of Moc06g17170 vs. NCBI nr
Match: XP_022154107.1 (caffeic acid 3-O-methyltransferase-like [Momordica charantia])

HSP 1 Score: 131.3 bits (329), Expect = 1.5e-26
Identity = 70/103 (67.96%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 4   FYDVALPSPIPRISSKSWEIIKRAQGRNLRYALWGEALVSNYHLFSSGLSLHDRPDKHNK 63
           F D     P+ RI +KSWEII+RAQGR+L+YALWGEALV N HLFSSGLS HD+PD+  K
Sbjct: 135 FLDSCPAIPVSRIDNKSWEIIRRAQGRSLKYALWGEALVLNSHLFSSGLSSHDQPDEFKK 194

Query: 64  LPKRRQHRSEKSKASEGMASKFLALGSGKRQRASASIAQPAPP 107
           LPK RQH S+K KA E MASKFLAL S KRQRASA    PA P
Sbjct: 195 LPKPRQHSSQKRKAPEEMASKFLALSSTKRQRASAPSIPPATP 237

[Close]

BLAST of Moc06g17170 vs. ExPASy TrEMBL
Match: A0A6J1DKS4 (caffeic acid 3-O-methyltransferase-like OS=Momordica charantia OX=3673 GN=LOC111021443 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 7.1e-27
Identity = 70/103 (67.96%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 4   FYDVALPSPIPRISSKSWEIIKRAQGRNLRYALWGEALVSNYHLFSSGLSLHDRPDKHNK 63
           F D     P+ RI +KSWEII+RAQGR+L+YALWGEALV N HLFSSGLS HD+PD+  K
Sbjct: 135 FLDSCPAIPVSRIDNKSWEIIRRAQGRSLKYALWGEALVLNSHLFSSGLSSHDQPDEFKK 194

Query: 64  LPKRRQHRSEKSKASEGMASKFLALGSGKRQRASASIAQPAPP 107
           LPK RQH S+K KA E MASKFLAL S KRQRASA    PA P
Sbjct: 195 LPKPRQHSSQKRKAPEEMASKFLALSSTKRQRASAPSIPPATP 237

The following BLAST results are available for this feature:

BLAST of Moc06g17170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154107.1	1.5e-26	67.96	caffeic acid 3-O-methyltransferase-like [Momordica charantia]	[more]

BLAST of Moc06g17170 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g17170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DKS4	7.1e-27	67.96	caffeic acid 3-O-methyltransferase-like OS=Momordica charantia OX=3673 GN=LOC111...	[more]

BLAST of Moc06g17170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 226..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 308..327
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..182
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g17170.1	Moc06g17170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016740	transferase activity