Moc06g17140 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g17140
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotran_gag_3 domain-containing protein
Locationchr6: 13426020 .. 13428726 (+)
RNA-Seq ExpressionMoc06g17140
SyntenyMoc06g17140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGCCATGGGTAACACACCCTGGACAAGCATGCCCACAACACCATGCACCATCTGGCCCTAAGAAATCAGAGACTCTCAAGATGATGGCAAGGGTGTTTAGAAAACCCAGTAACCCAAGCAACCTGGAAAACCCAAGCCAGACCACAAGGGTTGAGTTGAGTTCGAAGTTTTTTCAGTTTTGCTTTGGGTAGTTTTTTTCTAGAAGTGAGAATTCTGTTGGATTTGCGGTTTTGAAGGTTTTTTTGGTCAGTTCCAAGTTCAATTAAAAACTAAAAAATAAAAATTGAAAAACTATACAAATTATTAGCGTTTCTTTTTACTTATCTCCTTTTCTTCTCAGTCGCCTCCCTCCATCTTATTGAGAATTTGGAATACAAGACCTATTTGGTAATTTTTTTTTCTTATTTTTCGTTTCTAATTTTATTAAGAAATATAAGTATTTGACAACTATTTATATTTATATTTATTGTTTCTCATTTTTTTTATAAGCATTCTCAAAATTATATAGAAATTTTGGAAACAATAAAAACAAGTTTTTTTTTCTTGTTCTCGTTTCCAATTAATTTATTCCAAAAAAATAAATAAAAGCATAAAGACACTTTTGGTCCATGAGATTTAAGCTAGGTGTCTATTTTGTCCCTGAAGTTTCAAGGTAGACATTTTTAGTCCTTGAAGTTTGAAATAGATATCTATTTGGTCCTTAAAGTTTTAAAATGAACACTTTAGTCCTTGAAGTTTGAAAAATAATTCTAAATGATCATTGAGTTTACTTAGTTGACTAATGTTGAAATAACGTGGCGCTGATTTGACAAAATACATTAATTTTATAATATATTTTTTTATAACTAGACTTCTCTCATTTATTTATTTTTAAGAGAGATGTTGAGGATGACAATATTGAAATGGCTGGAGGAAAAGCTCCCATCTGTACCTCGACAGTCGGTGGTGGGCCTCGCCTGGAGATGAGGAAGGAGGAAGGAGGTGAAAAGGTAGTGATAATTTAAATAAAAAAATAATAAGCGAGAGAAGTCTAGTTATAAGAAAATATATTATTAAATTAACATATTTTTCCAAATTAACTCAATGACCATTTAAAATGATTTTTTAAACTCTAACAATTAAAGTGTTCATTTTAAAACTTTAGAGATCAAATAGACAACTATCTCAAACTTGGACTAAAAATATTACTTTGAAACTTCAGGAACCAAACAGACACCTAGCATAAACCTTAGGAACCAAAAGTGTACTTTTTTCTAAATAAAAACTATAGTAAAATACACTTTTAGTCCCTGAGTTTGAGGCTAAGTTTCTATTTGGTTCATAAGTTTAAAAAAGTGACAATTTAGTCCTTGACATTTAAGAAATTGTTCTAAAAGGTGTCCCTGAAGTCAAAATCACCCACAAAGCTAGTGTTGATGCGGCAACGTTGAGTTGACAAAATTTAAGTGATACGACAAACTTTAAAATCTTGAACCAAAACTCGCAAGTATAAAAACTCAACGGATAATCAAAATAGAACAATAACATCAGTTCTTTTTATTGATCAAATCGAATTCCTTCATAAAAAATTCACAGACGACGAAAATGAAACTGCTAGTTCTGATAGCAATCGTAAAATTTGTTAGCATAAATATTATAATTATTATTATTAGTCATTGAGGGTAAATTAATCTTTTCATATTTTTAGAGTTAGGGTTGATAACCCATATAAACATCTTATTGTGTAGTTCATAATCGATTTTTCCTTGATCAATAAAGTAATTCCTAATTTTCTCTCTACGATTTCATGGTATCAGAGCCTCCATTATCATTTAAATTTGAATCCGTTAGTTGATCGGGCAAGGAAGGCAATTTCATGTAAATTCAGTTTTTTGAAGATGTTGAATTTGCAGGCAATTTCGTGGAGAAATCGATTTCGAAATTCTCATTGTCGCAATCAGTATGTGTTTTGAGTTTTGGATTTTTTATTACATCGAGGAAGGATCAAGGTTTGGATTTTTATTGCATCGAAGAAGGGTCAGTCAACATAATTGTGAATTTTGGTGATATTTGCTTTGAAATTTGAAAGCTTAATTTGCTTTTGGATTGTTAGATTGATTTTGGAATCGTCTGGTATCCTTAATTTTTGTGCATTGTGGATTGAAAATTTACTTATTTTGGATTGGAAATTTACGATTCGGCGTAGTATTAGTCTTCGGCATAGTTCAACTCTTTTTTGTTTAGTGAAATTTGGTGGTAGTTTTGTTGGGTGAAATTGGGAATTGTTTCGATTTTGCCATTACGTCGAATCGTAAGGATGATTCTCTTCAATCGATTAGTATAGAATTAGATGGTAAAAATTATTCGTATTGGAGTTGTGTTATGAAAAATTTCTTGCATAGAAAATCTATGTGGAACTATGTTACGGGTAAGCGAGTTGAGCCTAAAGACACCAAGGCAAATGACTATGAATCCGCATTAGATACTTGGGAGTCTGACAATTTGAAGATCATCACATGGATAAATAATTCTGTTATGCACTCTATTGGTGCATAATTAGCAAAATATGATACTGTTAAACAGGTTTGGGACCATCTGGCCAAATTGTATACACAGTCTAATTTTGCCAAGCAGTATCAATTGGAGACGGATATTCGAGCATTACAGCAGAATGATATGAGTATTCAAGACTTCTACTCTTCCATGTCAGAATTATGGGATTAG

mRNA sequence

ATGCGGCCATGGGTAACACACCCTGGACAAGCATGCCCACAACACCATGCACCATCTGGCCCTAAGAAATCAGAGACTCTCAAGATGATGGCAAGGGTGTTTAGAAAACCCAGTAACCCAAGCAACCTGGAAAACCCAAGCCAGACCACAAGGGTTGAGTTGAGTTCGAAGTTTTTTCAGTTTTGCTTTGGAGATGTTGAGGATGACAATATTGAAATGGCTGGAGGAAAAGCTCCCATCTGTACCTCGACAGTCGGTGGTGGGCCTCGCCTGGAGATGAGGAAGGAGGAAGGAGGTGAAAAGGTTTGGGACCATCTGGCCAAATTGTATACACAGTCTAATTTTGCCAAGCAGTATCAATTGGAGACGGATATTCGAGCATTACAGCAGAATGATATGAGTATTCAAGACTTCTACTCTTCCATGTCAGAATTATGGGATTAG

Coding sequence (CDS)

ATGCGGCCATGGGTAACACACCCTGGACAAGCATGCCCACAACACCATGCACCATCTGGCCCTAAGAAATCAGAGACTCTCAAGATGATGGCAAGGGTGTTTAGAAAACCCAGTAACCCAAGCAACCTGGAAAACCCAAGCCAGACCACAAGGGTTGAGTTGAGTTCGAAGTTTTTTCAGTTTTGCTTTGGAGATGTTGAGGATGACAATATTGAAATGGCTGGAGGAAAAGCTCCCATCTGTACCTCGACAGTCGGTGGTGGGCCTCGCCTGGAGATGAGGAAGGAGGAAGGAGGTGAAAAGGTTTGGGACCATCTGGCCAAATTGTATACACAGTCTAATTTTGCCAAGCAGTATCAATTGGAGACGGATATTCGAGCATTACAGCAGAATGATATGAGTATTCAAGACTTCTACTCTTCCATGTCAGAATTATGGGATTAG

Protein sequence

MRPWVTHPGQACPQHHAPSGPKKSETLKMMARVFRKPSNPSNLENPSQTTRVELSSKFFQFCFGDVEDDNIEMAGGKAPICTSTVGGGPRLEMRKEEGGEKVWDHLAKLYTQSNFAKQYQLETDIRALQQNDMSIQDFYSSMSELWD
Homology
[Close]
BLAST of Moc06g17140 vs. NCBI nr
Match: KZV56542.1 (hypothetical protein F511_16141, partial [Dorcoceras hygrometricum])

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-16
Identity = 44/57 (77.19%), Postives = 52/57 (91.23%), Query Frame = 0 

Query: 91  LEMRKEEGGEKVWDHLAKLYTQSNFAKQYQLETDIRALQQNDMSIQDFYSSMSELWD 148
           +++ K E  ++VWDHLA+LYTQSNFAKQYQLETDIRALQQNDMSIQ+FYS+MS LWD
Sbjct: 82  IQLAKYETAKEVWDHLARLYTQSNFAKQYQLETDIRALQQNDMSIQEFYSAMSNLWD 138

[Close]
BLAST of Moc06g17140 vs. NCBI nr
Match: PWA56951.1 (gag-pol polyprotein [Artemisia annua])

HSP 1 Score: 95.1 bits (235), Expect = 5.3e-16
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 0 

Query: 92  EMRKEEGGEKVWDHLAKLYTQSNFAKQYQLETDIRALQQNDMSIQDFYSSMSELWD 148
           ++ K +  + VWDHLA+LYTQSNFAKQYQLETDIR+LQQNDMSIQDFYSSMS LWD
Sbjct: 86  QLAKYDSAKAVWDHLARLYTQSNFAKQYQLETDIRSLQQNDMSIQDFYSSMSTLWD 141

[Close]
BLAST of Moc06g17140 vs. NCBI nr
Match: PWA71849.1 (hypothetical protein CTI12_AA263730 [Artemisia annua])

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-15
Identity = 45/57 (78.95%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 91  LEMRKEEGGEKVWDHLAKLYTQSNFAKQYQLETDIRALQQNDMSIQDFYSSMSELWD 148
           L++ K E  + VWDHLAKLYTQSNFAKQYQLE DIRALQQND SIQ+FYSSMS LWD
Sbjct: 48  LQLAKYETAKAVWDHLAKLYTQSNFAKQYQLEMDIRALQQNDKSIQEFYSSMSALWD 104

[Close]
BLAST of Moc06g17140 vs. NCBI nr
Match: KAG6505608.1 (hypothetical protein ZIOFF_037973 [Zingiber officinale])

HSP 1 Score: 91.3 bits (225), Expect = 7.6e-15
Identity = 42/56 (75.00%), Postives = 49/56 (87.50%), Query Frame = 0 

Query: 92  EMRKEEGGEKVWDHLAKLYTQSNFAKQYQLETDIRALQQNDMSIQDFYSSMSELWD 148
           ++ K E  ++VWDHLA+LYTQSNFAKQYQLE DIRAL+Q DM IQDFYS+MSELWD
Sbjct: 85  QLAKYETAKEVWDHLARLYTQSNFAKQYQLEADIRALRQQDMGIQDFYSAMSELWD 140

[Close]
BLAST of Moc06g17140 vs. NCBI nr
Match: PWA94093.1 (hypothetical protein CTI12_AA063150 [Artemisia annua])

HSP 1 Score: 91.3 bits (225), Expect = 7.6e-15
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 91  LEMRKEEGGEKVWDHLAKLYTQSNFAKQYQLETDIRALQQNDMSIQDFYSSMSELWD 148
           L++ K E  + VWD+LAKLYTQSNFAKQYQLETDIRALQ ND SIQ+FYSSMS LWD
Sbjct: 57  LQLAKYETAKAVWDNLAKLYTQSNFAKQYQLETDIRALQHNDTSIQEFYSSMSALWD 113

[Close]
BLAST of Moc06g17140 vs. ExPASy TrEMBL
Match: A0A2Z7DAC1 (Retrotran_gag_3 domain-containing protein (Fragment) OS=Dorcoceras hygrometricum OX=472368 GN=F511_16141 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.1e-16
Identity = 44/57 (77.19%), Postives = 52/57 (91.23%), Query Frame = 0 

Query: 91  LEMRKEEGGEKVWDHLAKLYTQSNFAKQYQLETDIRALQQNDMSIQDFYSSMSELWD 148
           +++ K E  ++VWDHLA+LYTQSNFAKQYQLETDIRALQQNDMSIQ+FYS+MS LWD
Sbjct: 82  IQLAKYETAKEVWDHLARLYTQSNFAKQYQLETDIRALQQNDMSIQEFYSAMSNLWD 138

[Close]
BLAST of Moc06g17140 vs. ExPASy TrEMBL
Match: A0A2U1M6T2 (Gag-pol polyprotein OS=Artemisia annua OX=35608 GN=CTI12_AA414020 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.6e-16
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 0 

Query: 92  EMRKEEGGEKVWDHLAKLYTQSNFAKQYQLETDIRALQQNDMSIQDFYSSMSELWD 148
           ++ K +  + VWDHLA+LYTQSNFAKQYQLETDIR+LQQNDMSIQDFYSSMS LWD
Sbjct: 86  QLAKYDSAKAVWDHLARLYTQSNFAKQYQLETDIRSLQQNDMSIQDFYSSMSTLWD 141

[Close]
BLAST of Moc06g17140 vs. ExPASy TrEMBL
Match: A0A2U1NEB9 (CCHC-type domain-containing protein OS=Artemisia annua OX=35608 GN=CTI12_AA263730 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 7.4e-16
Identity = 45/57 (78.95%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 91  LEMRKEEGGEKVWDHLAKLYTQSNFAKQYQLETDIRALQQNDMSIQDFYSSMSELWD 148
           L++ K E  + VWDHLAKLYTQSNFAKQYQLE DIRALQQND SIQ+FYSSMS LWD
Sbjct: 48  LQLAKYETAKAVWDHLAKLYTQSNFAKQYQLEMDIRALQQNDKSIQEFYSSMSALWD 104

[Close]
BLAST of Moc06g17140 vs. ExPASy TrEMBL
Match: A0A2U1Q7Z6 (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA063150 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.7e-15
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 91  LEMRKEEGGEKVWDHLAKLYTQSNFAKQYQLETDIRALQQNDMSIQDFYSSMSELWD 148
           L++ K E  + VWD+LAKLYTQSNFAKQYQLETDIRALQ ND SIQ+FYSSMS LWD
Sbjct: 57  LQLAKYETAKAVWDNLAKLYTQSNFAKQYQLETDIRALQHNDTSIQEFYSSMSALWD 113

[Close]
BLAST of Moc06g17140 vs. ExPASy TrEMBL
Match: A0A699HEW9 (Gag-Pol polyprotein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_374004 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 91  LEMRKEEGGEKVWDHLAKLYTQSNFAKQYQLETDIRALQQNDMSIQDFYSSMSELWD 148
           L++ K E  + VWDHLAKLYTQSNFAKQ QLETDIR LQQND SI DFYSSM+ LWD
Sbjct: 38  LQLAKYETAKAVWDHLAKLYTQSNFAKQCQLETDIRTLQQNDSSIHDFYSSMATLWD 94

The following BLAST results are available for this feature:
BLAST of Moc06g17140 vs. NCBI nr
Match NameE-valueIdentityDescription
KZV56542.12.4e-1677.19hypothetical protein F511_16141, partial [Dorcoceras hygrometricum][more]
PWA56951.15.3e-1678.57gag-pol polyprotein [Artemisia annua][more]
PWA71849.11.5e-1578.95hypothetical protein CTI12_AA263730 [Artemisia annua][more]
KAG6505608.17.6e-1575.00hypothetical protein ZIOFF_037973 [Zingiber officinale][more]
PWA94093.17.6e-1577.19hypothetical protein CTI12_AA063150 [Artemisia annua][more]
BLAST of Moc06g17140 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc06g17140 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2Z7DAC11.1e-1677.19Retrotran_gag_3 domain-containing protein (Fragment) OS=Dorcoceras hygrometricum... [more]
A0A2U1M6T22.6e-1678.57Gag-pol polyprotein OS=Artemisia annua OX=35608 GN=CTI12_AA414020 PE=4 SV=1[more]
A0A2U1NEB97.4e-1678.95CCHC-type domain-containing protein OS=Artemisia annua OX=35608 GN=CTI12_AA26373... [more]
A0A2U1Q7Z63.7e-1577.19Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA063150 PE=4 SV=1[more]
A0A699HEW91.4e-1475.44Gag-Pol polyprotein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_374004 PE=4 SV... [more]
BLAST of Moc06g17140 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 100..147
e-value: 2.1E-6
score: 27.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g17140.1Moc06g17140.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0008270 zinc ion binding