Moc06g16670 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g16670
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Location	chr6: 13108743 .. 13115548 (-)
RNA-Seq Expression	Moc06g16670
Synteny	Moc06g16670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCGCCATGGCGCCGTGCCTAGGCGCTATGGCACTGCTGCTGTGGCTTTTTGCTGCAACAGTGTCGTGGCGCTGCCCTTAGGCCCCGAGGCGCTGTCCCGGGTGTTTTTCGGCGTGCTTTCGTGGCTCCGGTTCGCGGTTCGAGGGCGGTTGCAGTCGTTTTCTTTTTTTTTTTTGTATTATTTTGCCTTCTTAGGGTGCCAAAAACCGGTCCAACTTTTGCTATTTAATTATTTTATGCATTATGAATGTATATTTTAATTAAAAGTATATTGCATATTATATGCCATATAGTTTTAAAATCCCACCATAGGTTACATGCATAATATGTATGTTTGATATATAGTATGTATGTATTATCATACATCATATAGTTATAAATGTTATAATGTACGAATGCATGTCATTACTTTCATTAATATAATTGTTATATTGATGTATGCTTACAATGCATGATTATAGTTTTAATTTCTTAAATTTTATAAGAGTTATAAAATGTGGTAGATCGAAATTAAAATCTATAATAAAGAATTGCATGCAAATATAGGGTCTAAGTTAATTAATTTTATAGGGGTTTAAAATTAATTAGACTTTAAGTTATATCTTCTAATATGATTAGTGGGTAGTCTTTTATTTTGTTTTAACTAGGTTTAAAATGAAATGATAAAAGGCTAAATATATAGTATTGCCTATAAGGGAACCCTGTCTAAGGAAGGTTCTGTCTAGGTTGAGATACTTAAGCTGACCGTAAGGGAACACCTCTACCTGGGAACCGACCTAGGGGTTGAATTAGTCAATATTTTATTTACATGCATTAACGTCGTTGGTTTATTAAAATGTTTAATGAACTAAAACATTTATGTACAACTACCAATATAATAATTATATTGGACCGACTAAAAATTCACTTAGTTAATTTCACTTAGTCGGGATTTATCTAAGTAATATATCATAGTCTTAGAATACTAAGTGGGAGCAAAAGAGAATATGTAATATACAGTGTATATATTTGATATACAAAGTATATATAACATACTTCTCTCTCACGTTCTCCTTTATATTCACACTGTGAGTTCCATGCTCGGCCTCGTGTCGCCCTGGGCGCAGCCTCCTTACGGAAGGTGTTTGCATTGTTCAATATCGAGGTGAATGGAGATAGTATCCATAGTAAGTGGGAGAAGGATGTGTGACAACACATCCTGCGGTCTCCATCATTGGTTTGCACCATGAGGTTTCATACATTGCCTGCGTGTTGTCCTGGAGTGACCATCCCTACGGAGGGTTCATTGTATGGAATAAAAACCAAGGCAAACTCCAAAAATGGATAGGGGTCTTTCAGGTTTTGCGCCAATATTTTTCTTCCCTACGGCAAGATTATTGGAGTGGACCTCTGAGGTCCGAAAATGATGGGTCACACTTACGGGGAGTTGTTAAGTTAGTTAGCAATTTCTTGACCAAATAAACAATGACTAAAGTTTATAGGAATAAGAGTTATTCAGGTGTAAAATTTAGTTGAGAACGTCTATATTCAGTGAAGGAGTACCTGTCTGTCCTACGGTGGCTGTTGCTCTAAATCACTGAAGCGTCATTGCAAAACAATTTTGTTAGGGTGCTTAATTACTTTTGCTAAAATTTGATTGGGTTCAAAGGTTAATGCATGAAACTAATATAGGTTTGTTTTTACTTCAGCATGTCTACTTCCATTATTGCACTCCTAGCCGCTCAAAAACTGAACGGCGAGAATTACAAACAATGGAAATCGAATCTAAACACTATTCTCGTGATAGATGATCTTAGCTTCGTCTTGCAAGAGGATTGTCCTCAAGCTCCTGTGCCTAACGCCACTGTGGCGTTGCGCAACGTCTATGACAGATGGATCAAGGCCAATGACAAGGCCAAGGTCTACATCTTGGCGGGCATATCTGATGTGTTTGCTAAGAAGCACGAGGACACGGTCACTGCTAAGGAGATTATAGACTCGCTGCAGAGCATGTTTGGACAACTGTCCTCACAGGCTCGACATGAAGCCCTTAAGTTCATCTACAACTCCCGCATGAAGGAGGGCTCATCACTGCGAGAACAAGTTCTCAACCTGATGGTTTACTTCAACGTTGCAGAGTCGAACGGGGCTGTCATAGACGAGCAGAGTCAGATCAGCTTCATTCTGGAATCTCTTCCGAAGAGTTTCCTTCCATTCTACAGTAATGCGGTTATGAATAAGCTGGAGTACACTCTTACCACACTCTTAAACGAGCTGCAGACCTACAAGTCTCTTATGAAGAGTAAGGGACAAGAAGGGTAGGCAAATGTTGCCACCTCAAAGAGGTTCAACCGAGGTTCGTCCTCTGAAACCAAGTATGCGCCCTCTTCTTCTGGAAGTACAACTTTCAAGAAGAAGAAGGCTGCTGGTAAGGGGTCTAAACCTCACTCCGTTGCTGCTGCTGCCAAGACAGGCAAAGCCAAGGTTGCAGAGAAAGGAAAGTGTTTCCACTGCAATATGGATGGGCATTGGAAGCGCAACTGCCCAAAATACTTGGCCAAAAAGAAGAAAGTCAACGAAGGTAAATATGATTTATTTGTTTTGGAAACATGTTTAGTGGAGAACGATGACTCCGCCTGGATACTTGATTCAAGAGTCACTAATCACGTTTGTGCTTCATTTCAGGGAATTAGTTTCTGGACGCAGCTTGACGACGGAGGGATGACTCTCAAGGTCGGAACGGGAGAGGTCATCTCAGCTGTGGCGGTAGGGGAGCTCAAGTTGTTTACAAATAAGAATATGTATATATTATTAGATCATGTGTACGTAGTTCCTAAAATTAAAAGGAACTTAATTTCAGTTTCTTGTTTGTTAGAACATTTGTATTCCATTTCATTTAATTTGAATGAAGCGTTCGTTTCAAGAAATAGTGTTAATATTTGTTCTGCTTTGCTTGAAAACAACTTGTATGTGCTAAGACCAACCATAACTAAAATAGTTTTAAATACCGAGTAGTTTAAAAATGCTAGAACTCAAAATAAAAGGCAAAAAGTTTCTCAAAAAGAAAATACATATCTTTGGCACTTAAGATTAGGTCACGTTAATCTCAATAGGATTTGGAGGTTGGTAAAGAATGGCATTCTAAGTGAGTTAAAAGACGATTCTTTGCCACCATGTGAATCTTGTCTTGAAGGCAAAATGACTAAAAGACCTTTTACTAGAAAAGGTTATCGAGCCAAAGAGCCCTTAAATCTTATACATTCAGACCTTTGTGGTCCGATGAATGTTAAAGCTCGAGGAGGGTATGAATACTTCATCTCTTTTATAGATGATTATTCAAAGTATGATTATTTATACCTAATCCAACATAAGTCTGAAGCCCTTGAAAAGTTCAAGGAGTACAGGACTGAAGTTGAAAATCAATTAGGTAAGACCATTAAAACACTTCGATCAGATCGGGGTGGAGAGTATATGGACTTGAGATTCCAGGACTATATGATAGAATATGGAATCACGTCCCAACTCTCAGCCCCTGGTACACCTCAACAAAACGGTGTATCAGAAAGGAGAAACAAAACCCTGTTGGACATGGTTCGATCAATGATGAGCTATGCTCAGTTGCCTAACTCGTTTTTGGGTTACGCAATGGAGACTGGGGTTTACATTTTGAACGTAGTTCCATCAAAGAGTGTTTCTGAAACACCCTTTGAGCTATGGAAGGGTCGTAAAGCTGGTTTACGTCACTTTCGCATTTGAGGATACCCGACACACGTGCTCATGACTAACCCAAAGCAACTGGAACCTCGTTCAAAAGTATGCCTATTCGTAGGTTACCCTAAAGAGACGAGAGGTGGTCTATTCTTCGATCCTCAAGAAAACAGAGTGTTTGTATCGACAAATGCCACTTTCTTGGAAGAAGACCACGTTCGAGATCATAAACCACGGAGTAAGGTAGTGATTAACGAGATTTCCGAAGAGGCCATAAACACGTCAATAAGAGTTGTTGATCAAACTGGCACTACAACAAGAGTTGTTGATGAAGCCAGTACATCACGTCAGTCACATCCACCTCAAGTATTTAGGGTGCCTCGACGTAGTGGGAGGATTGTGCCACAACCTGACCGCTACGTGCGTTTAACTGAAACCCAAGTTGTCATACCTGAGGACGGCGTCAAGGATCCATTGACCTACAAAAACGCAATGGAAGATACTGTTAGGGTTGACTTTTTACTGCAGAAACATGTGTCGGTAGCCCTGTTTGACCACATTTTTGACCCATTTCCCATTATTATTTGTCAAAAAGGACCACATATTCTTAAAGTAGAACATGCATAGATTATTTCTGCATAAAAGTCAAACTATCGTACTTTATGAAAAATATGAGATAAATGCAATCAAAGATGGAAGAAAATAACAGAATTCTGTTTTTTGAAGAATTGCGTCCGACGCATTTTTTGAGGGGAATTTATCAAAACGCACGTTTTGATTAATGAAGGGCAAGGAGGACATTTTCCACATGTTCAAAACCGTGAGTCCAAGTCCAAGTGAGGTGGTTAAGTGAATCTCAACCCTTTTCCACCTAAAATTGAGGGGAGTTTCAACCAACCTATGGTGCTATAAAAGGAAGTCATCCATCCCTCAGCAAATCATCCCTTCCAAGCTTCATTTCATATTCTTTTAGATGCTCTCTCGTTGTAGAACAGGTTTTTAGCGTTTATGTTCATGTTCTAGTTGTTCATTTCTTCGTTTTTCACACTTTTACCTTTCGTAGTGCTTTTAATTCGAGTTCTTACTTTCGTTCTTTGTTCATTCTGTTATTCTAAAGTTCTTTAACGAGTTTCAACTCCCCTCGCGCTCGAGAGAGAAGAGGGTCAAGCTAAAACTCCTTATACGGCTTATTTATTCATTTAAATTCAATGAAAAATAATTTCTTATTGTTTTCGTGCATTTACTTTCATTTAATTATGTTCTAAATTAGTTATCAACCTCTTTGTGGAATGCCTTAGTCAAATGATTTGATTTTCAACACGCTCGGGATTTTTGCCAGATTGCGCCTGGCACTTTTTTGGGTTGGTTTCTAAAAACTTCTCTTTATGTCTTTTTTCCATTTGGCCAGTGGGAACTTGATTTATACACCAAAGCCCAACCTTGGGAAAGGTGAGTTAGGTAAAATAATAGGAAACCAATATGGGATGTGACTTAGGAATAAGCGCATAAAACATGGTCCTAGGCATAGACCCTGTGACCCATAATGCAAATGAGTTGGTAGATATTCTCTAGGATTGTAATCACACATAGGAATACGATTGTAGGTTACCCTAGCCTATGTAGCAACCAAAAGCGGTAGTGAAAGAGTAGAACTCAAATCCGAAGAAAAGCCAGGAATTGCGCCTGGTGCATTTTCCCAACATAGTGTGTTTTCCATATTTTGCATCAAACCTAAGGTAGGAGACAAGGAGGTTGAGTTTTATTAAATTGCTTGTTAGTTAAAACCCCAAACAACAACATTTCATTACATATTTCTTCTTAAATCACAATTGCATATTTGAACCGTTCACTTCTTAAAAATTGTTTTGAAAAGCAACAAGTCCTTGAGGCTTCGACCTTGGATTACTTTCGAGTATTACTTGTGACCGTATGCGCTTGCACGAGTCTCTAATCTTTTTAAAGGTAGAGAAAGTCCCAACAAGTTTTTGGCGTCGTTGCCGGGGACTTAAGTTTTCAAATCATATTCTTTTCAAGTGAATTGTTTCATTGTGTGATTGTTGCATACCTCTGTGGACTTAATTGTTATATCTAATCTTTAAGGGAGTTGTGTATGAGCATAGGGTCTGGTTGGTTGACCTTTGATCCAGATATTGAAAGACCACTTAAGAGGAGAAGGCGTGAGCAGAGGTTGAGAAAAGAGAAAGAAAGTAAAAAAGAGAAAGAAGTTGAAGAAGAAGAGACCATCGAGATGAATAGAAATCTACAAGATCCTCCACTGCCACAAAATCCACCTGTGAATGGAGATGTGGCAAGTGAAGGAGCAGCAAACCGAGCAGGAGAAATTCCTAATTCGATCCATCTAGCAGATAATCGAGATGTAGCCATGCGGAATTATGTCACTCATGCGTTCCATAACCTAAATTCAGGGATAAATAATCCTTTACCCCAAGCCGCACAGTTCGAGCTCAAGCCAGTCATGTTCTAGATGTTACAGACGATGGGCCAATTCGGAGGATTGACTAACGAAGATCCTTACTCCCATCTCAAATCCTTTATTGAAATAGCTAATTCATTTCAACTTCCTGATGTCTCTGAGGATGCACTAAGATTAAAAATGTTTCCTTTTTCTCTTAGGGATGGTGCAAGGACTTGGCTAAACGCGTTAGAACCCAATTCTATCAACACATGGATGGAACTGACGGAGAAATTTTTGGTAAAGTACCATACTTTGACCAGGAACACAGACCTTCGAGAGGACATTGTGTCTTTTAGACAGAAGGAGAACGAAGCAGTTCAAGAAGCTTGGGAGCGTTTGAAGGAGTTACTTAGAAGATGTATGAGCCATGGATTGCCCGCATGTGTGCAGATTGAACAATTCTATAGAGGATTGGATCGTTCATCAAGGATGATGTTGAACACTGCAACCAATGGCTTGTTGTTAGAGAAGTCGGTAAATGAGATCGTTGATATCTTGAATAAGATGACAGACATTAATGACCAAAGCGAAATAGGAAGGTCATTACCAAAGAAGAAAGTATTAGTTGGAGTCTTTGAGTTAGACACAGTAGCTTCAATGCAAGCCCAAATGGCAGCTATGAACCAAATGATAAAGTAG

mRNA sequence

ATGCAGCGCCATGGCGCCGTGCCTAGGCGCTATGGCACTGCTGCTGTGGCTTTTTGCTGCAACAGTGTCGTGGCGCTGCCCTTAGGCCCCGAGGCGCTGTCCCGGGTGTTTTTCGGCGTGCTTTCGTGGCTCCGCATGTCTACTTCCATTATTGCACTCCTAGCCGCTCAAAAACTGAACGGCGAGAATTACAAACAATGGAAATCGAATCTAAACACTATTCTCGTGATAGATGATCTTAGCTTCGTCTTGCAAGAGGATTGTCCTCAAGCTCCTGTGCCTAACGCCACTGTGGCGTTGCGCAACGTCTATGACAGATGGATCAAGGCCAATGACAAGGCCAAGGTCTACATCTTGGCGGGCATATCTGATGTGTTTGCTAAGAAGCACGAGGACACGGTCACTGCTAAGGAGATTATAGACTCGCTGCAGAGCATGTTTGGACAACTGTCCTCACAGGCTCGACATGAAGCCCTTAAGTTCATCTACAACTCCCGCATGAAGGAGGGCTCATCACTGCGAGAACAAGTTCTCAACCTGATGGTTTACTTCAACGTTGCAGAGTCGAACGGGGCTGTCATAGACGAGCAGAGTCAGATCAGCTTCATTCTGGAATCTCTTCCGAAGAGTTTCCTTCCATTCTACAGTAATGCGGTTATGAATAAGCTGGAGTACACTCTTACCACACTCTTAAACGAGCTGCAGACCTACAAGTCTCTTATGAAGAGTAAGGGACAAGAAGGTACAACTTTCAAGAAGAAGAAGGCTGCTGGTAAGGGGTCTAAACCTCACTCCGTTGCTGCTGCTGCCAAGACAGGCAAAGCCAAGGTTGCAGAGAAAGGAAAGTGTTTCCACTGCAATATGGATGGGCATTGGAAGCGCAACTGCCCAAAATACTTGGCCAAAAAGAAGAAAGTCAACGAAGGTAAATATGATTTATTTGTTTTGGAAACATGTTTAGTGGAGAACGATGACTCCGCCTGGATACTTGATTCAAGAGTCACTAATCACGTTTGTGCTTCATTTCAGGGAATTAGTTTCTGGACGCAGCTTGACGACGGAGGGATGACTCTCAAGGTCGGAACGGGAGAGGTCATCTCAGCTGTGGCGGTAGTGATTAACGAGATTTCCGAAGAGGCCATAAACACGTCAATAAGAGTTGTTGATCAAACTGGCACTACAACAAGAGTTGTTGATGAAGCCAGTACATCACGTCAGTCACATCCACCTCAAGTATTTAGGGTGCCTCGACGTAGTGGGAGGATTGTGCCACAACCTGACCGCTACGTGCGTTTAACTGAAACCCAAGTTGTCATACCTGAGGACGGCGTCAAGGATCCATTGACCTACAAAAACGCAATGGAAGATACTGTTACCCTAGCCTATGTAGCAACCAAAAGCGGTAGTGAAAGAGTAGAACTCAAATCCGAAGAAAAGCCAGGAATTGCGCCTGGGTCTGGTTGGTTGACCTTTGATCCAGATATTGAAAGACCACTTAAGAGGAGAAGGCGTGAGCAGAGGTTGAGAAAAGAGAAAGAAAGTAAAAAAGAGAAAGAAGTTGAAGAAGAAGAGACCATCGAGATGAATAGAAATCTACAAGATCCTCCACTGCCACAAAATCCACCTGTGAATGGAGATGTGGCAAGTGAAGGAGCAGCAAACCGAGCAGGAGAAATTCCTAATTCGATCCATCTAGCAGATAATCGAGATGTAGCCATGCGGAATTATGTCACTCATGCGTTCCATAACCTAAATTCAGGGATAAATAATCCTTTACCCCAAGCCGCACAGTTCGAGCTCAAGCCAGTCATGGATGGTGCAAGGACTTGGCTAAACGCGTTAGAACCCAATTCTATCAACACATGGATGGAACTGACGGAGAAATTTTTGGTAAAGTACCATACTTTGACCAGGAACACAGACCTTCGAGAGGACATTGTGTCTTTTAGACAGAAGGAGAACGAAGCAGTTCAAGAAGCTTGGGAGCGTTTGAAGGAGTTACTTAGAAGATGTATGAGCCATGGATTGCCCGCATGTGTGCAGATTGAACAATTCTATAGAGGATTGGATCGTTCATCAAGGATGATGTTGAACACTGCAACCAATGGCTTGTTGTTAGAGAAGTCGGTAAATGAGATCGTTGATATCTTGAATAAGATGACAGACATTAATGACCAAAGCGAAATAGGAAGGTCATTACCAAAGAAGAAAGTATTAGTTGGAGTCTTTGAGTTAGACACAGTAGCTTCAATGCAAGCCCAAATGGCAGCTATGAACCAAATGATAAAGTAG

Coding sequence (CDS)

ATGCAGCGCCATGGCGCCGTGCCTAGGCGCTATGGCACTGCTGCTGTGGCTTTTTGCTGCAACAGTGTCGTGGCGCTGCCCTTAGGCCCCGAGGCGCTGTCCCGGGTGTTTTTCGGCGTGCTTTCGTGGCTCCGCATGTCTACTTCCATTATTGCACTCCTAGCCGCTCAAAAACTGAACGGCGAGAATTACAAACAATGGAAATCGAATCTAAACACTATTCTCGTGATAGATGATCTTAGCTTCGTCTTGCAAGAGGATTGTCCTCAAGCTCCTGTGCCTAACGCCACTGTGGCGTTGCGCAACGTCTATGACAGATGGATCAAGGCCAATGACAAGGCCAAGGTCTACATCTTGGCGGGCATATCTGATGTGTTTGCTAAGAAGCACGAGGACACGGTCACTGCTAAGGAGATTATAGACTCGCTGCAGAGCATGTTTGGACAACTGTCCTCACAGGCTCGACATGAAGCCCTTAAGTTCATCTACAACTCCCGCATGAAGGAGGGCTCATCACTGCGAGAACAAGTTCTCAACCTGATGGTTTACTTCAACGTTGCAGAGTCGAACGGGGCTGTCATAGACGAGCAGAGTCAGATCAGCTTCATTCTGGAATCTCTTCCGAAGAGTTTCCTTCCATTCTACAGTAATGCGGTTATGAATAAGCTGGAGTACACTCTTACCACACTCTTAAACGAGCTGCAGACCTACAAGTCTCTTATGAAGAGTAAGGGACAAGAAGGTACAACTTTCAAGAAGAAGAAGGCTGCTGGTAAGGGGTCTAAACCTCACTCCGTTGCTGCTGCTGCCAAGACAGGCAAAGCCAAGGTTGCAGAGAAAGGAAAGTGTTTCCACTGCAATATGGATGGGCATTGGAAGCGCAACTGCCCAAAATACTTGGCCAAAAAGAAGAAAGTCAACGAAGGTAAATATGATTTATTTGTTTTGGAAACATGTTTAGTGGAGAACGATGACTCCGCCTGGATACTTGATTCAAGAGTCACTAATCACGTTTGTGCTTCATTTCAGGGAATTAGTTTCTGGACGCAGCTTGACGACGGAGGGATGACTCTCAAGGTCGGAACGGGAGAGGTCATCTCAGCTGTGGCGGTAGTGATTAACGAGATTTCCGAAGAGGCCATAAACACGTCAATAAGAGTTGTTGATCAAACTGGCACTACAACAAGAGTTGTTGATGAAGCCAGTACATCACGTCAGTCACATCCACCTCAAGTATTTAGGGTGCCTCGACGTAGTGGGAGGATTGTGCCACAACCTGACCGCTACGTGCGTTTAACTGAAACCCAAGTTGTCATACCTGAGGACGGCGTCAAGGATCCATTGACCTACAAAAACGCAATGGAAGATACTGTTACCCTAGCCTATGTAGCAACCAAAAGCGGTAGTGAAAGAGTAGAACTCAAATCCGAAGAAAAGCCAGGAATTGCGCCTGGGTCTGGTTGGTTGACCTTTGATCCAGATATTGAAAGACCACTTAAGAGGAGAAGGCGTGAGCAGAGGTTGAGAAAAGAGAAAGAAAGTAAAAAAGAGAAAGAAGTTGAAGAAGAAGAGACCATCGAGATGAATAGAAATCTACAAGATCCTCCACTGCCACAAAATCCACCTGTGAATGGAGATGTGGCAAGTGAAGGAGCAGCAAACCGAGCAGGAGAAATTCCTAATTCGATCCATCTAGCAGATAATCGAGATGTAGCCATGCGGAATTATGTCACTCATGCGTTCCATAACCTAAATTCAGGGATAAATAATCCTTTACCCCAAGCCGCACAGTTCGAGCTCAAGCCAGTCATGGATGGTGCAAGGACTTGGCTAAACGCGTTAGAACCCAATTCTATCAACACATGGATGGAACTGACGGAGAAATTTTTGGTAAAGTACCATACTTTGACCAGGAACACAGACCTTCGAGAGGACATTGTGTCTTTTAGACAGAAGGAGAACGAAGCAGTTCAAGAAGCTTGGGAGCGTTTGAAGGAGTTACTTAGAAGATGTATGAGCCATGGATTGCCCGCATGTGTGCAGATTGAACAATTCTATAGAGGATTGGATCGTTCATCAAGGATGATGTTGAACACTGCAACCAATGGCTTGTTGTTAGAGAAGTCGGTAAATGAGATCGTTGATATCTTGAATAAGATGACAGACATTAATGACCAAAGCGAAATAGGAAGGTCATTACCAAAGAAGAAAGTATTAGTTGGAGTCTTTGAGTTAGACACAGTAGCTTCAATGCAAGCCCAAATGGCAGCTATGAACCAAATGATAAAGTAG

Protein sequence

MQRHGAVPRRYGTAAVAFCCNSVVALPLGPEALSRVFFGVLSWLRMSTSIIALLAAQKLNGENYKQWKSNLNTILVIDDLSFVLQEDCPQAPVPNATVALRNVYDRWIKANDKAKVYILAGISDVFAKKHEDTVTAKEIIDSLQSMFGQLSSQARHEALKFIYNSRMKEGSSLREQVLNLMVYFNVAESNGAVIDEQSQISFILESLPKSFLPFYSNAVMNKLEYTLTTLLNELQTYKSLMKSKGQEGTTFKKKKAAGKGSKPHSVAAAAKTGKAKVAEKGKCFHCNMDGHWKRNCPKYLAKKKKVNEGKYDLFVLETCLVENDDSAWILDSRVTNHVCASFQGISFWTQLDDGGMTLKVGTGEVISAVAVVINEISEEAINTSIRVVDQTGTTTRVVDEASTSRQSHPPQVFRVPRRSGRIVPQPDRYVRLTETQVVIPEDGVKDPLTYKNAMEDTVTLAYVATKSGSERVELKSEEKPGIAPGSGWLTFDPDIERPLKRRRREQRLRKEKESKKEKEVEEEETIEMNRNLQDPPLPQNPPVNGDVASEGAANRAGEIPNSIHLADNRDVAMRNYVTHAFHNLNSGINNPLPQAAQFELKPVMDGARTWLNALEPNSINTWMELTEKFLVKYHTLTRNTDLREDIVSFRQKENEAVQEAWERLKELLRRCMSHGLPACVQIEQFYRGLDRSSRMMLNTATNGLLLEKSVNEIVDILNKMTDINDQSEIGRSLPKKKVLVGVFELDTVASMQAQMAAMNQMIK

Homology

[Close]

BLAST of Moc06g16670 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 433.3 bits (1113), Expect = 4.2e-117
Identity = 221/353 (62.61%), Postives = 268/353 (75.92%), Query Frame = 0


Query: 46  MSTSIIALLAAQKLNGENYKQWKSNLNTILVIDDLSFVLQEDCPQAPVPNATVALRNVYD 105
           M+++ + +LAA KLNG NY  WK+ +NT+L+IDDL FVL E+CPQ P  NAT  +R  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 106 RWIKANDKAKVYILAGISDVFAKKHEDTVTAKEIIDSLQSMFGQLSSQARHEALKFIYNS 165
           RW KAN+KA+ YILA +S+V AKKHE  +TA+EI+DSLQ MFGQ S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 166 RMKEGSSLREQVLNLMVYFNVAESNGAVIDEQSQISFILESLPKSFLPFYSNAVMNKLEY 225
           RM EG+S+RE VLN+MV+FNVAE NGAVIDE SQ+SFILESLP+SFL F SNAVMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 226 TLTTLLNELQTYKSLMKSKGQEG------TTFK---------------------KKKAAG 285
           TLTTLLNELQT++SLMK KGQ+G      +T K                     KKK  G
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 286 KGSKPHSVAAAAKTGKAKVAEKGKCFHCNMDGHWKRNCPKYLAKKKKVNEGKYDLFVLET 345
           +G+K +   AAAKT K   A KG CFHCN +GHWKRNCPKYLA+KKK  +GKYDL VLET
Sbjct: 241 QGNKAN--LAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 346 CLVENDDSAWILDSRVTNHVCASFQGISFWTQLDDGGMTLKVGTGEVISAVAV 372
           CLVENDDSAWI+DS  TNHVC+SFQGIS W QL+ G MT++VGTG V+SA+AV
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWQQLETGEMTMRVGTGHVVSAIAV 351

[Close]

BLAST of Moc06g16670 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 433.3 bits (1113), Expect = 4.2e-117
Identity = 221/353 (62.61%), Postives = 268/353 (75.92%), Query Frame = 0


Query: 46  MSTSIIALLAAQKLNGENYKQWKSNLNTILVIDDLSFVLQEDCPQAPVPNATVALRNVYD 105
           M+++ + +LAA KLNG NY  WK+ +NT+L+IDDL FVL E+CPQ P  NAT  +R  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 106 RWIKANDKAKVYILAGISDVFAKKHEDTVTAKEIIDSLQSMFGQLSSQARHEALKFIYNS 165
           RW KAN+KA+ YILA +S+V AKKHE  +TA+EI+DSLQ MFGQ S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 166 RMKEGSSLREQVLNLMVYFNVAESNGAVIDEQSQISFILESLPKSFLPFYSNAVMNKLEY 225
           RM EG+S+RE VLN+MV+FNVAE NGAVIDE SQ+SFILESLP+SFL F SNAVMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 226 TLTTLLNELQTYKSLMKSKGQEG------TTFK---------------------KKKAAG 285
           TLTTLLNELQT++SLMK KGQ+G      +T K                     KKK  G
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 286 KGSKPHSVAAAAKTGKAKVAEKGKCFHCNMDGHWKRNCPKYLAKKKKVNEGKYDLFVLET 345
           +G+K +   AAAKT K   A KG CFHCN +GHWKRNCPKYLA+KKK  +GKYDL VLET
Sbjct: 241 QGNKAN--LAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 346 CLVENDDSAWILDSRVTNHVCASFQGISFWTQLDDGGMTLKVGTGEVISAVAV 372
           CLVENDDSAWI+DS  TNHVC+SFQGIS W QL+ G MT++VGTG V+SA+AV
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 351

[Close]

BLAST of Moc06g16670 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 9.1e-11
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 371 VVINEISEEAINTSIRVVDQTGTTTRVVDEASTSRQSHPPQVFRVPRRSGRIVPQPDRYV 430
           +V+NE+S+E    S RVV++    TRVV   S++R +H PQ  R PRRSGR+   P RY+
Sbjct: 745 IVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTR-THQPQSLREPRRSGRVTNLPIRYM 804

Query: 431 RLTETQVVIPEDGVKDPLTYKNAMED 457
            LTET  VI +  ++DPLT+K AMED
Sbjct: 805 SLTETLTVISDGDIEDPLTFKKAMED 829

HSP 2 Score: 433.3 bits (1113), Expect = 4.2e-117
Identity = 221/353 (62.61%), Postives = 268/353 (75.92%), Query Frame = 0


Query: 46  MSTSIIALLAAQKLNGENYKQWKSNLNTILVIDDLSFVLQEDCPQAPVPNATVALRNVYD 105
           M+++ + +LAA KLNG NY  WK+ +NT+L+IDDL FVL E+CPQ P  NAT  +R  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 106 RWIKANDKAKVYILAGISDVFAKKHEDTVTAKEIIDSLQSMFGQLSSQARHEALKFIYNS 165
           RW KAN+KA+ YILA +S+V AKKHE  +TA+EI+DSLQ MFGQ S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 166 RMKEGSSLREQVLNLMVYFNVAESNGAVIDEQSQISFILESLPKSFLPFYSNAVMNKLEY 225
           RM EG+S+RE VLN+MV+FNVAE NGAVIDE SQ+SFILESLP+SFL F SNAVMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 226 TLTTLLNELQTYKSLMKSKGQEG------TTFK---------------------KKKAAG 285
           TLTTLLNELQT++SLMK KGQ+G      +T K                     KKK  G
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 286 KGSKPHSVAAAAKTGKAKVAEKGKCFHCNMDGHWKRNCPKYLAKKKKVNEGKYDLFVLET 345
           +G+K +   AAAKT K   A KG CFHCN +GHWKRNCPKYLA+KKK  +GKYDL VLET
Sbjct: 241 QGNKAN--LAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 346 CLVENDDSAWILDSRVTNHVCASFQGISFWTQLDDGGMTLKVGTGEVISAVAV 372
           CLVENDDSAWI+DS  TNHVC+SFQGIS W QL+ G MT++VGTG V+SA+AV
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 351

[Close]

BLAST of Moc06g16670 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 9.1e-11
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 371 VVINEISEEAINTSIRVVDQTGTTTRVVDEASTSRQSHPPQVFRVPRRSGRIVPQPDRYV 430
           +V+NE+S+E    S RVV++    TRVV   S++R +H PQ  R PRRSGR+   P RY+
Sbjct: 745 IVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTR-THQPQSLREPRRSGRVTNLPIRYM 804

Query: 431 RLTETQVVIPEDGVKDPLTYKNAMED 457
            LTET  VI +  ++DPLT+K AMED
Sbjct: 805 SLTETLTVISDGDIEDPLTFKKAMED 829

HSP 2 Score: 433.3 bits (1113), Expect = 4.2e-117
Identity = 221/353 (62.61%), Postives = 268/353 (75.92%), Query Frame = 0


Query: 46  MSTSIIALLAAQKLNGENYKQWKSNLNTILVIDDLSFVLQEDCPQAPVPNATVALRNVYD 105
           M+++ + +LAA KLNG NY  WK+ +NT+L+IDDL FVL E+CPQ P  NAT  +R  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 106 RWIKANDKAKVYILAGISDVFAKKHEDTVTAKEIIDSLQSMFGQLSSQARHEALKFIYNS 165
           RW KAN+KA+ YILA +S+V AKKHE  +TA+EI+DSLQ MFGQ S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 166 RMKEGSSLREQVLNLMVYFNVAESNGAVIDEQSQISFILESLPKSFLPFYSNAVMNKLEY 225
           RM EG+S+RE VLN+MV+FNVAE NGAVIDE SQ+SFILESLP+SFL F SNAVMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 226 TLTTLLNELQTYKSLMKSKGQEG------TTFK---------------------KKKAAG 285
           TLTTLLNELQT++SLMK KGQ+G      +T K                     KKK  G
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 286 KGSKPHSVAAAAKTGKAKVAEKGKCFHCNMDGHWKRNCPKYLAKKKKVNEGKYDLFVLET 345
           +G+K +   AAAKT K   A KG CFHCN +GHWKRNCPKYLA+KKK  +GKYDL VLET
Sbjct: 241 QGNKAN--LAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 346 CLVENDDSAWILDSRVTNHVCASFQGISFWTQLDDGGMTLKVGTGEVISAVAV 372
           CLVENDDSAWI+DS  TNHVC+SFQGIS W QL+ G MT++VGTG V+SA+AV
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 351

[Close]

BLAST of Moc06g16670 vs. NCBI nr
Match: KAA0035879.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051221.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051893.1 gag/pol protein [Cucumis melo var. makuwa] >TYK00551.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 9.1e-11
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 371 VVINEISEEAINTSIRVVDQTGTTTRVVDEASTSRQSHPPQVFRVPRRSGRIVPQPDRYV 430
           +V+NE+S+E    S RVV++    TRVV   S++R +H PQ  R PRRSGR+   P RY+
Sbjct: 745 IVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTR-THQPQSLREPRRSGRVTNLPIRYM 804

Query: 431 RLTETQVVIPEDGVKDPLTYKNAMED 457
            LTET  VI +  ++DPLT+K AMED
Sbjct: 805 SLTETLTVISDGDIEDPLTFKKAMED 829

HSP 2 Score: 433.3 bits (1113), Expect = 4.2e-117
Identity = 221/353 (62.61%), Postives = 268/353 (75.92%), Query Frame = 0


Query: 46  MSTSIIALLAAQKLNGENYKQWKSNLNTILVIDDLSFVLQEDCPQAPVPNATVALRNVYD 105
           M+++ + +LAA KLNG NY  WK+ +NT+L+IDDL FVL E+CPQ P  NAT  +R  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 106 RWIKANDKAKVYILAGISDVFAKKHEDTVTAKEIIDSLQSMFGQLSSQARHEALKFIYNS 165
           RW KAN+KA+ YILA +S+V AKKHE  +TA+EI+DSLQ MFGQ S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 166 RMKEGSSLREQVLNLMVYFNVAESNGAVIDEQSQISFILESLPKSFLPFYSNAVMNKLEY 225
           RM EG+S+RE VLN+MV+FNVAE NGAVIDE SQ+SFILESLP+SFL F SNAVMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 226 TLTTLLNELQTYKSLMKSKGQEG------TTFK---------------------KKKAAG 285
           TLTTLLNELQT++SLMK KGQ+G      +T K                     KKK  G
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 286 KGSKPHSVAAAAKTGKAKVAEKGKCFHCNMDGHWKRNCPKYLAKKKKVNEGKYDLFVLET 345
           +G+K +   AAAKT K   A KG CFHCN +GHWKRNCPKYLA+KKK  +GKYDL VLET
Sbjct: 241 QGNKAN--LAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 346 CLVENDDSAWILDSRVTNHVCASFQGISFWTQLDDGGMTLKVGTGEVISAVAV 372
           CLVENDDSAWI+DS  TNHVC+SFQGIS W QL+ G MT++VGTG V+SA+AV
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 351

[Close]

BLAST of Moc06g16670 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-08
Identity = 70/306 (22.88%), Postives = 127/306 (41.50%), Query Frame = 0


Query: 58  KLNGEN-YKQWKSNLNTILVIDDLSFVLQEDCPQAPVPNATVALRNVYDRWIKANDKAKV 117
           K NG+N +  W+  +  +L+   L  VL  D  +     A        + W   +++A  
Sbjct: 10  KFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKA--------EDWADLDERAAS 69

Query: 118 YILAGISDVFAKKHEDTVTAKEIIDSLQSMFGQLSSQARHEALKFIYNSRMKEGSSLREQ 177
            I   +SD       D  TA+ I   L+S++   +   +    K +Y   M EG++    
Sbjct: 70  AIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSH 129

Query: 178 VLNLMVYFNVAESNGAVIDEQSQISFILESLPKSF-----LPFYSNAVMNKLEYTLTTLL 237
           +           + G  I+E+ +   +L SLP S+        +    +   + T   LL
Sbjct: 130 LNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLL 189

Query: 238 NELQTYKSLMKSKGQEGTTFKKKKAAGKGSKPHSVAAAAKTGKAKVAEKGK---CFHCNM 297
           NE    K   +++GQ   T  + ++  + S  +  + A   GK+K   K +   C++CN 
Sbjct: 190 NEKMRKKP--ENQGQALITEGRGRSYQRSSNNYGRSGA--RGKSKNRSKSRVRNCYNCNQ 249

Query: 298 DGHWKRNCPKYLAKKKKVNEGKYD--------------LFV--LETCL-VENDDSAWILD 338
            GH+KR+CP     K + +  K D              LF+   E C+ +   +S W++D
Sbjct: 250 PGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWVVD 303

[Close]

BLAST of Moc06g16670 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 2.1e-117
Identity = 221/353 (62.61%), Postives = 268/353 (75.92%), Query Frame = 0


Query: 46  MSTSIIALLAAQKLNGENYKQWKSNLNTILVIDDLSFVLQEDCPQAPVPNATVALRNVYD 105
           M+++ + +LAA KLNG NY  WK+ +NT+L+IDDL FVL E+CPQ P  NAT  +R  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 106 RWIKANDKAKVYILAGISDVFAKKHEDTVTAKEIIDSLQSMFGQLSSQARHEALKFIYNS 165
           RW KAN+KA+ YILA +S+V AKKHE  +TA+EI+DSLQ MFGQ S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 166 RMKEGSSLREQVLNLMVYFNVAESNGAVIDEQSQISFILESLPKSFLPFYSNAVMNKLEY 225
           RM EG+S+RE VLN+MV+FNVAE NGAVIDE SQ+SFILESLP+SFL F SNAVMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 226 TLTTLLNELQTYKSLMKSKGQEG------TTFK---------------------KKKAAG 285
           TLTTLLNELQT++SLMK KGQ+G      +T K                     KKK  G
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 286 KGSKPHSVAAAAKTGKAKVAEKGKCFHCNMDGHWKRNCPKYLAKKKKVNEGKYDLFVLET 345
           +G+K +   AAAKT K   A KG CFHCN +GHWKRNCPKYLA+KKK  +GKYDL VLET
Sbjct: 241 QGNKAN--LAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 346 CLVENDDSAWILDSRVTNHVCASFQGISFWTQLDDGGMTLKVGTGEVISAVAV 372
           CLVENDDSAWI+DS  TNHVC+SFQGIS W QL+ G MT++VGTG V+SA+AV
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 351

[Close]

BLAST of Moc06g16670 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.4e-11
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 371 VVINEISEEAINTSIRVVDQTGTTTRVVDEASTSRQSHPPQVFRVPRRSGRIVPQPDRYV 430
           +V+NE+S+E    S RVV++    TRVV   S++R +H PQ  R PRRSGR+   P RY+
Sbjct: 745 IVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTR-THQPQSLREPRRSGRVTNLPIRYM 804

Query: 431 RLTETQVVIPEDGVKDPLTYKNAMED 457
            LTET  VI +  ++DPLT+K AMED
Sbjct: 805 SLTETLTVISDGDIEDPLTFKKAMED 829

HSP 2 Score: 433.3 bits (1113), Expect = 2.1e-117
Identity = 221/353 (62.61%), Postives = 268/353 (75.92%), Query Frame = 0


Query: 46  MSTSIIALLAAQKLNGENYKQWKSNLNTILVIDDLSFVLQEDCPQAPVPNATVALRNVYD 105
           M+++ + +LAA KLNG NY  WK+ +NT+L+IDDL FVL E+CPQ P  NAT  +R  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 106 RWIKANDKAKVYILAGISDVFAKKHEDTVTAKEIIDSLQSMFGQLSSQARHEALKFIYNS 165
           RW KAN+KA+ YILA +S+V AKKHE  +TA+EI+DSLQ MFGQ S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 166 RMKEGSSLREQVLNLMVYFNVAESNGAVIDEQSQISFILESLPKSFLPFYSNAVMNKLEY 225
           RM EG+S+RE VLN+MV+FNVAE NGAVIDE SQ+SFILESLP+SFL F SNAVMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 226 TLTTLLNELQTYKSLMKSKGQEG------TTFK---------------------KKKAAG 285
           TLTTLLNELQT++SLMK KGQ+G      +T K                     KKK  G
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 286 KGSKPHSVAAAAKTGKAKVAEKGKCFHCNMDGHWKRNCPKYLAKKKKVNEGKYDLFVLET 345
           +G+K +   AAAKT K   A KG CFHCN +GHWKRNCPKYLA+KKK  +GKYDL VLET
Sbjct: 241 QGNKAN--LAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 346 CLVENDDSAWILDSRVTNHVCASFQGISFWTQLDDGGMTLKVGTGEVISAVAV 372
           CLVENDDSAWI+DS  TNHVC+SFQGIS W QL+ G MT++VGTG V+SA+AV
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 351

[Close]

BLAST of Moc06g16670 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.4e-11
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 371 VVINEISEEAINTSIRVVDQTGTTTRVVDEASTSRQSHPPQVFRVPRRSGRIVPQPDRYV 430
           +V+NE+S+E    S RVV++    TRVV   S++R +H PQ  R PRRSGR+   P RY+
Sbjct: 745 IVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTR-THQPQSLREPRRSGRVTNLPIRYM 804

Query: 431 RLTETQVVIPEDGVKDPLTYKNAMED 457
            LTET  VI +  ++DPLT+K AMED
Sbjct: 805 SLTETLTVISDGDIEDPLTFKKAMED 829

HSP 2 Score: 433.3 bits (1113), Expect = 2.1e-117
Identity = 221/353 (62.61%), Postives = 268/353 (75.92%), Query Frame = 0


Query: 46  MSTSIIALLAAQKLNGENYKQWKSNLNTILVIDDLSFVLQEDCPQAPVPNATVALRNVYD 105
           M+++ + +LAA KLNG NY  WK+ +NT+L+IDDL FVL E+CPQ P  NAT  +R  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 106 RWIKANDKAKVYILAGISDVFAKKHEDTVTAKEIIDSLQSMFGQLSSQARHEALKFIYNS 165
           RW KAN+KA+ YILA +S+V AKKHE  +TA+EI+DSLQ MFGQ S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 166 RMKEGSSLREQVLNLMVYFNVAESNGAVIDEQSQISFILESLPKSFLPFYSNAVMNKLEY 225
           RM EG+S+RE VLN+MV+FNVAE NGAVIDE SQ+SFILESLP+SFL F SNAVMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 226 TLTTLLNELQTYKSLMKSKGQEG------TTFK---------------------KKKAAG 285
           TLTTLLNELQT++SLMK KGQ+G      +T K                     KKK  G
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 286 KGSKPHSVAAAAKTGKAKVAEKGKCFHCNMDGHWKRNCPKYLAKKKKVNEGKYDLFVLET 345
           +G+K +   AAAKT K   A KG CFHCN +GHWKRNCPKYLA+KKK  +GKYDL VLET
Sbjct: 241 QGNKAN--LAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 346 CLVENDDSAWILDSRVTNHVCASFQGISFWTQLDDGGMTLKVGTGEVISAVAV 372
           CLVENDDSAWI+DS  TNHVC+SFQGIS W QL+ G MT++VGTG V+SA+AV
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWQQLETGEMTMRVGTGHVVSAIAV 351

[Close]

BLAST of Moc06g16670 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 2.1e-117
Identity = 221/353 (62.61%), Postives = 268/353 (75.92%), Query Frame = 0


Query: 46  MSTSIIALLAAQKLNGENYKQWKSNLNTILVIDDLSFVLQEDCPQAPVPNATVALRNVYD 105
           M+++ + +LAA KLNG NY  WK+ +NT+L+IDDL FVL E+CPQ P  NAT  +R  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 106 RWIKANDKAKVYILAGISDVFAKKHEDTVTAKEIIDSLQSMFGQLSSQARHEALKFIYNS 165
           RW KAN+KA+ YILA +S+V AKKHE  +TA+EI+DSLQ MFGQ S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 166 RMKEGSSLREQVLNLMVYFNVAESNGAVIDEQSQISFILESLPKSFLPFYSNAVMNKLEY 225
           RM EG+S+RE VLN+MV+FNVAE NGAVIDE SQ+SFILESLP+SFL F SNAVMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 226 TLTTLLNELQTYKSLMKSKGQEG------TTFK---------------------KKKAAG 285
           TLTTLLNELQT++SLMK KGQ+G      +T K                     KKK  G
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 286 KGSKPHSVAAAAKTGKAKVAEKGKCFHCNMDGHWKRNCPKYLAKKKKVNEGKYDLFVLET 345
           +G+K +   AAAKT K   A KG CFHCN +GHWKRNCPKYLA+KKK  +GKYDL VLET
Sbjct: 241 QGNKAN--LAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 346 CLVENDDSAWILDSRVTNHVCASFQGISFWTQLDDGGMTLKVGTGEVISAVAV 372
           CLVENDDSAWI+DS  TNHVC+SFQGIS W QL+ G MT++VGTG V+SA+AV
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 351

[Close]

BLAST of Moc06g16670 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.4e-11
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 371 VVINEISEEAINTSIRVVDQTGTTTRVVDEASTSRQSHPPQVFRVPRRSGRIVPQPDRYV 430
           +V+NE+S+E    S RVV++    TRVV   S++R +H PQ  R PRRSGR+   P RY+
Sbjct: 745 IVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTR-THQPQSLREPRRSGRVTNLPIRYM 804

Query: 431 RLTETQVVIPEDGVKDPLTYKNAMED 457
            LTET  VI +  ++DPLT+K AMED
Sbjct: 805 SLTETLTVISDGDIEDPLTFKKAMED 829

HSP 2 Score: 433.3 bits (1113), Expect = 2.1e-117
Identity = 221/353 (62.61%), Postives = 268/353 (75.92%), Query Frame = 0


Query: 46  MSTSIIALLAAQKLNGENYKQWKSNLNTILVIDDLSFVLQEDCPQAPVPNATVALRNVYD 105
           M+++ + +LAA KLNG NY  WK+ +NT+L+IDDL FVL E+CPQ P  NAT  +R  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 106 RWIKANDKAKVYILAGISDVFAKKHEDTVTAKEIIDSLQSMFGQLSSQARHEALKFIYNS 165
           RW KAN+KA+ YILA +S+V AKKHE  +TA+EI+DSLQ MFGQ S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 166 RMKEGSSLREQVLNLMVYFNVAESNGAVIDEQSQISFILESLPKSFLPFYSNAVMNKLEY 225
           RM EG+S+RE VLN+MV+FNVAE NGAVIDE SQ+SFILESLP+SFL F SNAVMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 226 TLTTLLNELQTYKSLMKSKGQEG------TTFK---------------------KKKAAG 285
           TLTTLLNELQT++SLMK KGQ+G      +T K                     KKK  G
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 286 KGSKPHSVAAAAKTGKAKVAEKGKCFHCNMDGHWKRNCPKYLAKKKKVNEGKYDLFVLET 345
           +G+K +   AAAKT K   A KG CFHCN +GHWKRNCPKYLA+KKK  +GKYDL VLET
Sbjct: 241 QGNKAN--LAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 346 CLVENDDSAWILDSRVTNHVCASFQGISFWTQLDDGGMTLKVGTGEVISAVAV 372
           CLVENDDSAWI+DS  TNHVC+SFQGIS W QL+ G MT++VGTG V+SA+AV
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 351

[Close]

BLAST of Moc06g16670 vs. TAIR 10
Match: AT5G53670.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 4.0e-04
Identity = 34/142 (23.94%), Postives = 63/142 (44.37%), Query Frame = 0


Query: 38  FGVLSWLRMSTSIIALLAAQKLNGENYKQWKSNLNTILVIDDLSFVLQEDCPQAPVPNAT 97
           F + S L  ++S+  + +   L+G N+ +WK +L  +L + DL   L  + P +P     
Sbjct: 20  FSLFSVLGYTSSLSNVDSIPMLSGSNFSEWKEHLLLVLALMDLDLSLMTERPSSP----- 79

Query: 98  VALRNVYDRWIKANDKA----KVYILAGISDVFAKKHEDTVTAKEIIDSLQSMFGQLSS- 157
                    W ++N  +    K+ I  G   V     +D  TAK+ + SL++ F +    
Sbjct: 80  ----KELKHWDRSNRVSIMIMKIRIPQGFRGVVP---DDVTTAKDFLASLENFFAKNEEA 139

Query: 158 -----QARHEALKFIYNSRMKE 170
                QA   ++ +I N  ++E
Sbjct: 140 ERSRVQAESSSMSYIENENVRE 149

The following BLAST results are available for this feature:

BLAST of Moc06g16670 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044955.1	4.2e-117	62.61	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	4.2e-117	62.61	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	9.1e-11	50.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	9.1e-11	50.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035879.1	9.1e-11	50.00	gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumi...	[more]

Pages

BLAST of Moc06g16670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.5e-08	22.88	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Moc06g16670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	2.1e-117	62.61	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5A7SMH8	4.4e-11	50.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	4.4e-11	50.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7TWB9	2.1e-117	62.61	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]
A0A5A7TWB9	4.4e-11	50.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]

Pages

BLAST of Moc06g16670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53670.1	4.0e-04	23.94	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 501..525
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 107..239 e-value: 4.3E-15 score: 55.7
None	No IPR available	GENE3D	4.10.60.10		coord: 245..309 e-value: 1.8E-6 score: 29.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 469..550
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 510..529
None	No IPR available	PANTHER	PTHR35317:SF16	ZINC FINGER, CCHC-TYPE-RELATED	coord: 52..302
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 52..302
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 605..690 e-value: 2.1E-15 score: 56.8
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 282..298 score: 9.520856
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 274..305

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g16670.1	Moc06g16670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding