Moc06g16400 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g16400
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ty3/gypsy retrotransposon protein
Location	chr6: 12940153 .. 12941558 (-)
RNA-Seq Expression	Moc06g16400
Synteny	Moc06g16400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTCTCTAGGCATTCTTGAGCACGTCCATATGGTGTGATAGGTGATGCACCATCCTCCTTGGTCGCATCACGGCACTTCACTCTCGGCCCTTGACATGGCCCGATGGGCGACATATGCTTGTCGCTGACACTTGCACACTACGTGGGCGTCACAACCTACTCTCTACTAGTATGGTTGTGACACACTGAATACCACCCCAAACAGATGGTCAATCCGAAGTTGTTAACCGTTGTCTGCAGACATGCCTTCGTTGCTATTGCAACGACTCACCTAAACAATGGGGTAATTGGCTGCCATGGGCAGAGTACTGGTATAACATCACGTTTCATATAGCACTCGGGGCAACACCTTTTCAGTTAGTGTATGGACGACAACCTCCAACAGTTATGGGGTATGATAGCATTAAAACGAGCAACGCCACCCTGGATCAACAGCTGGCTAAGAGGGATATGGCTTTGGATCGAATCAAAGAACACCTGAGGAAGGCCCAAGAGCGTATGAAGCTATATGCAAACAAGAAACGGAGGGATCTGAAGTTCGATGAAGGTGAGTAGATGTACTTGAAGCTGAGACCCTACCGTCAGAAGTATGTGGCCAGACGTCGAAATGAGAAGCTAGCTCCGAAATACTTCGGACCCTTTGAGATAATACAGAGGATAGGGAAGGCTGCCTATAAGCTCAAGTTGCCAGCAGAATCGAGCAACCACCCTGTCTTCCATATCTCACAACTAAAGAAGGTTGTAGGCAATTCGACTGTCGTCAAACAGTTGACCCCATGGGTGTCAGCGGATATGAAACGGATAATGAAACCAGAAGAGGTATATACAACACGCACAAATGAAGCAATTGGCAAGGAGGAAGCCCTCGTAGCTTGGAAGCATCTGTCGGAGGAGGAGGTTACTTGGGAGGAGCTGGATACAATCGAATGGCAATTCCCTGGTTTCTTTGTGGGGAATTTTGACACCTACCTTGGGGAAAAGGTAGACTTCAAGGGGGGAGTGATGTTAGACCATCAATTGTATATACTTATGCTGGGGGGTAGGAAAGGAAATTGAGGAGGAGGCCGTAGGAGGAATGGTATTTTGGGTAGAGGCTAGTACGGATGTTGGGAATTAGGGAGTGTATGTAAGGGACCCTCGGGATTGGGGGGGGGGGGGGGGCGCAGCTTTTTGCTTTTTATGTAAGGAATATTGTTTGCCTATTAGGAGAGAAACCAACCCTCTCGAATTGGCTGGTTGGTTTTGTAAGCCTTCGGTCGTTTATGCTTTTGGAATATCTAGAATAGTGAGGACAATACCTCACAGATTTCAGATATGCCGATTCGAGAACCCGGGATCTGGTTGGGGCTCAAGGGATTTAACTGAAAGAATCCACTTTGTCCTGTGCTTTTGGCTCTTCTGA

mRNA sequence

ATGCCTTCTCTAGGCATTCTTGAGCACGTCCATATGTTGACCCCATGGGTGTCAGCGGATATGAAACGGATAATGAAACCAGAAGAGGTATATACAACACGCACAAATGAAGCAATTGGCAAGGAGGAAGCCCTCGTAGCTTGGAAGCATCTGTCGGAGGAGGAGGTTACTTGGGAGGAGCTGGATACAATCGAATGGCAATTCCCTGGTTTCTTTGTGGGGAATTTTGACACCTACCTTGGGGAAAAGGTAGACTTCAAGGGGGGAGTGATGAGAGAAACCAACCCTCTCGAATTGGCTGGTTGGTTTTGTAAGCCTTCGGTCGTTTATGCTTTTGGAATATCTAGAATAGTGAGGACAATACCTCACAGATTTCAGATATGCCGATTCGAGAACCCGGGATCTGGTTGGGGCTCAAGGGATTTAACTGAAAGAATCCACTTTGTCCTGTGCTTTTGGCTCTTCTGA

Coding sequence (CDS)

ATGCCTTCTCTAGGCATTCTTGAGCACGTCCATATGTTGACCCCATGGGTGTCAGCGGATATGAAACGGATAATGAAACCAGAAGAGGTATATACAACACGCACAAATGAAGCAATTGGCAAGGAGGAAGCCCTCGTAGCTTGGAAGCATCTGTCGGAGGAGGAGGTTACTTGGGAGGAGCTGGATACAATCGAATGGCAATTCCCTGGTTTCTTTGTGGGGAATTTTGACACCTACCTTGGGGAAAAGGTAGACTTCAAGGGGGGAGTGATGAGAGAAACCAACCCTCTCGAATTGGCTGGTTGGTTTTGTAAGCCTTCGGTCGTTTATGCTTTTGGAATATCTAGAATAGTGAGGACAATACCTCACAGATTTCAGATATGCCGATTCGAGAACCCGGGATCTGGTTGGGGCTCAAGGGATTTAACTGAAAGAATCCACTTTGTCCTGTGCTTTTGGCTCTTCTGA

Protein sequence

MPSLGILEHVHMLTPWVSADMKRIMKPEEVYTTRTNEAIGKEEALVAWKHLSEEEVTWEELDTIEWQFPGFFVGNFDTYLGEKVDFKGGVMRETNPLELAGWFCKPSVVYAFGISRIVRTIPHRFQICRFENPGSGWGSRDLTERIHFVLCFWLF

Homology

[Close]

BLAST of Moc06g16400 vs. NCBI nr
Match: KAA0061682.1 (soluble inorganic pyrophosphatase 1 [Cucumis melo var. makuwa] >TYK21158.1 soluble inorganic pyrophosphatase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-06
Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 3   SLGILEHVHMLTPWVSADMKRIMKPEEVYTTRTNEAIGKEEALVAWKHLSEEEVTWEELD 62
           ++G  E V  L  +V+ + K I +PEEVY+ R N A  + EAL++WK LS  E TWE   
Sbjct: 471 AVGNRESVQQLDSYVNENHKWITQPEEVYSYRKNSATKEWEALISWKGLSPHEATWENCS 530

Query: 63  TIEWQFPGFFVGNFDTYLGEKVDFK 88
            +++QFP F       +L +KVD +
Sbjct: 531 NMKYQFPEF-------HLEDKVDLE 548

[Close]

BLAST of Moc06g16400 vs. NCBI nr
Match: TYJ96499.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 6.8e-06
Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 3    SLGILEHVHMLTPWVSADMKRIMKPEEVYTTRTNEAIGKEEALVAWKHLSEEEVTWEELD 62
            ++G  E V  L P+++A+ + I +PEEVY+ R N A  + EAL++WK L   E TWE   
Sbjct: 1409 AVGRGETVQPLNPYMNANHEWITRPEEVYSYRKNPATKEWEALISWKGLPPHEATWESCT 1468

Query: 63   TIEWQFPGFFVGNFDTYLGEKVDFK 88
             +++QFP F       +L +KVD +
Sbjct: 1469 DMKYQFPDF-------HLEDKVDLE 1486

[Close]

BLAST of Moc06g16400 vs. NCBI nr
Match: KAA0038753.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 6.8e-06
Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 3    SLGILEHVHMLTPWVSADMKRIMKPEEVYTTRTNEAIGKEEALVAWKHLSEEEVTWEELD 62
            ++G  E V  L P+++A+ + I +PEEVY+ R N A  + EAL++WK L   E TWE   
Sbjct: 1975 AVGKGETVQPLNPYMNANHEWITRPEEVYSYRKNPATKEWEALISWKGLPPHEATWESCT 2034

Query: 63   TIEWQFPGFFVGNFDTYLGEKVDFK 88
             +++QFP F       +L +KVD +
Sbjct: 2035 DMKYQFPDF-------HLEDKVDLE 2052

[Close]

BLAST of Moc06g16400 vs. NCBI nr
Match: KAA0035107.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 6.8e-06
Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 3    SLGILEHVHMLTPWVSADMKRIMKPEEVYTTRTNEAIGKEEALVAWKHLSEEEVTWEELD 62
            ++G  E V  L P+++A+ + I +PEEVY+ R N A  + EAL++WK L   E TWE   
Sbjct: 1794 AVGKGETVQPLNPYMNANHEWITRPEEVYSYRKNPATKEWEALISWKGLPPHEATWESCT 1853

Query: 63   TIEWQFPGFFVGNFDTYLGEKVDFK 88
             +++QFP F       +L +KVD +
Sbjct: 1854 DMKYQFPDF-------HLEDKVDLE 1871

[Close]

BLAST of Moc06g16400 vs. NCBI nr
Match: KAA0058186.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 6.8e-06
Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 3    SLGILEHVHMLTPWVSADMKRIMKPEEVYTTRTNEAIGKEEALVAWKHLSEEEVTWEELD 62
            ++G  E V  L P+++A+ + I +PEEVY+ R N A  + EAL++WK L   E TWE   
Sbjct: 1503 AVGRGETVQPLNPYMNANHEWITRPEEVYSYRKNPATKEWEALISWKGLPPHEATWESCT 1562

Query: 63   TIEWQFPGFFVGNFDTYLGEKVDFK 88
             +++QFP F       +L +KVD +
Sbjct: 1563 DMKYQFPDF-------HLEDKVDLE 1580

[Close]

BLAST of Moc06g16400 vs. ExPASy TrEMBL
Match: A0A5A7V0I1 (Soluble inorganic pyrophosphatase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75860G00280 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 3   SLGILEHVHMLTPWVSADMKRIMKPEEVYTTRTNEAIGKEEALVAWKHLSEEEVTWEELD 62
           ++G  E V  L  +V+ + K I +PEEVY+ R N A  + EAL++WK LS  E TWE   
Sbjct: 471 AVGNRESVQQLDSYVNENHKWITQPEEVYSYRKNSATKEWEALISWKGLSPHEATWENCS 530

Query: 63  TIEWQFPGFFVGNFDTYLGEKVDFK 88
            +++QFP F       +L +KVD +
Sbjct: 531 NMKYQFPEF-------HLEDKVDLE 548

[Close]

BLAST of Moc06g16400 vs. ExPASy TrEMBL
Match: A0A5D3DMY9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00980 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.3e-06
Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 3    SLGILEHVHMLTPWVSADMKRIMKPEEVYTTRTNEAIGKEEALVAWKHLSEEEVTWEELD 62
            ++G  E V  L P+++A+ + I +PEEVY+ R N A  + EAL++WK L   E TWE   
Sbjct: 1532 AVGKGETVQPLNPYMNANHEWITRPEEVYSYRKNPATKEWEALISWKGLPPHEATWESCT 1591

Query: 63   TIEWQFPGFFVGNFDTYLGEKVDFK 88
             +++QFP F       +L +KVD +
Sbjct: 1592 DMKYQFPDF-------HLEDKVDLE 1609

[Close]

BLAST of Moc06g16400 vs. ExPASy TrEMBL
Match: A0A5A7T725 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G003050 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.3e-06
Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 3    SLGILEHVHMLTPWVSADMKRIMKPEEVYTTRTNEAIGKEEALVAWKHLSEEEVTWEELD 62
            ++G  E V  L P+++A+ + I +PEEVY+ R N A  + EAL++WK L   E TWE   
Sbjct: 1975 AVGKGETVQPLNPYMNANHEWITRPEEVYSYRKNPATKEWEALISWKGLPPHEATWESCT 2034

Query: 63   TIEWQFPGFFVGNFDTYLGEKVDFK 88
             +++QFP F       +L +KVD +
Sbjct: 2035 DMKYQFPDF-------HLEDKVDLE 2052

[Close]

BLAST of Moc06g16400 vs. ExPASy TrEMBL
Match: A0A5D3E6U0 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006720 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.3e-06
Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 3   SLGILEHVHMLTPWVSADMKRIMKPEEVYTTRTNEAIGKEEALVAWKHLSEEEVTWEELD 62
           ++G  E V  L P+++A+ + I +PEEVY+ R N A  + EAL++WK L   E TWE   
Sbjct: 870 AVGKGETVQPLNPYMNANHEWITRPEEVYSYRKNPATKEWEALISWKGLPPHEATWESCT 929

Query: 63  TIEWQFPGFFVGNFDTYLGEKVDFK 88
            +++QFP F       +L +KVD +
Sbjct: 930 DMKYQFPDF-------HLEDKVDLE 947

[Close]

BLAST of Moc06g16400 vs. ExPASy TrEMBL
Match: A0A5D3C9P5 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G00120 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.3e-06
Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 3    SLGILEHVHMLTPWVSADMKRIMKPEEVYTTRTNEAIGKEEALVAWKHLSEEEVTWEELD 62
            ++G  E V  L P+++A+ + I +PEEVY+ R N A  + EAL++WK L   E TWE   
Sbjct: 2054 AVGKGETVQPLNPYMNANHEWITRPEEVYSYRKNPATKEWEALISWKGLPPHEATWESCT 2113

Query: 63   TIEWQFPGFFVGNFDTYLGEKVDFK 88
             +++QFP F       +L +KVD +
Sbjct: 2114 DMKYQFPDF-------HLEDKVDLE 2131

The following BLAST results are available for this feature:

BLAST of Moc06g16400 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061682.1	2.3e-06	40.00	soluble inorganic pyrophosphatase 1 [Cucumis melo var. makuwa] >TYK21158.1 solub...	[more]
TYJ96499.1	6.8e-06	38.82	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0038753.1	6.8e-06	38.82	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035107.1	6.8e-06	38.82	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0058186.1	6.8e-06	38.82	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Moc06g16400 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g16400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V0I1	1.1e-06	40.00	Soluble inorganic pyrophosphatase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5D3DMY9	3.3e-06	38.82	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T725	3.3e-06	38.82	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3E6U0	3.3e-06	38.82	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5D3C9P5	3.3e-06	38.82	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Moc06g16400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.40		coord: 22..71 e-value: 4.7E-5 score: 25.0
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 25..69 score: 9.190901
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 9..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g16400.1	Moc06g16400.1	mRNA