Moc06g16190 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g16190
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Locationchr6: 12740147 .. 12741322 (-)
RNA-Seq ExpressionMoc06g16190
SyntenyMoc06g16190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCAGCATATGAGACCGACCTGGCCAAGTCGGTCCCAGTCAAGATCTTAGACAATCCTTCAATCTTGGACCCAGACGTGATGGAGATTGACACTCCATCACCCTCATGGATGGATCCAATCGTGGAGTTCATCAAAGGAAATCCGCCGCAAGAACTGAAGGAGCAAAAGAGGATGGCACGGAAAGCAGCTCGGTTCGTACTCCGAGATGGAGCGTTGTACCGACGTGGCTTCTCCCTGCCCCTGCTTAAGTGTGTAACTCTTGAAGAAGGCCTTTACATCCTTAGGGAAGTCCATGAAGGAGTGTGTGGAAACCACTCAGGCCCCATGGCCATTCGCGCAATGGGGAGTAGACATCATAGGTCATTTTCCCCTGGGCAAAGGGCAAACTAAGTTCGCTGTTGTCTCTGTGGACTACTTCACTAAGTAGGCAGAGGTTGAGGCGTTATCCCACATCACGGAGTCCAGAGTCACATATTTTATATGGGCAAACATTGTATGTCGTTTCGGTATACCAAACGCCATTGTGACAAACAACAGAAAACAATTTGACAATGCAAAGTTCAAAACTTTTGCAGTAACCTGGGAATAAGTCATCTCAGTTCGTCCCCTGCTCATCCGAAGGCCAATGGGCAGGTCGAAGCAATAAACAAAATTATAAAACGAGGACTTAAGCTGAGATTGGACTCCAGAAAGGGAAGATGGGCCGAGGAGCTACCTGAAGTGTTATGGTCATATCTGACTACCCCGAGAGAGTCAACGGGCGAAACTCCATTCTTGCTAGCCTTTGGCTTCGAAGCTGTCGTACCAGTTGAGATCGGCATACCAACAGACAGGGTAGAGCAGTACGAGCCAGCGAAGAACGAGGAAGAGCTACTCCTTAACCTTGACTTATTGGAAGAAAAAAGGGAAATGGCTCAGCTGCGCTTAACAGAATATCAGAACAGAATGACCAGACATTACAACACCCGAGTTCGACCTCGAAGCTTCCAAGTTGGACATTTAGTTTTAAGAAAGATTCAGAGTCATGTGAGCACTCTTGACCCGAGTTGGGAAGGACCATTCGAGGTTAAAGGCATATTCCTACCTAGAACGTACATGCTGGCCGATCTGGAAGGAAATGTGCTTGTGCATCCATGGAATGCAGAGCATCTAAAGCACTATTACCCTTGA

mRNA sequence

ATGGCATCAGCATATGAGACCGACCTGGCCAAGTCGGTCCCAGTCAAGATCTTAGACAATCCTTCAATCTTGGACCCAGACGTGATGGAGATTGACACTCCATCACCCTCATGGATGGATCCAATCGTGGAGTTCATCAAAGGAAATCCGCCGCAAGAACTGAAGGAGCAAAAGAGGATGGCACGGAAAGCAGCTCGGTTCGTACTCCGAGATGGAGCGTTGTACCGACGTGGCTTCTCCCTGCCCCTGCTTAAGTGTGTAACTCTTGAAGAAGGCCTTTACATCCTTAGGGAAGTCCATGAAGGAGTACATTACAACACCCGAGTTCGACCTCGAAGCTTCCAAGTTGGACATTTAGTTTTAAGAAAGATTCAGAGTCATGTGAGCACTCTTGACCCGAGTTGGGAAGGACCATTCGAGGTTAAAGGCATATTCCTACCTAGAACGTACATGCTGGCCGATCTGGAAGGAAATGTGCTTGTGCATCCATGGAATGCAGAGCATCTAAAGCACTATTACCCTTGA

Coding sequence (CDS)

ATGGCATCAGCATATGAGACCGACCTGGCCAAGTCGGTCCCAGTCAAGATCTTAGACAATCCTTCAATCTTGGACCCAGACGTGATGGAGATTGACACTCCATCACCCTCATGGATGGATCCAATCGTGGAGTTCATCAAAGGAAATCCGCCGCAAGAACTGAAGGAGCAAAAGAGGATGGCACGGAAAGCAGCTCGGTTCGTACTCCGAGATGGAGCGTTGTACCGACGTGGCTTCTCCCTGCCCCTGCTTAAGTGTGTAACTCTTGAAGAAGGCCTTTACATCCTTAGGGAAGTCCATGAAGGAGTACATTACAACACCCGAGTTCGACCTCGAAGCTTCCAAGTTGGACATTTAGTTTTAAGAAAGATTCAGAGTCATGTGAGCACTCTTGACCCGAGTTGGGAAGGACCATTCGAGGTTAAAGGCATATTCCTACCTAGAACGTACATGCTGGCCGATCTGGAAGGAAATGTGCTTGTGCATCCATGGAATGCAGAGCATCTAAAGCACTATTACCCTTGA

Protein sequence

MASAYETDLAKSVPVKILDNPSILDPDVMEIDTPSPSWMDPIVEFIKGNPPQELKEQKRMARKAARFVLRDGALYRRGFSLPLLKCVTLEEGLYILREVHEGVHYNTRVRPRSFQVGHLVLRKIQSHVSTLDPSWEGPFEVKGIFLPRTYMLADLEGNVLVHPWNAEHLKHYYP
Homology
BLAST of Moc06g16190 vs. NCBI nr
Match: XP_022152853.1 (uncharacterized protein LOC111020478 [Momordica charantia])

HSP 1 Score: 207.2 bits (526), Expect = 1.1e-49
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MASAYETDLAKSVPVKILDNPSILDPDVMEIDTPSPSWMDPIVEFIKGNPPQELKEQKRM 60
           MASAYETDLAKSVPVKILDNPSILDPDVMEIDTPSPSWMDPIVEFIKGNPPQELKEQKRM
Sbjct: 313 MASAYETDLAKSVPVKILDNPSILDPDVMEIDTPSPSWMDPIVEFIKGNPPQELKEQKRM 372

Query: 61  ARKAARFVLRDGALYRRGFSLPLLKCVTLEEGLYILREVHEGV 104
           ARKAARFVLRDGALYRRGFSLPLLKCVTLEEGLYILREVHEGV
Sbjct: 373 ARKAARFVLRDGALYRRGFSLPLLKCVTLEEGLYILREVHEGV 415

BLAST of Moc06g16190 vs. NCBI nr
Match: XP_022144032.1 (uncharacterized protein LOC111013824 [Momordica charantia])

HSP 1 Score: 200.3 bits (508), Expect = 1.4e-47
Identity = 131/347 (37.75%), Postives = 148/347 (42.65%), Query Frame = 0

Query: 1   MASAYETDLAKSVPVKILDNPSILDPDVMEIDTPSPSWMDPIVEFIKGNPPQELKEQKRM 60
           +ASAYETDLA+SV V ILDNPSIL+PD+ME++TP PSWMDPIVEFIK NPPQ+ K  K+M
Sbjct: 122 LASAYETDLARSVLVVILDNPSILEPDLMEVETPEPSWMDPIVEFIKRNPPQDSKAHKKM 181

Query: 61  ARKAARFVLRDGALYRRGFSLPLLKCVTLEEGLYILREVHEGVHYN-------------- 120
           +RK ARF+LRDGALYRRGFSLPLLKCVT E+G YI++E+HEGV  N              
Sbjct: 182 SRKVARFILRDGALYRRGFSLPLLKCVTPEDGSYIIKEIHEGVCGNHSGARSLSAKVVRQ 241

Query: 121 ---------------------------------------------TRVRPRSFQVGHLVL 175
                                                        T  R  SF + ++V 
Sbjct: 242 GYYWPIVDQDAKKFVKACDNWQTKFDVVAVDYFTKWAEVETLSHITESRVTSFILTNIVC 301

BLAST of Moc06g16190 vs. NCBI nr
Match: XP_022151715.1 (uncharacterized protein LOC111019628 [Momordica charantia])

HSP 1 Score: 193.7 bits (491), Expect = 1.3e-45
Identity = 95/103 (92.23%), Postives = 100/103 (97.09%), Query Frame = 0

Query: 1   MASAYETDLAKSVPVKILDNPSILDPDVMEIDTPSPSWMDPIVEFIKGNPPQELKEQKRM 60
           +ASAYETDLA+SVPV+ILDNPSILDPDVMEID PSPSWMDPIVEFI+GNPPQELKEQK+M
Sbjct: 222 LASAYETDLARSVPVEILDNPSILDPDVMEIDIPSPSWMDPIVEFIQGNPPQELKEQKKM 281

Query: 61  ARKAARFVLRDGALYRRGFSLPLLKCVTLEEGLYILREVHEGV 104
           ARKAARFVLRDGALYRRGFSLPLLKCVT EEGLYILRE HEGV
Sbjct: 282 ARKAARFVLRDGALYRRGFSLPLLKCVTPEEGLYILREFHEGV 324

BLAST of Moc06g16190 vs. NCBI nr
Match: XP_022158092.1 (uncharacterized protein LOC111024661 [Momordica charantia])

HSP 1 Score: 188.0 bits (476), Expect = 7.1e-44
Identity = 90/103 (87.38%), Postives = 99/103 (96.12%), Query Frame = 0

Query: 1   MASAYETDLAKSVPVKILDNPSILDPDVMEIDTPSPSWMDPIVEFIKGNPPQELKEQKRM 60
           +ASAYETDLA+SVPV+ILD+PSIL PDVMEIDTPSPSWMDPI+EFIKGNPPQ+ KEQKRM
Sbjct: 258 LASAYETDLARSVPVEILDSPSILKPDVMEIDTPSPSWMDPILEFIKGNPPQDSKEQKRM 317

Query: 61  ARKAARFVLRDGALYRRGFSLPLLKCVTLEEGLYILREVHEGV 104
           AR+AARF+LRDG LYRRGFSLPLLKCVT EEGLYILRE+HEGV
Sbjct: 318 ARRAARFILRDGVLYRRGFSLPLLKCVTPEEGLYILREIHEGV 360

BLAST of Moc06g16190 vs. NCBI nr
Match: XP_022150100.1 (uncharacterized protein LOC111018362 [Momordica charantia])

HSP 1 Score: 183.3 bits (464), Expect = 1.7e-42
Identity = 88/103 (85.44%), Postives = 99/103 (96.12%), Query Frame = 0

Query: 1   MASAYETDLAKSVPVKILDNPSILDPDVMEIDTPSPSWMDPIVEFIKGNPPQELKEQKRM 60
           +ASAYETDLA+SVPV+ILD+PSIL+PDVME+DTPSPSWMDPIVEFIKGNP Q+ KEQK+M
Sbjct: 413 LASAYETDLARSVPVEILDSPSILEPDVMEVDTPSPSWMDPIVEFIKGNPLQDPKEQKKM 472

Query: 61  ARKAARFVLRDGALYRRGFSLPLLKCVTLEEGLYILREVHEGV 104
           AR+AARF LR+GALYRRGFSLPLLKCVT EEGLYILRE+HEGV
Sbjct: 473 ARRAARFTLREGALYRRGFSLPLLKCVTPEEGLYILREIHEGV 515

BLAST of Moc06g16190 vs. ExPASy TrEMBL
Match: A0A6J1DG06 (uncharacterized protein LOC111020478 OS=Momordica charantia OX=3673 GN=LOC111020478 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 5.5e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MASAYETDLAKSVPVKILDNPSILDPDVMEIDTPSPSWMDPIVEFIKGNPPQELKEQKRM 60
           MASAYETDLAKSVPVKILDNPSILDPDVMEIDTPSPSWMDPIVEFIKGNPPQELKEQKRM
Sbjct: 313 MASAYETDLAKSVPVKILDNPSILDPDVMEIDTPSPSWMDPIVEFIKGNPPQELKEQKRM 372

Query: 61  ARKAARFVLRDGALYRRGFSLPLLKCVTLEEGLYILREVHEGV 104
           ARKAARFVLRDGALYRRGFSLPLLKCVTLEEGLYILREVHEGV
Sbjct: 373 ARKAARFVLRDGALYRRGFSLPLLKCVTLEEGLYILREVHEGV 415

BLAST of Moc06g16190 vs. ExPASy TrEMBL
Match: A0A6J1CSJ1 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013824 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 6.7e-48
Identity = 131/347 (37.75%), Postives = 148/347 (42.65%), Query Frame = 0

Query: 1   MASAYETDLAKSVPVKILDNPSILDPDVMEIDTPSPSWMDPIVEFIKGNPPQELKEQKRM 60
           +ASAYETDLA+SV V ILDNPSIL+PD+ME++TP PSWMDPIVEFIK NPPQ+ K  K+M
Sbjct: 122 LASAYETDLARSVLVVILDNPSILEPDLMEVETPEPSWMDPIVEFIKRNPPQDSKAHKKM 181

Query: 61  ARKAARFVLRDGALYRRGFSLPLLKCVTLEEGLYILREVHEGVHYN-------------- 120
           +RK ARF+LRDGALYRRGFSLPLLKCVT E+G YI++E+HEGV  N              
Sbjct: 182 SRKVARFILRDGALYRRGFSLPLLKCVTPEDGSYIIKEIHEGVCGNHSGARSLSAKVVRQ 241

Query: 121 ---------------------------------------------TRVRPRSFQVGHLVL 175
                                                        T  R  SF + ++V 
Sbjct: 242 GYYWPIVDQDAKKFVKACDNWQTKFDVVAVDYFTKWAEVETLSHITESRVTSFILTNIVC 301

BLAST of Moc06g16190 vs. ExPASy TrEMBL
Match: A0A6J1DBZ0 (uncharacterized protein LOC111019628 OS=Momordica charantia OX=3673 GN=LOC111019628 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 6.2e-46
Identity = 95/103 (92.23%), Postives = 100/103 (97.09%), Query Frame = 0

Query: 1   MASAYETDLAKSVPVKILDNPSILDPDVMEIDTPSPSWMDPIVEFIKGNPPQELKEQKRM 60
           +ASAYETDLA+SVPV+ILDNPSILDPDVMEID PSPSWMDPIVEFI+GNPPQELKEQK+M
Sbjct: 222 LASAYETDLARSVPVEILDNPSILDPDVMEIDIPSPSWMDPIVEFIQGNPPQELKEQKKM 281

Query: 61  ARKAARFVLRDGALYRRGFSLPLLKCVTLEEGLYILREVHEGV 104
           ARKAARFVLRDGALYRRGFSLPLLKCVT EEGLYILRE HEGV
Sbjct: 282 ARKAARFVLRDGALYRRGFSLPLLKCVTPEEGLYILREFHEGV 324

BLAST of Moc06g16190 vs. ExPASy TrEMBL
Match: A0A6J1DWA1 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024661 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 3.4e-44
Identity = 90/103 (87.38%), Postives = 99/103 (96.12%), Query Frame = 0

Query: 1   MASAYETDLAKSVPVKILDNPSILDPDVMEIDTPSPSWMDPIVEFIKGNPPQELKEQKRM 60
           +ASAYETDLA+SVPV+ILD+PSIL PDVMEIDTPSPSWMDPI+EFIKGNPPQ+ KEQKRM
Sbjct: 258 LASAYETDLARSVPVEILDSPSILKPDVMEIDTPSPSWMDPILEFIKGNPPQDSKEQKRM 317

Query: 61  ARKAARFVLRDGALYRRGFSLPLLKCVTLEEGLYILREVHEGV 104
           AR+AARF+LRDG LYRRGFSLPLLKCVT EEGLYILRE+HEGV
Sbjct: 318 ARRAARFILRDGVLYRRGFSLPLLKCVTPEEGLYILREIHEGV 360

BLAST of Moc06g16190 vs. ExPASy TrEMBL
Match: A0A6J1D7J6 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111018362 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 8.4e-43
Identity = 88/103 (85.44%), Postives = 99/103 (96.12%), Query Frame = 0

Query: 1   MASAYETDLAKSVPVKILDNPSILDPDVMEIDTPSPSWMDPIVEFIKGNPPQELKEQKRM 60
           +ASAYETDLA+SVPV+ILD+PSIL+PDVME+DTPSPSWMDPIVEFIKGNP Q+ KEQK+M
Sbjct: 413 LASAYETDLARSVPVEILDSPSILEPDVMEVDTPSPSWMDPIVEFIKGNPLQDPKEQKKM 472

Query: 61  ARKAARFVLRDGALYRRGFSLPLLKCVTLEEGLYILREVHEGV 104
           AR+AARF LR+GALYRRGFSLPLLKCVT EEGLYILRE+HEGV
Sbjct: 473 ARRAARFTLREGALYRRGFSLPLLKCVTPEEGLYILREIHEGV 515

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022152853.11.1e-49100.00uncharacterized protein LOC111020478 [Momordica charantia][more]
XP_022144032.11.4e-4737.75uncharacterized protein LOC111013824 [Momordica charantia][more]
XP_022151715.11.3e-4592.23uncharacterized protein LOC111019628 [Momordica charantia][more]
XP_022158092.17.1e-4487.38uncharacterized protein LOC111024661 [Momordica charantia][more]
XP_022150100.11.7e-4285.44uncharacterized protein LOC111018362 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DG065.5e-50100.00uncharacterized protein LOC111020478 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A6J1CSJ16.7e-4837.75Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013824 PE=4 SV=1[more]
A0A6J1DBZ06.2e-4692.23uncharacterized protein LOC111019628 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A6J1DWA13.4e-4487.38Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024661 PE=4 SV=1[more]
A0A6J1D7J68.4e-4385.44Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111018362 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g16190.1Moc06g16190.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component GO:0030430 host cell cytoplasm
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity