Moc06g16050 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g16050
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr6: 12676646 .. 12678704 (-)
RNA-Seq ExpressionMoc06g16050
SyntenyMoc06g16050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGCTGTTTCCATGAAGGGTAACGCGAGAGAAACCGAGTTGCGGTTAGTTTGCCACGGCGGAGTGGCGTGTGTGATCGCCACACGAGGGTGGCGTTGTTGAAGCCTTGTGCAGTTCGTTCGTTTGCCACAACAGGTGGTTGAGAAACGGCTTGTTGCAGTTGTGCGTGCCACGACAGGTGGCTTGTTGAAGAACTTGGCCGAAGGGAAGTGCCAACAGTTGTGTGGGCTGTGTGAGAAGCTGCTGTACCTTGCTTCAGATGGGTTAGTGCCATGGTGAGTCAATTTCGTGGTAGGCTTCCGAGCCTCACCTTGAGGGGGCCCTGTTATGTACCGCTCAGTCTGATGCACGATTATTTACAAGCGGGTCAGTTGGCAGCCAGTCCGAAGTTGGAGTTCGGGTCGTCATCGGGACGATGCCGAGTTTAAGTGGGGGAGAGTGTTACAACCCCAACTGTTATCTTTGGATTGTGCCCCACGAGTATGTCATCGAGGACGATGATAGTTTAAGTCGGGGAGAATGTCACAACCATACTAGTAGAGAGTAGGTTGTGACGCCCACATAGTGGACAAGTGGTGGCGACATGCATATGTCGCCCGTCGGGCCATGTTGAGGGCCGAGAGAGAAGTGCCGTGATGCGACCAAGGAGGATGGTGCATCACCTATCACACCCCATGGATGTGCTCAAGAATGCCTAGAGAAGGCATATGCAGAATGCAAGGCGAAGGCGATGTCAGTGATGTTGGTGACAAGCTCAACGGGGGCCAGTTGGGGCCCCGGGCCACGACCCTAGAAGTCGGGGTTCTGTCGAGAGTTGGGACGAGCGGCTTTAGAGTTAGATGTATATTAGTGAGATATGTAAGCACGCCAAGTTTCGTGTCAATCGGAGTTCAGACGTGCGCTCTACGTTGGCGAGTGACTCCTCGCCACTTTGCACGTACACGCCTGCCAGGCCAAGAATGCCTTAGAATGTACCTTAGGGGGAGGCATGGTGTTAGCTCTCCACCACCCCTAGGCCCTATGGCCTAAGTGAGCTACCCCATGGCACATGCGTGTGTCATGGCGTGGGCGAGCGTTGCAAGACCAAGGTCTTGGGCGTCTTCCTTCGAGAATGGGAATCTCAAGGACAGTGTCGGACGGCACGGGTGTGCCGGCATTGCGCCTCGTCCCATGGGCTGGAGGTTGCACATAGGGGCCGTTATGCAGTACGGTATGCCCGAACGACAAGGCACGGTTGCGGGAGTCGACGTGCCACGATTATGTCCGGATGGATGGATGTCCGAAAGGTCCCGATCATAAATACAAGTCTCGGGGCCAAGTCCAACGGCAAGCCCGATGACATCCCAATGCTCGGGGTGGCATCCTACAGTACCGGTGGGCATCCGGTAAGTGAGAAAAAGCTAGTCTTGGCCCGGTAAGCGGCAAGACTCATCCCGGTTGCCAAGTTTAGTCATTCCTTGTCCGGATCTCGGCAGGAATCATCCCGGCAGTACCCGGTAAGGCCGTTTAGCCCGTTATTGACTAGTTTCTCGGCAGAAATGGTCCTAGAGGCGTCCGATGGGTCCGATAAGCTAGTTTTGACATAGTTAAGCCACAGGAATCTCCCGGTTGTACCCGGTTGGCGTTTTAAGCTCGTTCTGACCCCGTTATAGGTCAGAACTCATCCCGGTAAGGTCCTGGCTCATAGTAGAAGCAGGACGGTTGAGTGGTCGAGAGCCAAGATGGTGGGAAAAGCGAAATGAGGCTGAGTCGAGGAAGAAAGATCCTCGTCTAAAGTCCGACGAAGCCACAAAGGGCGCGAAGAGTAGATTGGGGCTAGAGTTCCTCGTAAGGCTGGCCATGGTCGAGCGTAGATCATGGCGCCGCGCGGTTGAAAAATGTACGACCGTGACACTGAGCTGACGTGATCTCCATTAACTCAGGCTGGTCGACGTATGATTCAGCAAGTATTTCAACTGGAACCGTTCTTGGTAGATCGGTCTCGTATGCCGAGGCCAGGCGAGCCAGTGCGTCGGCGTTGGAGTTTTCGGACCTCGGCACCTGTCGAATCACATAG

mRNA sequence

ATGAGAGCTGTTTCCATGAAGGGTAACGCGAGAGAAACCGAGTTGCGGTTAGTGGTTGAGAAACGGCTTGTTGCAGTTGTGCGTGCCACGACAGGTGGCTTGTTGAAGAACTTGGCCGAAGGGAAGTGCCAACAGTTGTGTGGGCTGTGTGAGAAGCTGCTGTACCTTGCTTCAGATGGGTTAGTGCCATGCCAGTCCGAAGTTGGAGTTCGGGTCGTCATCGGGACGATGCCGAGTTTAAGTGGGGGAGAGTGTTACAACCCCAACTGTTATCTTTGGATTGTGCCCCACGAAATGCAAGGCGAAGGCGATGTCAGTGATGTTGGTGACAAGCTCAACGGGGGCCAGTTGGGGCCCCGGGCCACGACCCTAGAAGTCGGGGTTCTGTCGAGAGTTGGGACGAGCGGCTTTAGAGTTAGATGTATATTAGTGAGATATCTCTCCACCACCCCTAGGCCCTATGGCCTAAGTGAGCTACCCCATGGCACATGCGTGTGTCATGGCGTGGGCGAGCGTTGCAAGACCAAGGTCTTGGGCGTCTTCCTTCGAGAATGGGAATCTCAAGGACAGTGTCGGACGGCACGGGTGTGCCGGCATTGCGCCTCGTCCCATGGGCTGGAGGTTGCACATAGGGGCCGTTATGCAGTACGGTATGCCCGAACGACAAGGCACGGTTGCGGGAGTCGACGTGCCACGATTATGTCCGGATGGATGGATGTCCGAAAGGTCCCGATCATAAATACAAGTCTCGGGGCCAAGTCCAACGGCAAGCCCGATGACATCCCAATGCTCGGGGTGGCATCCTACAGTACCGGTGGGCATCCGGAATCATCCCGGCAGTACCCGGTAAGGCCGTTTAGCCCGTTATTGACTAGTTTCTCGGCAGAAATGGTCCTAGAGGCGTCCGATGGGTCAGAACTCATCCCGGTAAGGTCCTGGCTCATAGTAGAAGCAGGACGGTTGAGTGGTCGAGAGCCAAGATGGTGGGAAAAGCGAAATGAGGCTGAGTCGAGGAAGAAAGATCCTCGTCTAAAGTCCGACGAAGCCACAAAGGGCGCGAAGAGTAGATTGGGGCTAGAGTTCCTCGTAAGGCTGGCCATGGTCGAGCGCTGGTCGACGTATGATTCAGCAAGTATTTCAACTGGAACCGTTCTTGGTAGATCGGTCTCGTATGCCGAGGCCAGGCGAGCCAGTGCGTCGGCGTTGGAGTTTTCGGACCTCGGCACCTGTCGAATCACATAG

Coding sequence (CDS)

ATGAGAGCTGTTTCCATGAAGGGTAACGCGAGAGAAACCGAGTTGCGGTTAGTGGTTGAGAAACGGCTTGTTGCAGTTGTGCGTGCCACGACAGGTGGCTTGTTGAAGAACTTGGCCGAAGGGAAGTGCCAACAGTTGTGTGGGCTGTGTGAGAAGCTGCTGTACCTTGCTTCAGATGGGTTAGTGCCATGCCAGTCCGAAGTTGGAGTTCGGGTCGTCATCGGGACGATGCCGAGTTTAAGTGGGGGAGAGTGTTACAACCCCAACTGTTATCTTTGGATTGTGCCCCACGAAATGCAAGGCGAAGGCGATGTCAGTGATGTTGGTGACAAGCTCAACGGGGGCCAGTTGGGGCCCCGGGCCACGACCCTAGAAGTCGGGGTTCTGTCGAGAGTTGGGACGAGCGGCTTTAGAGTTAGATGTATATTAGTGAGATATCTCTCCACCACCCCTAGGCCCTATGGCCTAAGTGAGCTACCCCATGGCACATGCGTGTGTCATGGCGTGGGCGAGCGTTGCAAGACCAAGGTCTTGGGCGTCTTCCTTCGAGAATGGGAATCTCAAGGACAGTGTCGGACGGCACGGGTGTGCCGGCATTGCGCCTCGTCCCATGGGCTGGAGGTTGCACATAGGGGCCGTTATGCAGTACGGTATGCCCGAACGACAAGGCACGGTTGCGGGAGTCGACGTGCCACGATTATGTCCGGATGGATGGATGTCCGAAAGGTCCCGATCATAAATACAAGTCTCGGGGCCAAGTCCAACGGCAAGCCCGATGACATCCCAATGCTCGGGGTGGCATCCTACAGTACCGGTGGGCATCCGGAATCATCCCGGCAGTACCCGGTAAGGCCGTTTAGCCCGTTATTGACTAGTTTCTCGGCAGAAATGGTCCTAGAGGCGTCCGATGGGTCAGAACTCATCCCGGTAAGGTCCTGGCTCATAGTAGAAGCAGGACGGTTGAGTGGTCGAGAGCCAAGATGGTGGGAAAAGCGAAATGAGGCTGAGTCGAGGAAGAAAGATCCTCGTCTAAAGTCCGACGAAGCCACAAAGGGCGCGAAGAGTAGATTGGGGCTAGAGTTCCTCGTAAGGCTGGCCATGGTCGAGCGCTGGTCGACGTATGATTCAGCAAGTATTTCAACTGGAACCGTTCTTGGTAGATCGGTCTCGTATGCCGAGGCCAGGCGAGCCAGTGCGTCGGCGTTGGAGTTTTCGGACCTCGGCACCTGTCGAATCACATAG

Protein sequence

MRAVSMKGNARETELRLVVEKRLVAVVRATTGGLLKNLAEGKCQQLCGLCEKLLYLASDGLVPCQSEVGVRVVIGTMPSLSGGECYNPNCYLWIVPHEMQGEGDVSDVGDKLNGGQLGPRATTLEVGVLSRVGTSGFRVRCILVRYLSTTPRPYGLSELPHGTCVCHGVGERCKTKVLGVFLREWESQGQCRTARVCRHCASSHGLEVAHRGRYAVRYARTTRHGCGSRRATIMSGWMDVRKVPIINTSLGAKSNGKPDDIPMLGVASYSTGGHPESSRQYPVRPFSPLLTSFSAEMVLEASDGSELIPVRSWLIVEAGRLSGREPRWWEKRNEAESRKKDPRLKSDEATKGAKSRLGLEFLVRLAMVERWSTYDSASISTGTVLGRSVSYAEARRASASALEFSDLGTCRIT
Homology
[Close]
BLAST of Moc06g16050 vs. NCBI nr
Match: KAG7022404.1 (hypothetical protein SDJN02_16135, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.8 bits (138), Expect = 2.6e-04
Identity = 40/118 (33.90%), Postives = 61/118 (51.69%), Query Frame = 0 

Query: 104 DVS-DVGDKLN--GGQLGPRATTLEVGVLSRVGTSGFRVRCILVRYLSTTPRPYGLSE-- 163
           D+S D+ DK+    G++GPRA T +V V   + + G  V+ + ++Y   +P    +    
Sbjct: 54  DISIDMKDKIGLLKGRVGPRALTSKVEVSEGIWSCGSGVKSVHMKY-EYSPSLVSIGHWT 113

Query: 164 -------LPHGTCVCHGVGERCKTKVLGVFLREWESQGQCRTARVCRHCASSHGLEVA 210
                   PH   V   +GER +  V G    +W  +GQ +TARVCR+CA +  LEVA
Sbjct: 114 DNARRRMTPHENHVYSCMGERAEMSVSGRLPLKWVFEGQYQTARVCRYCALARVLEVA 170

The following BLAST results are available for this feature:
BLAST of Moc06g16050 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022404.12.6e-0433.90hypothetical protein SDJN02_16135, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Moc06g16050 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc06g16050 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc06g16050 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g16050.1Moc06g16050.1mRNA