Moc06g15730 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g15730
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Reverse transcriptase
Location	chr6: 12403880 .. 12406494 (-)
RNA-Seq Expression	Moc06g15730
Synteny	Moc06g15730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAACCCCCGTATGGGAGCACTCAATTCTTATCAGCGCTTCAGAAGAAAGCCGAGGAAGTGAAGGAACCTCTGGAACGTGGTCTGATGTATGTGGAAGCATGGGTCAATCAGAAAGCCGCAAAAAACACTATGGTAGATTCTGGCGCCACCCACAATTTCATGACAGAAACCGAGGCACGTCGGCTGAACTTGCGATGGGATAAAGACCCAGGAAAGATGAAAGCGGTCAACTCGGCCGCCCTCCCCATCATGGGAGTGCCAAAAGAGTCTCAGTAAAGCTAGGGACATGGAGTGGACAGGTCGACTTGTGATAGTGCGGATGGACGACTTCGACGTAGTATTGGGGATGGAATTTCTGCTGGAACACAAAGTCATCCCCATACCCCTCGCTAAGTGCCTGGTTGTAACGGGTTCCGATCCCACAATGTTCAGACAAGCATCAAACAACCAAGCGGAGTGAAGATGATATCAGCACTCCAACTAAAGAAAGGTCTCTCGCTCGTGACGAGCGACCTTTATGGTCATTCCTGTTGTGGAAGGCGAAAATTCTGAAGAGCCAGTTCCCAGAGAAATCCAGCGAGTCTTGGAGGTGTATGCCGATGTAATGCCAGACAACCTGCCCAAAAATCTACCTCCAAGACGGGGGATAGACCATGAGATTGAATTATTACCGGGGCGAAAAACCGCCCGCCAAGAACGCCTATCGGATGGCTCCTCCCGAGCTAGTTGAACTGAGGAAACAACTTGATGAATTACTGAATGCTGGATTCATCGCCCGGCTAAGGCTCCCTATGGGGCCACAGTCCTTTTTCAAAAGAAGAAAGACGGAAGTCTCCGCCTATGCATCGACTACCGAGCATTGAACAAACTCACAGTCCGCAACAAATACCCTTTGCCCATCATCACAGACCTGTTCGATCAACTTCATGGGGCAAAGTACTTCTCAAAGCTGGATCTGCGATCTGGATACTATCAGGTGCGCATCGCAAAAGAAGATGAACCGAAGACGACCTGCGTCACTCGTAGGGTTGATTGCTTTGAGCATTCGTGCCCTTCGGCCTTACGAATGCTCCTGCCACCTTCTGTACCTTAATGAACCAAGTGTTTCACAAATATCTCGACAAATTCGTGGTGGTTTACCTAGATGATATAGTCGTCTACAGTCCACCATGGAAGAACACCAGGTACATTTATAGCTTGTTTTCGAAAAGCTCAAACAGAACCAGTTGTATGTTAAACGGAAAAGTGTTCGTTTGCCCAAGAATGCATCAGTTTCTTGGGTCATATGATAGAATGTGGTCGAATAGGCATGTAGGATGGAAAGGTCAAAGCCATTCAAGAGTGGAAGATTTCGACGTCCATCACAAACTACGTTCATTCCTCGGATTAGCCAATTACTATAGGCGATTCGTGGAAGGATTCTCGAAACGGACCGGGCCCTTAACGGAATTACTAAAGAAGAACCAGAAGTGGAACTGGACCTCAGAATGTTAAGCCGCATTTGAGAGTTTGAAAAAGGCGATGATGGAGGGGCCGGTGTTGGGAATTGCAGACGTCACACGACCGTTCGAAGTCGAGACTGATGCGTCAGCCTTCGCCCTGGGAGGAGTGCTTCTCCAAGACGGTCACCCCATTGCATACGAGAGTCGGAAGTTGAATGATGCTGAAAGGAGGTATGCCGTCTCCGAGAAAGAGATGTTAGCAGTAGTCCACTGCTTGAGGGCCTGGAGGCAATATCTAACTAGGGGCCAAGTTCGTTGTCAAGACCGACAACAGCTCAGTCTGTCACTTTCTCAACCAACCGAAGTTGTCGTCCAAGCAAGCTAGGTGGCAAGAGTACCTTGCTAAGTTCGATTTTCAGTTCGAACATAAGCCCGGTCGAGCAAATCAGGCGACAGATGCCCTTAGCAGAAAGAGCGAACATGCGGCCCTGTGCATGTTAGCTCACCTAAAAGCGAGCAAGCTCACTGGATCCATTCGTGAAGCCATCAGAGAGAACTTACAAAATGACCCAGCTGCCCAAGCGATAATTCAGTTGGCCAACGAAGGGAAAACTAGACAGTTTTGGGTGGAGAATGAGCTCCTCTTCACCAAAGGTAACCTTTTGTATGTTCCCCGTTCTGGGAACCTAAGGAAGCTCCTACTTGGAGAATGTCACGACACGATGTGGGCAGGCCATGCTGGATGGCAGAGAACTTACGCGCTGTTAAAGAAAGGCTACTACTGGCCGAACTTGAGAGACGACGTGATGCAGTATATCGAAACGTGTCTCATCTGCCAACAAGACAAGGTGGAGCGAAATAAAATTGCAGGTTTACTGAAACCCCTGCCAATCCCATCACGACCGTGGGAGAGTGTGTCTCTCGACTTCATCACCCACCTACCTAAAGTCGGAGAGACAGAAGCGATCCTCGTGATAGTTGACCGGTTCTCTAAGTATGCTACCTTTATTCCAACTCCGAAGATGTGTTCGGCTGAAATGACTGCACAGTTATTTTTCAAGAATGTTGTGAAACTATGGGGTGTTCCTGAGAGCATCGTGAGCGACAGAGACAGCGCTCCATCGGAACATTTTGGACAGAACTTTTCTGCCTATTGGGATCCAATTTGA

mRNA sequence

ATGACAACCCCCGTATGGGAGCACTCAATTCTTATCAGCGCTTCAGAAGAAAGCCGAGGAAGTGAAGGAACCTCTGGAACGTGGTCTGATGTATGTGGAAGCATGGGTCAATCAGAAAGCCGCAAAAAACACTATGACAAGCATCAAACAACCAAGCGGAGTGAAGATGATATCAGCACTCCAACTAAAGAAAGGTCTCTCGCTCGTGACGAGCGACCTTTATGGTCATTCCTGTTGTGGAAGGCGAAAATTCTGAAGAGCCAGTTCCCAGAGAAATCCAGCGAGTCTTGGAGGTGGGCCAAGTTCGTTGTCAAGACCGACAACAGCTCAGTCTGTCACTTTCTCAACCAACCGAAGTTGTCGTCCAAGCAAGCTAGGTGGCAAGAGTACCTTGCTAAGTTCGATTTTCAGTTCGAACATAAGCCCGGTCGAGCAAATCAGGCGACAGATGCCCTTAGCAGAAAGAGCGAACATGCGGCCCTGTGCATGTTAGCTCACCTAAAAGCGAGCAAGCTCACTGGATCCATTCGTGAAGCCATCAGAGAGAACTTACAAAATGACCCAGCTGCCCAAGCGATAATTCAGTTGGCCAACGAAGGGAAAACTAGACAGTTTTGGGTGGAGAATGAGCTCCTCTTCACCAAAGGTAACCTTTTGTATGTTCCCCGTTCTGGGAACCTAAGGAAGCTCCTACTTGGAGAATGTCACGACACGATGTGGGCAGGCCATGCTGGATGGCAGAGAACTTACGCGCTGTTAAAGAAAGGCTACTACTGGCCGAACTTGAGAGACGACGTGATGCAGTATATCGAAACGTGTCTCATCTGCCAACAAGACAAGATGTGTTCGGCTGAAATGACTGCACAGTTATTTTTCAAGAATGTTGTGAAACTATGGGGTGTTCCTGAGAGCATCGTGAGCGACAGAGACAGCGCTCCATCGGAACATTTTGGACAGAACTTTTCTGCCTATTGGGATCCAATTTGA

Coding sequence (CDS)

ATGACAACCCCCGTATGGGAGCACTCAATTCTTATCAGCGCTTCAGAAGAAAGCCGAGGAAGTGAAGGAACCTCTGGAACGTGGTCTGATGTATGTGGAAGCATGGGTCAATCAGAAAGCCGCAAAAAACACTATGACAAGCATCAAACAACCAAGCGGAGTGAAGATGATATCAGCACTCCAACTAAAGAAAGGTCTCTCGCTCGTGACGAGCGACCTTTATGGTCATTCCTGTTGTGGAAGGCGAAAATTCTGAAGAGCCAGTTCCCAGAGAAATCCAGCGAGTCTTGGAGGTGGGCCAAGTTCGTTGTCAAGACCGACAACAGCTCAGTCTGTCACTTTCTCAACCAACCGAAGTTGTCGTCCAAGCAAGCTAGGTGGCAAGAGTACCTTGCTAAGTTCGATTTTCAGTTCGAACATAAGCCCGGTCGAGCAAATCAGGCGACAGATGCCCTTAGCAGAAAGAGCGAACATGCGGCCCTGTGCATGTTAGCTCACCTAAAAGCGAGCAAGCTCACTGGATCCATTCGTGAAGCCATCAGAGAGAACTTACAAAATGACCCAGCTGCCCAAGCGATAATTCAGTTGGCCAACGAAGGGAAAACTAGACAGTTTTGGGTGGAGAATGAGCTCCTCTTCACCAAAGGTAACCTTTTGTATGTTCCCCGTTCTGGGAACCTAAGGAAGCTCCTACTTGGAGAATGTCACGACACGATGTGGGCAGGCCATGCTGGATGGCAGAGAACTTACGCGCTGTTAAAGAAAGGCTACTACTGGCCGAACTTGAGAGACGACGTGATGCAGTATATCGAAACGTGTCTCATCTGCCAACAAGACAAGATGTGTTCGGCTGAAATGACTGCACAGTTATTTTTCAAGAATGTTGTGAAACTATGGGGTGTTCCTGAGAGCATCGTGAGCGACAGAGACAGCGCTCCATCGGAACATTTTGGACAGAACTTTTCTGCCTATTGGGATCCAATTTGA

Protein sequence

MTTPVWEHSILISASEESRGSEGTSGTWSDVCGSMGQSESRKKHYDKHQTTKRSEDDISTPTKERSLARDERPLWSFLLWKAKILKSQFPEKSSESWRWAKFVVKTDNSSVCHFLNQPKLSSKQARWQEYLAKFDFQFEHKPGRANQATDALSRKSEHAALCMLAHLKASKLTGSIREAIRENLQNDPAAQAIIQLANEGKTRQFWVENELLFTKGNLLYVPRSGNLRKLLLGECHDTMWAGHAGWQRTYALLKKGYYWPNLRDDVMQYIETCLICQQDKMCSAEMTAQLFFKNVVKLWGVPESIVSDRDSAPSEHFGQNFSAYWDPI

Homology

[Close]

BLAST of Moc06g15730 vs. NCBI nr
Match: XP_022155185.1 (uncharacterized protein LOC111022320 [Momordica charantia])

HSP 1 Score: 352.4 bits (903), Expect = 4.1e-93
Identity = 169/182 (92.86%), Postives = 174/182 (95.60%), Query Frame = 0


Query: 100  AKFVVKTDNSSVCHFLNQPKLSSKQARWQEYLAKFDFQFEHKPGRANQATDALSRKSEHA 159
            AKFVVKTDNSSVCHF NQPKLSSKQARWQEYLA+FDFQFEHKPGRANQA DALSRKSE A
Sbjct: 940  AKFVVKTDNSSVCHFFNQPKLSSKQARWQEYLAEFDFQFEHKPGRANQAADALSRKSEXA 999

Query: 160  ALCMLAHLKASKLTGSIREAIRENLQNDPAAQAIIQLANEGKTRQFWVENELLFTKGNLL 219
            ALCMLAHLKASKLTGSIREAIRENLQNDPAAQAIIQLANEG TRQF VEN+L FTKGN L
Sbjct: 1000 ALCMLAHLKASKLTGSIREAIRENLQNDPAAQAIIQLANEGXTRQFXVENDLXFTKGNXL 1059

Query: 220  YVPRSGNLRKLLLGECHDTMWAGHAGWQRTYALLKKGYYWPNLRDDVMQYIETCLICQQD 279
            YVPRSGNLRKLLLGECHDTMWAGHAGWQRTYALLKKGYYWP+LRDDVMQY +TCLICQQD
Sbjct: 1060 YVPRSGNLRKLLLGECHDTMWAGHAGWQRTYALLKKGYYWPSLRDDVMQYTKTCLICQQD 1119

Query: 280  KM 282
            K+
Sbjct: 1120 KV 1121

[Close]

BLAST of Moc06g15730 vs. NCBI nr
Match: XP_023537907.1 (uncharacterized protein LOC111798805 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 323.2 bits (827), Expect = 2.7e-84
Identity = 153/269 (56.88%), Postives = 189/269 (70.26%), Query Frame = 0


Query: 100  AKFVVKTDNSSVCHFLNQPKLSSKQARWQEYLAKFDFQFEHKPGRANQATDALSRKSEHA 159
            ++FVVKTDNS+ CHF +QPKL++KQARWQE LA+FDF+FEHK G++NQA DALSRK EHA
Sbjct: 1017 SQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADALSRKGEHA 1076

Query: 160  ALCMLAHLKASKLTGSIREAIRENLQNDPAAQAIIQLANEGKTRQFWVENELLFTKGNLL 219
            ALCMLAH+ +SK+ GS+R+ I+E+L  DP+A+A+++LA  GKTRQFWVE +LL TKGN L
Sbjct: 1077 ALCMLAHIHSSKIDGSMRDIIKEHLHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRL 1136

Query: 220  YVPRSGNLRKLLLGECHDTMWAGHAGWQRTYALLKKGYYWPNLRDDVMQYIETCLICQQD 279
            YVPR+G LRK L+ ECHDT+WAGH GWQRTYAL+KKGY+WPN+RDD+MQY +TCLICQQD
Sbjct: 1137 YVPRTGELRKKLIQECHDTLWAGHPGWQRTYALIKKGYFWPNMRDDIMQYTKTCLICQQD 1196

Query: 280  ----------------------------------------------------------KM 311
                                                                      K+
Sbjct: 1197 KVEKAKVSGLLEPLPVPTRPWESVSLDFITHLPKVGEYDAILVIVDRFSKYATFIPTPKL 1256

[Close]

BLAST of Moc06g15730 vs. NCBI nr
Match: KAA0060055.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 320.9 bits (821), Expect = 1.3e-83
Identity = 160/284 (56.34%), Postives = 189/284 (66.55%), Query Frame = 0


Query: 100 AKFVVKTDNSSVCHFLNQPKLSSKQARWQEYLAKFDFQFEHKPGRANQATDALSRKSEHA 159
           + FVVKTDNS+ CHF  QPKL+SKQARWQE+LA+FDF+FEHK G +NQA DALSRK EHA
Sbjct: 18  SSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALSRKQEHA 77

Query: 160 ALCMLAHLKASKLTGSIREAIRENLQNDPAAQAIIQLANEGKTRQFWVENELLFTKGNLL 219
           A+C+LAHL+ S++ GS+R+ +RE LQ D AAQ ++ LA  GKTRQFWVE +LL TKGN L
Sbjct: 78  AMCLLAHLQESEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKTRQFWVEEDLLVTKGNRL 137

Query: 220 YVPRSGNLRKLLLGECHDTMWAGHAGWQRTYALLKKGYYWPNLRDDVMQYIETCLICQQD 279
           YVP++GNLRK LL ECHDT+WAGH GWQRTYALLKKGY+WPN+RDDVMQY +TCLICQQD
Sbjct: 138 YVPKAGNLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQD 197

Query: 280 KM---------------------------------------------------------- 326
           K+                                                          
Sbjct: 198 KVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILVIIDRFPKYATFIPATKQ 257

[Close]

BLAST of Moc06g15730 vs. NCBI nr
Match: KAA0059106.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 320.9 bits (821), Expect = 1.3e-83
Identity = 160/284 (56.34%), Postives = 189/284 (66.55%), Query Frame = 0


Query: 100  AKFVVKTDNSSVCHFLNQPKLSSKQARWQEYLAKFDFQFEHKPGRANQATDALSRKSEHA 159
            + FVVKTDNS+ CHF  QPKL+SKQARWQE+LA+FDF+FEHK G +NQA DALSRK EHA
Sbjct: 817  SSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALSRKQEHA 876

Query: 160  ALCMLAHLKASKLTGSIREAIRENLQNDPAAQAIIQLANEGKTRQFWVENELLFTKGNLL 219
            A+C+LAHL+ S++ GS+R+ +RE LQ D AAQ ++ LA  GKTRQFWVE++L  TKGN L
Sbjct: 877  AICLLAHLQESEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKTRQFWVEDDLFVTKGNRL 936

Query: 220  YVPRSGNLRKLLLGECHDTMWAGHAGWQRTYALLKKGYYWPNLRDDVMQYIETCLICQQD 279
            YVPR+GNLRK LL ECHDT+WAGH GWQRTYALLKKGY+WPN+RDDVMQY +TCLICQQD
Sbjct: 937  YVPRAGNLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQD 996

Query: 280  KM---------------------------------------------------------- 326
            K+                                                          
Sbjct: 997  KVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPATKQ 1056

[Close]

BLAST of Moc06g15730 vs. NCBI nr
Match: TYK01597.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 320.5 bits (820), Expect = 1.7e-83
Identity = 160/284 (56.34%), Postives = 188/284 (66.20%), Query Frame = 0


Query: 100  AKFVVKTDNSSVCHFLNQPKLSSKQARWQEYLAKFDFQFEHKPGRANQATDALSRKSEHA 159
            + FVVKTDNS+ CHF  QPKL+SKQARWQE+LA+FDF+FEHK G  NQA DALSRK EHA
Sbjct: 1001 SSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSNNQAADALSRKQEHA 1060

Query: 160  ALCMLAHLKASKLTGSIREAIRENLQNDPAAQAIIQLANEGKTRQFWVENELLFTKGNLL 219
            A+C+LAHL+ S++ GS+R+ +RE LQ D AAQ ++ L   GKTRQFWVE +LL TKGN L
Sbjct: 1061 AICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRL 1120

Query: 220  YVPRSGNLRKLLLGECHDTMWAGHAGWQRTYALLKKGYYWPNLRDDVMQYIETCLICQQD 279
            YVPR+G+LRK LL ECHDT+WAGH GWQRTYALLKKGY+WPN+RDDVMQY +TCLICQQD
Sbjct: 1121 YVPRAGDLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQD 1180

Query: 280  KM---------------------------------------------------------- 326
            K+                                                          
Sbjct: 1181 KVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTTKQ 1240

[Close]

BLAST of Moc06g15730 vs. ExPASy Swiss-Prot
Match: Q8K259 (Gypsy retrotransposon integrase-like protein 1 OS=Mus musculus OX=10090 GN=Gin1 PE=2 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 5.7e-05
Identity = 21/53 (39.62%), Postives = 31/53 (58.49%), Query Frame = 0


Query: 228 RKLLLGECHDTMWAGHAGWQRTYALLKKGYYWPNLRDDVMQYIETCLICQQDK 281
           +K +L ECH+     H G  RT  L++ GYYW ++ +DV Q++  C  CQ  K
Sbjct: 70  KKKVLRECHENGPGVHHGISRTLTLVESGYYWTSVTNDVKQWVYACQHCQVAK 122

[Close]

BLAST of Moc06g15730 vs. ExPASy Swiss-Prot
Match: Q9NXP7 (Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens OX=9606 GN=GIN1 PE=1 SV=3)

HSP 1 Score: 49.3 bits (116), Expect = 9.7e-05
Identity = 20/53 (37.74%), Postives = 30/53 (56.60%), Query Frame = 0


Query: 228 RKLLLGECHDTMWAGHAGWQRTYALLKKGYYWPNLRDDVMQYIETCLICQQDK 281
           +K +L ECH+     H G  RT  L++  YYW ++ +DV Q++  C  CQ  K
Sbjct: 70  KKKVLRECHENDSGAHHGISRTLTLVESNYYWTSVTNDVKQWVYACQHCQVAK 122

[Close]

BLAST of Moc06g15730 vs. ExPASy Swiss-Prot
Match: Q4R6I1 (Gypsy retrotransposon integrase-like protein 1 OS=Macaca fascicularis OX=9541 GN=GIN1 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 9.7e-05
Identity = 20/53 (37.74%), Postives = 30/53 (56.60%), Query Frame = 0


Query: 228 RKLLLGECHDTMWAGHAGWQRTYALLKKGYYWPNLRDDVMQYIETCLICQQDK 281
           +K +L ECH+     H G  RT  L++  YYW ++ +DV Q++  C  CQ  K
Sbjct: 70  KKKVLRECHENDSGAHHGISRTLTLVESNYYWTSVTNDVKQWVYACQHCQVAK 122

[Close]

BLAST of Moc06g15730 vs. ExPASy Swiss-Prot
Match: Q5RBK0 (Gypsy retrotransposon integrase-like protein 1 OS=Pongo abelii OX=9601 GN=GIN1 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 9.7e-05
Identity = 20/53 (37.74%), Postives = 30/53 (56.60%), Query Frame = 0


Query: 228 RKLLLGECHDTMWAGHAGWQRTYALLKKGYYWPNLRDDVMQYIETCLICQQDK 281
           +K +L ECH+     H G  RT  L++  YYW ++ +DV Q++  C  CQ  K
Sbjct: 70  KKKVLRECHENDSGAHHGISRTLTLVESNYYWTSVTNDVKQWVYACQHCQVAK 122

[Close]

BLAST of Moc06g15730 vs. ExPASy Swiss-Prot
Match: Q66H30 (Gypsy retrotransposon integrase-like protein 1 OS=Rattus norvegicus OX=10116 GN=GIN1 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.8e-04
Identity = 20/53 (37.74%), Postives = 30/53 (56.60%), Query Frame = 0


Query: 228 RKLLLGECHDTMWAGHAGWQRTYALLKKGYYWPNLRDDVMQYIETCLICQQDK 281
           +K +L ECH+     H G  RT  L++  YYW ++ +DV Q++  C  CQ  K
Sbjct: 70  KKKVLRECHENGPGVHHGISRTLTLVESSYYWTSVTNDVKQWVYACQHCQVAK 122

[Close]

BLAST of Moc06g15730 vs. ExPASy TrEMBL
Match: A0A6J1DLQ6 (uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022320 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 2.0e-93
Identity = 169/182 (92.86%), Postives = 174/182 (95.60%), Query Frame = 0


Query: 100  AKFVVKTDNSSVCHFLNQPKLSSKQARWQEYLAKFDFQFEHKPGRANQATDALSRKSEHA 159
            AKFVVKTDNSSVCHF NQPKLSSKQARWQEYLA+FDFQFEHKPGRANQA DALSRKSE A
Sbjct: 940  AKFVVKTDNSSVCHFFNQPKLSSKQARWQEYLAEFDFQFEHKPGRANQAADALSRKSEXA 999

Query: 160  ALCMLAHLKASKLTGSIREAIRENLQNDPAAQAIIQLANEGKTRQFWVENELLFTKGNLL 219
            ALCMLAHLKASKLTGSIREAIRENLQNDPAAQAIIQLANEG TRQF VEN+L FTKGN L
Sbjct: 1000 ALCMLAHLKASKLTGSIREAIRENLQNDPAAQAIIQLANEGXTRQFXVENDLXFTKGNXL 1059

Query: 220  YVPRSGNLRKLLLGECHDTMWAGHAGWQRTYALLKKGYYWPNLRDDVMQYIETCLICQQD 279
            YVPRSGNLRKLLLGECHDTMWAGHAGWQRTYALLKKGYYWP+LRDDVMQY +TCLICQQD
Sbjct: 1060 YVPRSGNLRKLLLGECHDTMWAGHAGWQRTYALLKKGYYWPSLRDDVMQYTKTCLICQQD 1119

Query: 280  KM 282
            K+
Sbjct: 1120 KV 1121

[Close]

BLAST of Moc06g15730 vs. ExPASy TrEMBL
Match: A0A5A7UY33 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G00110 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 6.4e-84
Identity = 160/284 (56.34%), Postives = 189/284 (66.55%), Query Frame = 0


Query: 100  AKFVVKTDNSSVCHFLNQPKLSSKQARWQEYLAKFDFQFEHKPGRANQATDALSRKSEHA 159
            + FVVKTDNS+ CHF  QPKL+SKQARWQE+LA+FDF+FEHK G +NQA DALSRK EHA
Sbjct: 817  SSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALSRKQEHA 876

Query: 160  ALCMLAHLKASKLTGSIREAIRENLQNDPAAQAIIQLANEGKTRQFWVENELLFTKGNLL 219
            A+C+LAHL+ S++ GS+R+ +RE LQ D AAQ ++ LA  GKTRQFWVE++L  TKGN L
Sbjct: 877  AICLLAHLQESEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKTRQFWVEDDLFVTKGNRL 936

Query: 220  YVPRSGNLRKLLLGECHDTMWAGHAGWQRTYALLKKGYYWPNLRDDVMQYIETCLICQQD 279
            YVPR+GNLRK LL ECHDT+WAGH GWQRTYALLKKGY+WPN+RDDVMQY +TCLICQQD
Sbjct: 937  YVPRAGNLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQD 996

Query: 280  KM---------------------------------------------------------- 326
            K+                                                          
Sbjct: 997  KVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPATKQ 1056

[Close]

BLAST of Moc06g15730 vs. ExPASy TrEMBL
Match: A0A5A7V2E6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold160G00180 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 6.4e-84
Identity = 160/284 (56.34%), Postives = 189/284 (66.55%), Query Frame = 0


Query: 100 AKFVVKTDNSSVCHFLNQPKLSSKQARWQEYLAKFDFQFEHKPGRANQATDALSRKSEHA 159
           + FVVKTDNS+ CHF  QPKL+SKQARWQE+LA+FDF+FEHK G +NQA DALSRK EHA
Sbjct: 18  SSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALSRKQEHA 77

Query: 160 ALCMLAHLKASKLTGSIREAIRENLQNDPAAQAIIQLANEGKTRQFWVENELLFTKGNLL 219
           A+C+LAHL+ S++ GS+R+ +RE LQ D AAQ ++ LA  GKTRQFWVE +LL TKGN L
Sbjct: 78  AMCLLAHLQESEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKTRQFWVEEDLLVTKGNRL 137

Query: 220 YVPRSGNLRKLLLGECHDTMWAGHAGWQRTYALLKKGYYWPNLRDDVMQYIETCLICQQD 279
           YVP++GNLRK LL ECHDT+WAGH GWQRTYALLKKGY+WPN+RDDVMQY +TCLICQQD
Sbjct: 138 YVPKAGNLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQD 197

Query: 280 KM---------------------------------------------------------- 326
           K+                                                          
Sbjct: 198 KVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILVIIDRFPKYATFIPATKQ 257

[Close]

BLAST of Moc06g15730 vs. ExPASy TrEMBL
Match: A0A5A7T0E2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001310 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 8.3e-84
Identity = 161/284 (56.69%), Postives = 188/284 (66.20%), Query Frame = 0


Query: 100  AKFVVKTDNSSVCHFLNQPKLSSKQARWQEYLAKFDFQFEHKPGRANQATDALSRKSEHA 159
            + FVVKTDNS+ CHF  QPKL+SKQARWQE+LA+FDF+FEHK G +NQA DALSRK EHA
Sbjct: 1022 SSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALSRKQEHA 1081

Query: 160  ALCMLAHLKASKLTGSIREAIRENLQNDPAAQAIIQLANEGKTRQFWVENELLFTKGNLL 219
            A+C+LAHL+ S++ GSIR+ +RE LQ D AAQ ++ LA  GKTRQFWVE +LL TKGN L
Sbjct: 1082 AICLLAHLQGSEIGGSIRDTLREFLQKDHAAQNVMNLAKAGKTRQFWVEEDLLVTKGNRL 1141

Query: 220  YVPRSGNLRKLLLGECHDTMWAGHAGWQRTYALLKKGYYWPNLRDDVMQYIETCLICQQD 279
            YVPR+G LRK LL ECHDT+WAGH GWQRTYALLKKGY+WPN+RDDVMQY +TCLICQQD
Sbjct: 1142 YVPRAGGLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQD 1201

Query: 280  KM---------------------------------------------------------- 326
            K+                                                          
Sbjct: 1202 KVEKVTVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPATKQ 1261

[Close]

BLAST of Moc06g15730 vs. ExPASy TrEMBL
Match: A0A5D3BQE4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001890 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 8.3e-84
Identity = 160/284 (56.34%), Postives = 188/284 (66.20%), Query Frame = 0


Query: 100  AKFVVKTDNSSVCHFLNQPKLSSKQARWQEYLAKFDFQFEHKPGRANQATDALSRKSEHA 159
            + FVVKTDNS+ CHF  QPKL+SKQARWQE+LA+FDF+FEHK G  NQA DALSRK EHA
Sbjct: 1001 SSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSNNQAADALSRKQEHA 1060

Query: 160  ALCMLAHLKASKLTGSIREAIRENLQNDPAAQAIIQLANEGKTRQFWVENELLFTKGNLL 219
            A+C+LAHL+ S++ GS+R+ +RE LQ D AAQ ++ L   GKTRQFWVE +LL TKGN L
Sbjct: 1061 AICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRL 1120

Query: 220  YVPRSGNLRKLLLGECHDTMWAGHAGWQRTYALLKKGYYWPNLRDDVMQYIETCLICQQD 279
            YVPR+G+LRK LL ECHDT+WAGH GWQRTYALLKKGY+WPN+RDDVMQY +TCLICQQD
Sbjct: 1121 YVPRAGDLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQD 1180

Query: 280  KM---------------------------------------------------------- 326
            K+                                                          
Sbjct: 1181 KVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTTKQ 1240

The following BLAST results are available for this feature:

BLAST of Moc06g15730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155185.1	4.1e-93	92.86	uncharacterized protein LOC111022320 [Momordica charantia]	[more]
XP_023537907.1	2.7e-84	56.88	uncharacterized protein LOC111798805 [Cucurbita pepo subsp. pepo]	[more]
KAA0060055.1	1.3e-83	56.34	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0059106.1	1.3e-83	56.34	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK01597.1	1.7e-83	56.34	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Moc06g15730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8K259	5.7e-05	39.62	Gypsy retrotransposon integrase-like protein 1 OS=Mus musculus OX=10090 GN=Gin1 ...	[more]
Q9NXP7	9.7e-05	37.74	Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens OX=9606 GN=GIN1 P...	[more]
Q4R6I1	9.7e-05	37.74	Gypsy retrotransposon integrase-like protein 1 OS=Macaca fascicularis OX=9541 GN...	[more]
Q5RBK0	9.7e-05	37.74	Gypsy retrotransposon integrase-like protein 1 OS=Pongo abelii OX=9601 GN=GIN1 P...	[more]
Q66H30	2.8e-04	37.74	Gypsy retrotransposon integrase-like protein 1 OS=Rattus norvegicus OX=10116 GN=...	[more]

BLAST of Moc06g15730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLQ6	2.0e-93	92.86	uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5A7UY33	6.4e-84	56.34	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5A7V2E6	6.4e-84	56.34	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold16...	[more]
A0A5A7T0E2	8.3e-84	56.69	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5D3BQE4	8.3e-84	56.34	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]

BLAST of Moc06g15730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 226..280 e-value: 2.8E-19 score: 68.9
None	No IPR available	GENE3D	1.10.340.70		coord: 192..280 e-value: 3.1E-20 score: 74.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..65
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 283..317 coord: 102..190 coord: 221..280
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 93..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g15730.1	Moc06g15730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding