Moc06g15570 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g15570
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr6: 12292005 .. 12296223 (+)
RNA-Seq ExpressionMoc06g15570
SyntenyMoc06g15570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTCGGTCTTCCGGTTTTCCTCCTCGCACCTACCAAATTCGTTGATCCGGGACTAATACCTGCAAAACCAAATCGAGCTAAACCGGTGTGACTCTAGTCACACCGGCTCCGCTGCTTAAGTTAGCAAGAGTACAATGTAAATGTAGTCAACTTCTTCGCCCCATTTACCTCTAAGACTGGATCAATACTTATAGCGTGAAGTTGTTCCAGAACCTTCCGTAGCTAACCCTAATTCACCGTTGCAGGGCCTGGGCGAAATCGTCGATCGAAGATGGGGGATCACTGGCTGGGCCGTGGGCCGAGCACGGCTCGGGACCGAGCCCCGGGTCGGGGCCGAGCATCGGGTCGAGACCGAGCACCGGGCCGGGGCGGAGTACCGGGTCGGGACCGAGCCCTTCGTGGCTCAGTGGGCTTCCCTCCGGTCGCTTTCCTCGTTCTCTGCCCCGACGTTAGGTCCTTCTTTGGGCCGGCCCGTTATGTCACGAGCCGGTCTTCCCCAATCAGACTTCAACTTCTTATCTCGTTTCAGGTCGTTTTTGTTCTCCATAACAATTATAAATTAACATTTAAATAATATATTAATATTATTTAAATATTTAATATTATTTATATTAAATAATATTAATATAAATATTATAAAAATATCTCGGTTGGTTTCAATTTTGACACTAATTTTTAAAAGTTATACTTTTTTTTATCTAAATTTCGCATAAATAAATTGTTAAGACACCTAACAAAATTAAAAAGAAAAAAAAGTAGAGAGAGAATTGCAACATTTAATACAACAATGTAAAGGTGAAGAATCGAACTCATGACCTCTTAGTCGAAGACAGGTATCTAATCGAGTTATGTTGAGGTTGACAAAATTGAAACGTTTAAGATGTTGATAATGAAGCCAAAATAACAAAATGAAGAATGAGTTGATTGGGCCTAAATACAAAAGGCCCAATACATTTAGATTACTTTTTATTGAAGTTTAGTTATATAATTTTTATGTAAAAATTAGGGAAATACTAAGAAATGGCTACATATAAGATATCATAATGAAAAATGATTAAAATTTTCGTAAATTGGATATATGACCATACTTGATTTCCTTAATTTTAGGGGAGGGCTAGAATTCCATATTTACCCATCCGCACATTTTATGTCCATATTGCCCTTGCATCATTTCTCCATTTTACCCCTCCAGTTTTCAACCACCCACATTCCATAAATCACATTATTAAACTACGAAATCCCTAAAATCTCTCCATAACCAAACCAACAAAATTTCTACATTGTAATGCTACCAAATCTACATTATCAAACAACCGAATCTACCTATATCATTCAGACATTTTAAAAATATTATTAATTTGTTTCCAACATATAATCTAATTAAAATCTATAACAAACCTAACTAATTGGGTAGTACATTTCGTTGCAATCACATCTTCTAAATATTCTTACACTCATCAATTCCCATTTTTTATCAACCCAACAATCTCAAGTTCGTTGAGACATGGAGGGATCAACAAATCGAGCAGAGAATGACTTGTAAAGTTCGAGTCTCCGATTTCGTGATCGAAATTTATCTGGTAAGCATTTAGATTATAAGAAGAATTCGACTCAACAATACAAGAACTGAAGGTTTTTTTCTTCTCCTTGATAGTTTTCTGCCACAAAATATGTCATCCAAACCGTTTGTTGTCATATTCATTCGAAGTGAAGCTCTACTCTAGCTTGATTCTTTGGATGTGCGGATTGTGTCATTTGAATCTCATTTTAATTTGTGCATTTGAGTCCTAATTTGCAAAAATTAGAAGCAAACATTGGAATAATCGATATTTAAGGTAATATAATTATTGAGAGTTGAGAGAAAGTAGTAGAAGATAGGAAAGATGATTGGAAAGGAAAATGAGTCTCTTTCCTCATGAGTCATTATAGTCATATAATGAGCAGTCATATGATCTCATATCGTCTTTTGCAGCCAAGAAAAATCCAGGTAATATGTGTATATTTATTTACTCTGTCTTTATTTTGTCTAACGCATTTTTTCTTTATTCTGTCTATACGCTTATTTACCCTATATTAGATAGAGATTATCTTTAACCACAGTAAACACTAAGTAATGAAATGGTGCAAGCAAGTCACTCATTATAGTGTAAGTAAACTATTTTCAGTACCACGTAAGTATTATATATACGACGTGAAAGTACCTTAGCTTCATCCTCGTCCAGGTGCTTCACCACGTTTCTAGTTTGTCATTACCTTTATTTGTAACCTTTTTTGTATGTTCTTTTTTGATCGATTACATTTTTTTTTTGGCAAGAATGAGACGGTTCGTGAGTTTGGTATTAATTTTCGTGTCTCCCAATGTAGCTACCCCTCCATAGTTTTAAAAACAGTATTTGATTTTTCAATCTTATTTTTTCTACTCATTTTCCACTTTTATTTACGTTTTATTAGGCCATATATTTTTCATATTTTTCTACATTTTATATATATTTTTTTCAAATCATTCATTTAACCGATTTTATGTTTAAAATTTTGAAATTTCTAAATCTAGATTTTATTTTTGAAAATTTTGAACTTTAATTCACTATTTTATTGCCTAAAATTAAGCTATAGCAAAAAGTTGTTTCAAGGGTATTTTTGCCATAAAATTTAAGAGGTAATGGTAGGATAATTTAACTATTTTGGTGGGAAGGTATATTTGTCTATATTAAATTCTAGCATTGAAGTATAACTGTCTGATAGCCATTTTTGTGATATTGGATACTTTTGGCCATTTTTCAAGTAGAACTATTTAATATAGTCATTCCTCTAGTTGCCTCAAAAAATTATTATCCTTGCCGCCCCACTATTTTAACAACCCCAAGAGAGAGTGTTTTTGTGAGATTTTTATATAGAGGGTCATCTTCTTCATGGGGTTTTTGTGAGGGTTTTACAGAGAGTTCTGTGAGTGAAATTTTGTGAAAAATTTTATGTTCAACAACCTCCATTGAAGAGTTTCAAGAAGCTTGTAGAGTGATTCATGAGCATTTTTCTTTGAGAGAAAAGTGAGAGAACTCATTATGGAGCGTTTGTAAACTCTTGACGATTCTCCTGGCATTTAGTGGAACCTGCAATGGTAGCAGAGAACTGGACGTAGCCCACATTGGGTGAACCAGTATAACTCTGGTGTCGATTTCTCTTCACTATATTTTATTGTTCTTGTTGCTTGAGGTTTAGGTTGGTTTATCTACTCTTTGAGCATAGTTCCGATTTGATTTATTTCTGTTATAATTGGAACCAGAACCTGATCTGGGATTAGTTAGCATATATTGTCTGGAATTGTGATTGAGATAATATTTGTTAGCTTGTTTTATCCCTAACCAGTGGCAGAGCGGGGTTGAAGAACAATGGCAGGGGACGACAAATTGGTCACTTTTAATGGGTCAGATTTTCATTTTGGAAAAATCAGGTATTAGATTATTTGCACTCGAAAGAGTTGGAACTGCCATTAGAAGGAAAGCCGGATGATATGGGAGAAAAAGAATGGAAGAAGTTGGACAGGAAAGTGTTAGGTACGATTCGCCTGACATTAACTAAAAATGTTTAGAGTAGCGTGGCGAAGGAGACGACCACAATGGGGTTGATGAATGCCCTGGCCAACATGTATGAAAAACCCTCGGTAAATAATAAGGTGTATCTCGCAACTAAATTTTTTAATTTGAAAATGGCTGAATGTACATCTATTACTGCCTATTTAAATGAGTTTGATGCGTTGATTAACAAACTGGTAGCTGTTGATTTAGAATTCAGTGATGAAGTTTATGCTATTTTGTTATTAAGATCTTTGCCTGATAGTTGGGAATCCATTCGAGCTGCTATTTCGAATTCTTTGTGGGAAAGAGAAATTGAAATTTGAAGATGTTAGAGATGCAGCTCTTGCAGAAAAAATTCGCAAGAAGGACTCTGGTATCGCTTCTACTTCTGGTTCAGTATTGAATGTGGACAGAGGAAGAAATAATAACAGAGGTTATGGGAATCGAGGCAAGTCGAAAAACAATAGAAGCAGATCGAGAAACAACATGTTTGAGTGTTGGAATTGTGGTAAGAATGGACACTTGAAGAGGAATTACAAGGCCCCGAAAAAAAATGAAGGGAACGAAGCCGGTGCTGATGTTGCTGAGCAGATACATGATGCTTTGGTTCTGCAGTTGAGAGCGCTCATGACACATGGGTGA

mRNA sequence

ATGGATTTCGGTCTTCCGGTTTTCCTCCTCGCACCTACCAAATTCGTTGATCCGGGACTAATACCTGCAAAACCAAATCGAGCTAAACCGCGTGAAGTTGTTCCAGAACCTTCCGTAGCTAACCCTAATTCACCGTTGCAGGGCCTGGGCGAAATCGTCGATCGAAGATGGGGGATCACTGGCTGGGCCGTGGGCCGAGCACGGCTCGGGACCGAGCCCCGGGTCGGGGCCGAGCATCGGGTCGAGACCGAGCACCGGGCCGGGGCGGAGTACCGGGTCGGGACCGAGCCCTTCGTGGCTCAGTGGGCTTCCCTCCGGTCGCTTTCCTCGTTCTCTGCCCCGACGTTAGGTCCTTCTTTGGGCCGGCCCGTATTAGATTATTTGCACTCGAAAGAGTTGGAACTGCCATTAGAAGGAAAGCCGGATGATATGGGAGAAAAAGAATGGAAGAAGTTGGACAGGAAAGTGTTAGTTGGGAATCCATTCGAGCTGCTATTTCGAATTCTTTGTGGGAAAGAGAAATTGAAATTTGAAGATGTTAGAGATGCAGCTCTTGCAGAAAAAATTCGCAAGAAGGACTCTGGTATCGCTTCTACTTCTGGTTCAGTATTGAATGTGGACAGAGGAAGAAATAATAACAGAGGTTATGGGAATCGAGGCAAGTCGAAAAACAATAGAAGCAGATCGAGAAACAACATGTTTGAGTGTTGGAATTGTGGTAAGAATGGACACTTGAAGAGGAATTACAAGGCCCCGAAAAAAAATGAAGGGAACGAAGCCGGTGCTGATGTTGCTGAGCAGATACATGATGCTTTGGTTCTGCAGTTGAGAGCGCTCATGACACATGGGTGA

Coding sequence (CDS)

ATGGATTTCGGTCTTCCGGTTTTCCTCCTCGCACCTACCAAATTCGTTGATCCGGGACTAATACCTGCAAAACCAAATCGAGCTAAACCGCGTGAAGTTGTTCCAGAACCTTCCGTAGCTAACCCTAATTCACCGTTGCAGGGCCTGGGCGAAATCGTCGATCGAAGATGGGGGATCACTGGCTGGGCCGTGGGCCGAGCACGGCTCGGGACCGAGCCCCGGGTCGGGGCCGAGCATCGGGTCGAGACCGAGCACCGGGCCGGGGCGGAGTACCGGGTCGGGACCGAGCCCTTCGTGGCTCAGTGGGCTTCCCTCCGGTCGCTTTCCTCGTTCTCTGCCCCGACGTTAGGTCCTTCTTTGGGCCGGCCCGTATTAGATTATTTGCACTCGAAAGAGTTGGAACTGCCATTAGAAGGAAAGCCGGATGATATGGGAGAAAAAGAATGGAAGAAGTTGGACAGGAAAGTGTTAGTTGGGAATCCATTCGAGCTGCTATTTCGAATTCTTTGTGGGAAAGAGAAATTGAAATTTGAAGATGTTAGAGATGCAGCTCTTGCAGAAAAAATTCGCAAGAAGGACTCTGGTATCGCTTCTACTTCTGGTTCAGTATTGAATGTGGACAGAGGAAGAAATAATAACAGAGGTTATGGGAATCGAGGCAAGTCGAAAAACAATAGAAGCAGATCGAGAAACAACATGTTTGAGTGTTGGAATTGTGGTAAGAATGGACACTTGAAGAGGAATTACAAGGCCCCGAAAAAAAATGAAGGGAACGAAGCCGGTGCTGATGTTGCTGAGCAGATACATGATGCTTTGGTTCTGCAGTTGAGAGCGCTCATGACACATGGGTGA

Protein sequence

MDFGLPVFLLAPTKFVDPGLIPAKPNRAKPREVVPEPSVANPNSPLQGLGEIVDRRWGITGWAVGRARLGTEPRVGAEHRVETEHRAGAEYRVGTEPFVAQWASLRSLSSFSAPTLGPSLGRPVLDYLHSKELELPLEGKPDDMGEKEWKKLDRKVLVGNPFELLFRILCGKEKLKFEDVRDAALAEKIRKKDSGIASTSGSVLNVDRGRNNNRGYGNRGKSKNNRSRSRNNMFECWNCGKNGHLKRNYKAPKKNEGNEAGADVAEQIHDALVLQLRALMTHG
Homology
BLAST of Moc06g15570 vs. NCBI nr
Match: XP_022152845.1 (uncharacterized protein LOC111020469 [Momordica charantia])

HSP 1 Score: 211.1 bits (536), Expect = 1.3e-50
Identity = 132/248 (53.23%), Postives = 141/248 (56.85%), Query Frame = 0

Query: 124 VLDYLHSKELELPLEGKPDDMGEKEWKKLDRKVL-------------------------- 183
           VLDYLHSKELE PLEGKPDDMGEKEWKKLDRKVL                          
Sbjct: 577 VLDYLHSKELEFPLEGKPDDMGEKEWKKLDRKVLGTIRLTLTKNVQSSVAKTTTMGLMNA 636

Query: 184 VGNPFE-----------------------------------------------------L 243
           + N +E                                                     L
Sbjct: 637 LANMYEKASVNNKVYLATKFFNLKMAESTPITAHLNEFDVLINKLVAVDLEFSHEVYAIL 696

Query: 244 LFRIL--------------CGKEKLKFEDVRDAALAEKIRKKDSGIASTSGSVLNVDRGR 279
           L R L              C KEKLKFEDVRDAALAE+IR+KDSGIA TSGSVLNVDRGR
Sbjct: 697 LLRSLPDSWEPMRAAISNSCEKEKLKFEDVRDAALAEEIRRKDSGIAPTSGSVLNVDRGR 756

BLAST of Moc06g15570 vs. NCBI nr
Match: RVW30183.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 112.8 bits (281), Expect = 4.7e-21
Identity = 77/177 (43.50%), Postives = 102/177 (57.63%), Query Frame = 0

Query: 126 DYLHSKELELPLEG-KPDDMGEKEWKKLDRKVLVGNPFEL----------------LFRI 185
           DYL+ ++L LPL G KP+ M  +EW  LDR+VL      L                L + 
Sbjct: 28  DYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTADLMKA 87

Query: 186 L-----CGKEKLKFEDVRDAALAEKIRKKDSGIASTSGSVLNVD-RGRNNNR----GYGN 245
           L      GKEKLK+ D+RD  LAE+IR++D+G  S SGS LN++ RGR NNR    G  N
Sbjct: 88  LSVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNLETRGRGNNRNSNQGRSN 147

Query: 246 RGKSKNNRSRSRN-NMFECWNCGKNGHLKRNYKAPKKNEGNEAGADVAEQIHDALVL 275
              S  NRS+SR+    +CWNCGK GH KR  K+PKK   +++   V E++ DAL+L
Sbjct: 148 SRNSNRNRSKSRSGQQVQCWNCGKTGHFKRQCKSPKKKNEDDSANAVTEEVQDALLL 204

BLAST of Moc06g15570 vs. NCBI nr
Match: RVX04667.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 105.5 bits (262), Expect = 7.5e-19
Identity = 75/195 (38.46%), Postives = 102/195 (52.31%), Query Frame = 0

Query: 126 DYLHSKELELPLEG-KPDDMGEKEWKKLDRKVL--------------------------- 185
           DYL+ ++L LPL G KP+ M  +EW  LDR+VL                           
Sbjct: 28  DYLYGRKLHLPLLGTKPESMKVEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTADLMKA 87

Query: 186 ---------VGNPFELLFRIL---CGKEKLKFEDVRDAALAEKIRKKDSGIASTSGSVLN 245
                      N   ++   +    GKEKLK+ D+RD  LAE+IR++D+G  S SGS LN
Sbjct: 88  LSGMYEKPSANNKLGVMRMAVSNSTGKEKLKYNDIRDLILAEEIRQRDAGETSGSGSALN 147

Query: 246 VD-RGRNNNR----GYGNRGKSKNNRSRSRN-NMFECWNCGKNGHLKRNYKAPKKNEGNE 275
           ++ RGR NNR    G  N   S  NRS+SR+    +CWNCGK GH KR  K+PKK   ++
Sbjct: 148 LETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNCGKTGHFKRQCKSPKKKNEDD 207

BLAST of Moc06g15570 vs. NCBI nr
Match: CAN65867.1 (hypothetical protein VITISV_034935 [Vitis vinifera])

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-18
Identity = 76/204 (37.25%), Postives = 104/204 (50.98%), Query Frame = 0

Query: 126 DYLHSKELELPLEG-KPDDMGEKEWKKLDRKVL--------------------------- 185
           DYL+ ++L LPL G KP+ M  +EW  LDR+VL                           
Sbjct: 28  DYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTADLMKA 87

Query: 186 ------------------VGNPFELLFRIL---CGKEKLKFEDVRDAALAEKIRKKDSGI 245
                             + N +E +   +    GKEKLK+ D+RD  LAE+IR++D+G 
Sbjct: 88  LSEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGE 147

Query: 246 ASTSGSVLNVD-RGRNNNR----GYGNRGKSKNNRSRSRN-NMFECWNCGKNGHLKRNYK 275
            S SGS LN++ RGR NNR    G  N   S  NRS+SR+    +CWNCGK GH KR  K
Sbjct: 148 TSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNCGKTGHFKRQCK 207

BLAST of Moc06g15570 vs. NCBI nr
Match: RVX02202.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 104.0 bits (258), Expect = 2.2e-18
Identity = 76/197 (38.58%), Postives = 101/197 (51.27%), Query Frame = 0

Query: 126 DYLHSKELELPLEG-KPDDMGEKEWKKLDRKVLVGNPFEL----------------LFRI 185
           DYL+ ++L LPL G KP+ M  KEW  LDR+VL      L                L + 
Sbjct: 28  DYLYGRKLHLPLLGTKPESMKAKEWPLLDRQVLGVIRLTLSRSVTHNVVKEKTTADLMKA 87

Query: 186 L-------------------------CGKEKLKFEDVRDAALAEKIRKKDSGIASTSGSV 245
           L                          GKEKLK+ D+RD  LAE+IR++D+   S SGS 
Sbjct: 88  LSDSCSGRLDFFAKQLGGNEDAVSNSTGKEKLKYNDIRDLILAEEIRRRDASETSGSGSA 147

Query: 246 LNVD-RGRNNNR----GYGNRGKSKNNRSRSRN-NMFECWNCGKNGHLKRNYKAPKKNEG 275
           LN++ RGR NNR    G  N   S  NRS+SR+    +CWNCGK GH KR  K+PKK   
Sbjct: 148 LNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNCGKTGHFKRQCKSPKKKNE 207

BLAST of Moc06g15570 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.9e-04
Identity = 38/98 (38.78%), Postives = 52/98 (53.06%), Query Frame = 0

Query: 168 ILCGKEKLKFEDVRDAALA-EKIRKKDSGIAS---TSGSVLNVDRGRNNNRGYGNRGKSK 227
           IL GK  ++ +DV  A L  EK+RKK         T G   +  R  NN    G RGKSK
Sbjct: 163 ILHGKTTIELKDVTSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSK 222

Query: 228 NNRSRSRNNMFECWNCGKNGHLKRNYKAPKKNEGNEAG 262
           N   RS++ +  C+NC + GH KR+   P+K +G  +G
Sbjct: 223 N---RSKSRVRNCYNCNQPGHFKRDCPNPRKGKGETSG 257

BLAST of Moc06g15570 vs. ExPASy TrEMBL
Match: A0A6J1DF43 (uncharacterized protein LOC111020469 OS=Momordica charantia OX=3673 GN=LOC111020469 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 6.1e-51
Identity = 132/248 (53.23%), Postives = 141/248 (56.85%), Query Frame = 0

Query: 124 VLDYLHSKELELPLEGKPDDMGEKEWKKLDRKVL-------------------------- 183
           VLDYLHSKELE PLEGKPDDMGEKEWKKLDRKVL                          
Sbjct: 577 VLDYLHSKELEFPLEGKPDDMGEKEWKKLDRKVLGTIRLTLTKNVQSSVAKTTTMGLMNA 636

Query: 184 VGNPFE-----------------------------------------------------L 243
           + N +E                                                     L
Sbjct: 637 LANMYEKASVNNKVYLATKFFNLKMAESTPITAHLNEFDVLINKLVAVDLEFSHEVYAIL 696

Query: 244 LFRIL--------------CGKEKLKFEDVRDAALAEKIRKKDSGIASTSGSVLNVDRGR 279
           L R L              C KEKLKFEDVRDAALAE+IR+KDSGIA TSGSVLNVDRGR
Sbjct: 697 LLRSLPDSWEPMRAAISNSCEKEKLKFEDVRDAALAEEIRRKDSGIAPTSGSVLNVDRGR 756

BLAST of Moc06g15570 vs. ExPASy TrEMBL
Match: A0A438D407 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2203 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.3e-21
Identity = 77/177 (43.50%), Postives = 102/177 (57.63%), Query Frame = 0

Query: 126 DYLHSKELELPLEG-KPDDMGEKEWKKLDRKVLVGNPFEL----------------LFRI 185
           DYL+ ++L LPL G KP+ M  +EW  LDR+VL      L                L + 
Sbjct: 28  DYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTADLMKA 87

Query: 186 L-----CGKEKLKFEDVRDAALAEKIRKKDSGIASTSGSVLNVD-RGRNNNR----GYGN 245
           L      GKEKLK+ D+RD  LAE+IR++D+G  S SGS LN++ RGR NNR    G  N
Sbjct: 88  LSVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNLETRGRGNNRNSNQGRSN 147

Query: 246 RGKSKNNRSRSRN-NMFECWNCGKNGHLKRNYKAPKKNEGNEAGADVAEQIHDALVL 275
              S  NRS+SR+    +CWNCGK GH KR  K+PKK   +++   V E++ DAL+L
Sbjct: 148 SRNSNRNRSKSRSGQQVQCWNCGKTGHFKRQCKSPKKKNEDDSANAVTEEVQDALLL 204

BLAST of Moc06g15570 vs. ExPASy TrEMBL
Match: A0A0D2ZVN0 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 7.3e-20
Identity = 70/156 (44.87%), Postives = 92/156 (58.97%), Query Frame = 0

Query: 126 DYLHSKELELPLEGKPDDMGEKEWKKLDRK---VLVGNPFELLFRILCGKEKLKFEDVRD 185
           DYL+ K+L  PL  KP+ M + EW+ LDR+   V+   P  +        +KLKF DVRD
Sbjct: 28  DYLYEKKLHQPLSKKPEKMDQDEWELLDRQVMGVISWEPMRVAVSNYVSTQKLKFNDVRD 87

Query: 186 AALAEKIRKKDSGIASTSGSVLNVDRGRN---NNRGYGNRGKSKNNRSRSR-NNMFECWN 245
             L E++R+ DSG ASTS +    +RGRN   NNR  G R KS+N   +S+     ECWN
Sbjct: 88  RILGEEVRRIDSGEASTSSAFNVENRGRNPDRNNRSNG-RSKSRNGWGQSKFRQPTECWN 147

Query: 246 CGKNGHLKRNYKAPKKNEGNEAGA--DVAEQIHDAL 273
           CGK GH+K+N++AP K E N  G    V  +I DAL
Sbjct: 148 CGKTGHIKKNFRAPPKKEDNTRGGANAVTREIADAL 182

BLAST of Moc06g15570 vs. ExPASy TrEMBL
Match: A0A2N9IKQ5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52541 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.8e-19
Identity = 73/210 (34.76%), Postives = 107/210 (50.95%), Query Frame = 0

Query: 126 DYLHSKELELPLEG-KPDDMGEKEWKKLDRKVL--------------------------- 185
           DYL+ K+L LPL G KP+DM + EW  LDR+VL                           
Sbjct: 28  DYLYGKKLHLPLLGEKPEDMEDAEWTLLDRQVLGVIRLTLSRTVAHNVVKEKTTAELMTA 87

Query: 186 ---------VGNPFELLFRIL------------------CGKEKLKFEDVRDAALAEKIR 245
                      N   L+ +++                   GK KLK+ D+RD  L E++R
Sbjct: 88  LCGMYEKPSANNKVHLMKKLVQSKNGGSWEAMRMAVSNSAGKGKLKYNDIRDLILGEEVR 147

Query: 246 KKDSGIASTSGSVLNVD-RGRNNNRGYGNRGKSKNNRSRSRN---NMFECWNCGKNGHLK 277
           ++D+G  S+SGS LN++ RGR  +R Y NRG+SK+ + RS++      ECWNCGK GH++
Sbjct: 148 RRDAGETSSSGSALNLEARGRGKDRNY-NRGRSKSRKGRSKSKPGRQLECWNCGKTGHIR 207

BLAST of Moc06g15570 vs. ExPASy TrEMBL
Match: A0A438J6T4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_170 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.6e-19
Identity = 75/195 (38.46%), Postives = 102/195 (52.31%), Query Frame = 0

Query: 126 DYLHSKELELPLEG-KPDDMGEKEWKKLDRKVL--------------------------- 185
           DYL+ ++L LPL G KP+ M  +EW  LDR+VL                           
Sbjct: 28  DYLYGRKLHLPLLGTKPESMKVEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTADLMKA 87

Query: 186 ---------VGNPFELLFRIL---CGKEKLKFEDVRDAALAEKIRKKDSGIASTSGSVLN 245
                      N   ++   +    GKEKLK+ D+RD  LAE+IR++D+G  S SGS LN
Sbjct: 88  LSGMYEKPSANNKLGVMRMAVSNSTGKEKLKYNDIRDLILAEEIRQRDAGETSGSGSALN 147

Query: 246 VD-RGRNNNR----GYGNRGKSKNNRSRSRN-NMFECWNCGKNGHLKRNYKAPKKNEGNE 275
           ++ RGR NNR    G  N   S  NRS+SR+    +CWNCGK GH KR  K+PKK   ++
Sbjct: 148 LETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNCGKTGHFKRQCKSPKKKNEDD 207

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022152845.11.3e-5053.23uncharacterized protein LOC111020469 [Momordica charantia][more]
RVW30183.14.7e-2143.50Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVX04667.17.5e-1938.46Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
CAN65867.11.3e-1837.25hypothetical protein VITISV_034935 [Vitis vinifera][more]
RVX02202.12.2e-1838.58Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
P109781.9e-0438.78Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A6J1DF436.1e-5153.23uncharacterized protein LOC111020469 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A438D4072.3e-2143.50Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A0D2ZVN07.3e-2044.87Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1[more]
A0A2N9IKQ52.8e-1934.76Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52541 PE=4 SV=1[more]
A0A438J6T43.6e-1938.46Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..229
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..220
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..47
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 171..265
NoneNo IPR availablePANTHERPTHR34676:SF1ZINC FINGER, CCHC-TYPE, TUBBY C-TERMINAL-LIKE DOMAIN PROTEIN-RELATEDcoord: 171..265
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 231..254

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g15570.1Moc06g15570.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding