Moc06g14940 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g14940
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Locationchr6: 11714290 .. 11717112 (+)
RNA-Seq ExpressionMoc06g14940
SyntenyMoc06g14940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGAAGAGTACAAAGAGCTTTAAAGAGTATGCTCAAAGGTGGGGGGACACGGCAGCTCAAGTCCAACCTCCTTTAACGGATAATGAGCTATCTACCATGTTCATCAGTACCCTAAAACATCATTTCTATGATCGGATGATAGGAAGCGCTTCCACAAATTTCTCTGATATTATGACCATCGGAGAAAGGATCGAATACGGGGTTAAACATGGGCGAATAACCAGTACTGTCGAGGAGCCATTAACCGCAAAGAAGGCAAGTCATTCCAAGAAGAAGGAAGGTGAGGTGCAAATGGTGGGAGCAGACCGACACTCTTGGAAACAACAATCGTACGGTCGGACACCGCGATACACTTCGTATTATTACACAATCGTACGGGCAAGTTGTAGACATCGTATTTGGTCCGGCCCAGTTTTACTTTTATTAAGTTTAATTTTTAATTTTTTTGAATAATCATAACATAAGTTTTAATATAATTGCTTTAGTTTAAAAATGACATAAAGTGTTAATGTAAAGTTTTAATTAAATTAAATATTAAAAGTAGATTATATTTTAAAAAAGAATTTAGTTATTATTATTATTATTATTTTAAAATTGAGATTTTATATATATAAAAAAAAAGATAATGAAAATTTTTTTTTTTTCACTTTGTTCTCCTTTGATTTTTTTCTTAATTCAAACTTCTTTTCCTCACTCTTTCCCTCTTTTTATTTCTTACTGTTACATTACGTGTGTTTTTAAGGGAGGGTAGAAGGAAGACATTTACATGGAGAAAACCTAGAAAAGGAGGAAAAAATCAAATCATTCACTTTTTTTTCCCATCATCTTCTCTTCTTCTTCACCTACTCCGGCGACCTCCGACCACGATCAACTCCGCCCGTGGTGCAACTTAATTCTAGTGAACCCATTCGGATATTCACCTCATCGACCCGCAACATTCCGGGAACCTCTGTTTAAAACTACCTAGGTGAGAAGGTGAGTTCGGAAATAGAAAAAAAGGAAACTTTTAGCTTTAAACAGAGTATTTCTTTAAGAGAAGAAGAGAAAACGTTTTTGCAAAACTATATTATGAGGACTGAAAGTGTTTTTATTAAATAATAATAAGAAGAAAAACGTTGTTTTGGAAAGAGAGTTCTTTTTTTAATAAAGTTTTTTTTATTAAAAAGAACAAAGTTTTTTAAAAGGAAAGAAAATAAAAGATTTTGAAAATTTATTTAAAATAGTAAGATTTGTTTTCTTCCTTCCAGTATGATTTTTTTAAGATTTTGTTTTAGGTTTTAAATAATATTTTTTAAAAAGTAAGTAAGTAAATAATATTTTTAAGAATTTAAAAAAAATAAATTTGATTTTAAATAGAAGATTATTTTTTTTTAAATGAATTTCAAATCCCTAAAATAAAAAGTTTTTTTTTTTATTTTCATTAATATATTTTTTCTTTTTTTGTTAATACAAATTTCGAAAATCAACTTTCTTATTTAAAAAGACCCTTAATATCATATCTTATTTTATGGCACAGTTGCAAAAGTATTGGGTATTAAGTCTTCATGTGTACCTCAAAATTTTAAACAAAATTCAAAAATAAAAAGTTTGAATGATAAAAAAGAATTTTACGTTGCATCCTAAGGTGTTGGCACATTGGCAAGGCACTTGGGTATTAATACTCATGGCTCAAGTTTGAACGGGGTCGATATTGACCGCTCCGCGTCGCGATGATGTTGCGACAATGATATATTTTTTTTTTATGAATTTAAATTTATTGAACGAAATATGCTCATGAAATAAAGCTATATTATTTATTTTAAATGAAAAATAATTAAATTAACTTTTTAGTAAAAAAAATTATTATGAAATATTATATAAAATAAATACTTGAAAAGCGTGAGACTAGGACCACGATTGGTAGGGGGCACAAACATGCAAAATAAGGTGAAGACCACTACACCAAATATAATTGTGTATTCAATTTGATACAACTAGCAATAATCACGTGGAATTAACTGTTTATCTTCTAATAAGTATATTAACAATGATGTTTAATGAATTTAATTATATGTCACAAATATCTTTAAAATTAGTTCTGAAAATCTTCAAAGTTATTCTAAATTTTAAAATGGGTATAAAAAGTATTTTAATTAAATTATCACTTTTTATATTAATTTATGCAGTATTTTTTCGTATATTTATATATTATCTTTCCGAATATTTATAGAATTATTGTGTTTTTTTTACTTATTTAAAAAATTATCATTTGTATATATAAAAGTATTTTAAAGATTTATTATTACTACACTTCAATAATTAGAACGAAAACTTGATCCAATAAATTATAATTTAATATATTTGTATAAAGAATAATTTAAGTTAAAAGAGCTATTTTGTATAATTATTGGAAGGTGCAAATAAGGTTGAACTCACTCTACATAAAATGTAAAAGATTTTATAATGACAATAAATTTTTTTTTTTTGAAGTATGAAGCTATGTTATCTCTTTTTTTTTTCTTTATTGTCTATTTTGGTAAATAAACTGATCTTACATATTTTGGAAAATGAGACTGATAGCTTCTTTATCTAATCTCAAATCCTTAAAATGATTTTTTTTCAACATATTTATTTTGAAAACTATAAAAGCATAACAATAATACTTAATAAAAAACATCCAGATATGTGAATTGGTTTGGCATGTTTTGTATTATTTTATGATTTGGTGGTGATAGATCATTCACATACGCAAAGGATGCTCCATTTAACCGTGTAACTACCACCGTAAGATTACCTTATCTCAACAAACACCTTGACCTGAACAGTCATGTCACTTAA

mRNA sequence

ATGGAGAAGAAGAGTACAAAGAGCTTTAAAGAGTATGCTCAAAGGTGGGGGGACACGGCAGCTCAAGTCCAACCTCCTTTAACGGATAATGAGCTATCTACCATGTTCATCAGTACCCTAAAACATCATTTCTATGATCGGATGATAGGAAGCGCTTCCACAAATTTCTCTGATATTATGACCATCGGAGAAAGGATCGAATACGGGGTTAAACATGGGCGAATAACCAGTACTGTCGAGGAGCCATTAACCGCAAAGAAGGCAAGTCATTCCAAGAAGAAGGAAGGTGAGGTGCAAATGGTGGGAGCAGACCGACACTCTTGGAAACAACAATCATCATTCACATACGCAAAGGATGCTCCATTTAACCGTGTAACTACCACCGTAAGATTACCTTATCTCAACAAACACCTTGACCTGAACAGTCATGTCACTTAA

Coding sequence (CDS)

ATGGAGAAGAAGAGTACAAAGAGCTTTAAAGAGTATGCTCAAAGGTGGGGGGACACGGCAGCTCAAGTCCAACCTCCTTTAACGGATAATGAGCTATCTACCATGTTCATCAGTACCCTAAAACATCATTTCTATGATCGGATGATAGGAAGCGCTTCCACAAATTTCTCTGATATTATGACCATCGGAGAAAGGATCGAATACGGGGTTAAACATGGGCGAATAACCAGTACTGTCGAGGAGCCATTAACCGCAAAGAAGGCAAGTCATTCCAAGAAGAAGGAAGGTGAGGTGCAAATGGTGGGAGCAGACCGACACTCTTGGAAACAACAATCATCATTCACATACGCAAAGGATGCTCCATTTAACCGTGTAACTACCACCGTAAGATTACCTTATCTCAACAAACACCTTGACCTGAACAGTCATGTCACTTAA

Protein sequence

MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIMTIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQMVGADRHSWKQQSSFTYAKDAPFNRVTTTVRLPYLNKHLDLNSHVT
Homology
[Close]
BLAST of Moc06g14940 vs. NCBI nr
Match: XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])

HSP 1 Score: 205.3 bits (521), Expect = 3.6e-49
Identity = 101/111 (90.99%), Postives = 106/111 (95.50%), Query Frame = 0 

Query: 1   MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIM 60
           MEKKST+SFKEYAQRW DTAAQVQPPLTD ELS MFI+TLKH FYDRMIG+ASTNFSDIM
Sbjct: 155 MEKKSTESFKEYAQRWRDTAAQVQPPLTDKELSAMFINTLKHPFYDRMIGNASTNFSDIM 214

Query: 61  TIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQMVGADRHSWKQQ 112
           TIGERIEYGV+HGRITSTV+EPL AKKASHSKKKEGEVQMVGADRHSWKQQ
Sbjct: 215 TIGERIEYGVRHGRITSTVDEPLAAKKASHSKKKEGEVQMVGADRHSWKQQ 265

[Close]
BLAST of Moc06g14940 vs. NCBI nr
Match: XP_022147189.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia])

HSP 1 Score: 204.1 bits (518), Expect = 7.9e-49
Identity = 101/111 (90.99%), Postives = 104/111 (93.69%), Query Frame = 0 

Query: 1   MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIM 60
           MEKKSTKSFKEYAQRW DTAAQVQPPL D ELS MFI+TLKH FYDRMIGSASTNFSDIM
Sbjct: 195 MEKKSTKSFKEYAQRWRDTAAQVQPPLIDKELSAMFINTLKHPFYDRMIGSASTNFSDIM 254

Query: 61  TIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQMVGADRHSWKQQ 112
           TIGERIEYGV+HGRITST +EPL AKKASHSKKKEGEVQMVGADRHSWKQQ
Sbjct: 255 TIGERIEYGVRHGRITSTTDEPLAAKKASHSKKKEGEVQMVGADRHSWKQQ 305

[Close]
BLAST of Moc06g14940 vs. NCBI nr
Match: XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia])

HSP 1 Score: 174.5 bits (441), Expect = 6.7e-40
Identity = 86/104 (82.69%), Postives = 92/104 (88.46%), Query Frame = 0 

Query: 1   MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIM 60
           MEKKST+SFKEYAQRW DTAAQVQPPLTD ELS MFI+TLKH FYDRM+GSASTNFSDIM
Sbjct: 206 MEKKSTESFKEYAQRWRDTAAQVQPPLTDKELSXMFINTLKHPFYDRMVGSASTNFSDIM 265

Query: 61  TIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQMVGAD 105
            IGERIEYGV+HGRITST +EPL AKK SHSKKKEGE+  V  D
Sbjct: 266 AIGERIEYGVRHGRITSTADEPLAAKKTSHSKKKEGELAHVPVD 309

[Close]
BLAST of Moc06g14940 vs. NCBI nr
Match: XP_022157796.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia])

HSP 1 Score: 173.7 bits (439), Expect = 1.2e-39
Identity = 87/104 (83.65%), Postives = 92/104 (88.46%), Query Frame = 0 

Query: 1   MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIM 60
           MEK ST+SFKEYAQRW DTAAQVQPPLTD ELS MFI+TLKH FYDRMIGSASTNFSDIM
Sbjct: 264 MEKNSTESFKEYAQRWRDTAAQVQPPLTDKELSAMFINTLKHPFYDRMIGSASTNFSDIM 323

Query: 61  TIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQMVGAD 105
           TIGERIEYGV+H RITST +EPL AKKASHSKKKEGE+  V  D
Sbjct: 324 TIGERIEYGVRHKRITSTADEPLAAKKASHSKKKEGELTPVPVD 367

[Close]
BLAST of Moc06g14940 vs. NCBI nr
Match: XP_022155098.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia])

HSP 1 Score: 172.6 bits (436), Expect = 2.6e-39
Identity = 86/110 (78.18%), Postives = 94/110 (85.45%), Query Frame = 0 

Query: 1   MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIM 60
           MEKK+ +SFKEY QRW DTAAQ QPP TD ELS+MFI+TLKH FYDRMIGSAST+FSDI+
Sbjct: 268 MEKKTXESFKEYXQRWRDTAAQXQPPXTDKELSSMFINTLKHPFYDRMIGSASTSFSDIL 327

Query: 61  TIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQMVGADRHSWKQ 111
           TIGERIEYGV HGRITSTV E  T K  + SKKKEGEVQMVGADRH W+Q
Sbjct: 328 TIGERIEYGVXHGRITSTVGESSTXKXXTSSKKKEGEVQMVGADRHVWRQ 377

[Close]
BLAST of Moc06g14940 vs. ExPASy TrEMBL
Match: A0A6J1E2J7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.7e-49
Identity = 101/111 (90.99%), Postives = 106/111 (95.50%), Query Frame = 0 

Query: 1   MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIM 60
           MEKKST+SFKEYAQRW DTAAQVQPPLTD ELS MFI+TLKH FYDRMIG+ASTNFSDIM
Sbjct: 155 MEKKSTESFKEYAQRWRDTAAQVQPPLTDKELSAMFINTLKHPFYDRMIGNASTNFSDIM 214

Query: 61  TIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQMVGADRHSWKQQ 112
           TIGERIEYGV+HGRITSTV+EPL AKKASHSKKKEGEVQMVGADRHSWKQQ
Sbjct: 215 TIGERIEYGVRHGRITSTVDEPLAAKKASHSKKKEGEVQMVGADRHSWKQQ 265

[Close]
BLAST of Moc06g14940 vs. ExPASy TrEMBL
Match: A0A6J1D099 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.8e-49
Identity = 101/111 (90.99%), Postives = 104/111 (93.69%), Query Frame = 0 

Query: 1   MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIM 60
           MEKKSTKSFKEYAQRW DTAAQVQPPL D ELS MFI+TLKH FYDRMIGSASTNFSDIM
Sbjct: 195 MEKKSTKSFKEYAQRWRDTAAQVQPPLIDKELSAMFINTLKHPFYDRMIGSASTNFSDIM 254

Query: 61  TIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQMVGADRHSWKQQ 112
           TIGERIEYGV+HGRITST +EPL AKKASHSKKKEGEVQMVGADRHSWKQQ
Sbjct: 255 TIGERIEYGVRHGRITSTTDEPLAAKKASHSKKKEGEVQMVGADRHSWKQQ 305

[Close]
BLAST of Moc06g14940 vs. ExPASy TrEMBL
Match: A0A6J1CNY7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 3.3e-40
Identity = 86/104 (82.69%), Postives = 92/104 (88.46%), Query Frame = 0 

Query: 1   MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIM 60
           MEKKST+SFKEYAQRW DTAAQVQPPLTD ELS MFI+TLKH FYDRM+GSASTNFSDIM
Sbjct: 206 MEKKSTESFKEYAQRWRDTAAQVQPPLTDKELSXMFINTLKHPFYDRMVGSASTNFSDIM 265

Query: 61  TIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQMVGAD 105
            IGERIEYGV+HGRITST +EPL AKK SHSKKKEGE+  V  D
Sbjct: 266 AIGERIEYGVRHGRITSTADEPLAAKKTSHSKKKEGELAHVPVD 309

[Close]
BLAST of Moc06g14940 vs. ExPASy TrEMBL
Match: A0A6J1DZ90 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 5.6e-40
Identity = 87/104 (83.65%), Postives = 92/104 (88.46%), Query Frame = 0 

Query: 1   MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIM 60
           MEK ST+SFKEYAQRW DTAAQVQPPLTD ELS MFI+TLKH FYDRMIGSASTNFSDIM
Sbjct: 264 MEKNSTESFKEYAQRWRDTAAQVQPPLTDKELSAMFINTLKHPFYDRMIGSASTNFSDIM 323

Query: 61  TIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQMVGAD 105
           TIGERIEYGV+H RITST +EPL AKKASHSKKKEGE+  V  D
Sbjct: 324 TIGERIEYGVRHKRITSTADEPLAAKKASHSKKKEGELTPVPVD 367

[Close]
BLAST of Moc06g14940 vs. ExPASy TrEMBL
Match: A0A6J1DM29 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia OX=3673 GN=LOC111022231 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.2e-39
Identity = 86/110 (78.18%), Postives = 94/110 (85.45%), Query Frame = 0 

Query: 1   MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIM 60
           MEKK+ +SFKEY QRW DTAAQ QPP TD ELS+MFI+TLKH FYDRMIGSAST+FSDI+
Sbjct: 268 MEKKTXESFKEYXQRWRDTAAQXQPPXTDKELSSMFINTLKHPFYDRMIGSASTSFSDIL 327

Query: 61  TIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQMVGADRHSWKQ 111
           TIGERIEYGV HGRITSTV E  T K  + SKKKEGEVQMVGADRH W+Q
Sbjct: 328 TIGERIEYGVXHGRITSTVGESSTXKXXTSSKKKEGEVQMVGADRHVWRQ 377

The following BLAST results are available for this feature:
BLAST of Moc06g14940 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158986.13.6e-4990.99LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia][more]
XP_022147189.17.9e-4990.99LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia][more]
XP_022143495.16.7e-4082.69LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia][more]
XP_022157796.11.2e-3983.65LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia][more]
XP_022155098.12.6e-3978.18LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica ch... [more]
BLAST of Moc06g14940 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc06g14940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E2J71.7e-4990.99Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1[more]
A0A6J1D0993.8e-4990.99Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1[more]
A0A6J1CNY73.3e-4082.69Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1[more]
A0A6J1DZ905.6e-4083.65Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1[more]
A0A6J1DM291.2e-3978.18LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia... [more]
BLAST of Moc06g14940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g14940.1Moc06g14940.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071897 DNA biosynthetic process
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component GO:0030430 host cell cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0003887 DNA-directed DNA polymerase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity