Moc06g14060 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g14060
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionDUF4220 domain-containing protein
Locationchr6: 10988994 .. 10989940 (-)
RNA-Seq ExpressionMoc06g14060
SyntenyMoc06g14060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTTTCACGACCCGTGTCTGATGAACACAAAAAACGAATCTTCCAACAATTGAAGGAGAAGCTGGAGATGGAAGAAGAAGACAGGAAGTCGTTTGGTTGGTTTCTCAGAAAGCACAATTGTTATGATAAGTTCGGCAAGAGCTTCGAGTTGGATATTGACCACAGCATCATTGTGGGGCACATTGCAAAGGATATTTGCTATCACTCCGACCGAAAAGTTCAAGGTTCAAATTTTTCCGAAGATAGCAAATTGTTATCTGATTTTCTGACGTACCTTTTAGGGCATCGTCACTCCTTATTTTCGAGTGGGATGGCTTAAATAAGATTGTGTTCTACTGTTGAGGACGCCATTAATTTTCTTCAAGTTAGAGACTTGATTGAAACAGCTGCTGATGCTTGTATGAGTATGTTGGATTTAAGTCACAGATTTATCAGCTCCATTAAGATGTTCTTGAAGATGAAAAAAGTGGAGACAACTAATTAAAGCTTCAAGGGTTGGAAAAATGGGAGAAATGGGAAATAATTAGCCATGTTTGGGTCAAAATTCTCGCCAATATTTCGTGTGAATCTAAATGGTACAATCACGCCGAGCAGCTTGGACGCGCGCGAGGATCTACTGACACATGTCTGGTTTGAGCTCGAATGAGGATATCCCCTCCCCGGTTTGAGCTCCATGAGGTGCATAGTCGGGGCTTCCCTCCCATTTCCATTCGGAGATGATTCCCGCAACGTTTGCTAAATGATGTTGGCTACAATAATGAGTTTGTTGCAGATTGTTAGAAGCTCAAGAAGGAATCCAGGGTAGTGGCGACAGGCCATAAGAGATCATCTTCTATTTATGTGTCAGAATTTGGGGTTGCCAAGTGTTCACTGAGACAGAGAATGCACAGAGTAACTGCAGATGGTTCGCAAGGCGAGACCTTAGAGGACCAGCAACATTAA

mRNA sequence

ATGGCGGTTTCACGACCCGTGTCTGATGAACACAAAAAACGAATCTTCCAACAATTGAAGGAGAAGCTGGAGATGGAAGAAGAAGACAGGAAGTCGTTTGGTTGGTTTCTCAGAAAGCACAATTGTTATGATAAGTTCGGCAAGAGCTTCGAGTTGGATATTGACCACAGCATCATTGTGGGGCACATTGCAAAGGATATTTGCTATCACTCCGACCGAAAAGTTCAAGAATTTGGGGTTGCCAAGTGTTCACTGAGACAGAGAATGCACAGAGTAACTGCAGATGGTTCGCAAGGCGAGACCTTAGAGGACCAGCAACATTAA

Coding sequence (CDS)

ATGGCGGTTTCACGACCCGTGTCTGATGAACACAAAAAACGAATCTTCCAACAATTGAAGGAGAAGCTGGAGATGGAAGAAGAAGACAGGAAGTCGTTTGGTTGGTTTCTCAGAAAGCACAATTGTTATGATAAGTTCGGCAAGAGCTTCGAGTTGGATATTGACCACAGCATCATTGTGGGGCACATTGCAAAGGATATTTGCTATCACTCCGACCGAAAAGTTCAAGAATTTGGGGTTGCCAAGTGTTCACTGAGACAGAGAATGCACAGAGTAACTGCAGATGGTTCGCAAGGCGAGACCTTAGAGGACCAGCAACATTAA

Protein sequence

MAVSRPVSDEHKKRIFQQLKEKLEMEEEDRKSFGWFLRKHNCYDKFGKSFELDIDHSIIVGHIAKDICYHSDRKVQEFGVAKCSLRQRMHRVTADGSQGETLEDQQH
Homology
BLAST of Moc06g14060 vs. NCBI nr
Match: XP_022141971.1 (uncharacterized protein LOC111012216 [Momordica charantia])

HSP 1 Score: 97.4 bits (241), Expect = 7.7e-17
Identity = 48/85 (56.47%), Postives = 61/85 (71.76%), Query Frame = 0

Query: 1   MAVSRPVSDEHKKRIFQQLKEKLEMEEEDRKSFGWFLRKHNCYDKFGKSFELDIDHSIIV 60
           M  SR +SDE K RIFQQL +KLE+ EE+RK  GW LRKHNCY++ G S ELD D SI++
Sbjct: 412 MTASRNISDELKTRIFQQLTQKLEVNEENRKLPGWILRKHNCYNQLGWSLELDSDQSILL 471

Query: 61  GHIAKDICYHSDRKVQEFGVAKCSL 86
            HIA +ICYH D++ +    + CSL
Sbjct: 472 WHIATNICYHRDKETE---ASNCSL 493

BLAST of Moc06g14060 vs. NCBI nr
Match: XP_004139148.1 (uncharacterized protein LOC101222078 [Cucumis sativus] >KGN66604.1 hypothetical protein Csa_007023 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 3.0e-05
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 2   AVSRPVSDEHKKRIFQQLKEKLEMEEEDRKSFGWFLRKHNCYDKFGKSFELDIDHSIIVG 61
           +V RP+S+  +  IFQQLK+KL + +E    +G        Y++ G S +LD+D SI++ 
Sbjct: 393 SVQRPISNNLEAHIFQQLKQKLVLNQE--YDYG--------YNEIGWSLKLDLDQSILIW 452

Query: 62  HIAKDICYHSDRKVQE 78
           HIA D CYHS  K +E
Sbjct: 453 HIATDFCYHSSPKFKE 458

BLAST of Moc06g14060 vs. NCBI nr
Match: KAA0037446.1 (uncharacterized protein E6C27_scaffold277G00320 [Cucumis melo var. makuwa] >TYK01920.1 uncharacterized protein E5676_scaffold808G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-04
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 2   AVSRPVSDEHKKRIFQQLKEKLEMEEEDRKSFGWFLRKHNCYDKFGKSFELDIDHSIIVG 61
           +V RP+S+  +  IFQQLK+KL + +E            + Y++ G S +LD+D SI++ 
Sbjct: 394 SVQRPISNNLEAHIFQQLKKKLVLNQE----------YDSGYNEIGWSLKLDLDQSILLW 453

Query: 62  HIAKDICYHSDRKVQE 78
           HIA D CY+S  K +E
Sbjct: 454 HIATDFCYYSSPKFKE 459

BLAST of Moc06g14060 vs. NCBI nr
Match: XP_042519255.1 (uncharacterized protein LOC122093066 [Macadamia integrifolia])

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-04
Identity = 25/73 (34.25%), Postives = 47/73 (64.38%), Query Frame = 0

Query: 7   VSDEHKKRIFQQLKEKLEMEEEDRKSF-------GWFLRKHNCYDKFGKSFELDIDHSII 66
           VS++ K  I+QQ KE+++  +E+ KS         W ++++NC ++ G S +++ D SI+
Sbjct: 460 VSNDIKDFIYQQFKERVQTSDEEIKSAEFCNPRGKWVMKRNNCLEELGWSIDVEFDQSIL 519

Query: 67  VGHIAKDICYHSD 73
           + H+A D+CY+ D
Sbjct: 520 IWHVATDLCYYFD 532

BLAST of Moc06g14060 vs. NCBI nr
Match: XP_008458716.1 (PREDICTED: uncharacterized protein LOC103498043 [Cucumis melo])

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-04
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 2   AVSRPVSDEHKKRIFQQLKEKLEMEEEDRKSFGWFLRKHNCYDKFGKSFELDIDHSIIVG 61
           +V RP+S+  +  IFQQLK+KL + +E            + Y++ G S +LD+D SI++ 
Sbjct: 394 SVQRPISNNLEAHIFQQLKKKLVLNQE----------YDSGYNEIGWSLKLDLDQSILLW 453

Query: 62  HIAKDICYHSDRKVQE 78
           HIA D CY+S  K +E
Sbjct: 454 HIATDFCYYSSPKFKE 459

BLAST of Moc06g14060 vs. ExPASy TrEMBL
Match: A0A6J1CKT2 (uncharacterized protein LOC111012216 OS=Momordica charantia OX=3673 GN=LOC111012216 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.7e-17
Identity = 48/85 (56.47%), Postives = 61/85 (71.76%), Query Frame = 0

Query: 1   MAVSRPVSDEHKKRIFQQLKEKLEMEEEDRKSFGWFLRKHNCYDKFGKSFELDIDHSIIV 60
           M  SR +SDE K RIFQQL +KLE+ EE+RK  GW LRKHNCY++ G S ELD D SI++
Sbjct: 412 MTASRNISDELKTRIFQQLTQKLEVNEENRKLPGWILRKHNCYNQLGWSLELDSDQSILL 471

Query: 61  GHIAKDICYHSDRKVQEFGVAKCSL 86
            HIA +ICYH D++ +    + CSL
Sbjct: 472 WHIATNICYHRDKETE---ASNCSL 493

BLAST of Moc06g14060 vs. ExPASy TrEMBL
Match: A0A0A0LZZ2 (DUF4220 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G638510 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.5e-05
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 2   AVSRPVSDEHKKRIFQQLKEKLEMEEEDRKSFGWFLRKHNCYDKFGKSFELDIDHSIIVG 61
           +V RP+S+  +  IFQQLK+KL + +E    +G        Y++ G S +LD+D SI++ 
Sbjct: 393 SVQRPISNNLEAHIFQQLKQKLVLNQE--YDYG--------YNEIGWSLKLDLDQSILIW 452

Query: 62  HIAKDICYHSDRKVQE 78
           HIA D CYHS  K +E
Sbjct: 453 HIATDFCYHSSPKFKE 458

BLAST of Moc06g14060 vs. ExPASy TrEMBL
Match: A0A5D3BS41 (DUF4220 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00060 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-04
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 2   AVSRPVSDEHKKRIFQQLKEKLEMEEEDRKSFGWFLRKHNCYDKFGKSFELDIDHSIIVG 61
           +V RP+S+  +  IFQQLK+KL + +E            + Y++ G S +LD+D SI++ 
Sbjct: 394 SVQRPISNNLEAHIFQQLKKKLVLNQE----------YDSGYNEIGWSLKLDLDQSILLW 453

Query: 62  HIAKDICYHSDRKVQE 78
           HIA D CY+S  K +E
Sbjct: 454 HIATDFCYYSSPKFKE 459

BLAST of Moc06g14060 vs. ExPASy TrEMBL
Match: A0A1S3C8L7 (uncharacterized protein LOC103498043 OS=Cucumis melo OX=3656 GN=LOC103498043 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-04
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 2   AVSRPVSDEHKKRIFQQLKEKLEMEEEDRKSFGWFLRKHNCYDKFGKSFELDIDHSIIVG 61
           +V RP+S+  +  IFQQLK+KL + +E            + Y++ G S +LD+D SI++ 
Sbjct: 394 SVQRPISNNLEAHIFQQLKKKLVLNQE----------YDSGYNEIGWSLKLDLDQSILLW 453

Query: 62  HIAKDICYHSDRKVQE 78
           HIA D CY+S  K +E
Sbjct: 454 HIATDFCYYSSPKFKE 459

BLAST of Moc06g14060 vs. ExPASy TrEMBL
Match: A0A0E0CD22 (DUF4220 domain-containing protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04
Identity = 27/73 (36.99%), Postives = 45/73 (61.64%), Query Frame = 0

Query: 12  KKRIFQQLKEKLE--MEEEDRKSFG-----WFLRKHNCYDKFGKSFELDIDHSIIVGHIA 71
           K+ +F+QLKEK    ++    + FG     WFL +  CY + G S E++ D SII+ HIA
Sbjct: 487 KQLVFKQLKEKANSTVDPMSYRRFGDHRGQWFLHRMGCYQELGASVEVEFDESIILWHIA 546

Query: 72  KDICYHSDRKVQE 78
            D+C++ +++ Q+
Sbjct: 547 TDLCFYDEQQQQQ 559

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022141971.17.7e-1756.47uncharacterized protein LOC111012216 [Momordica charantia][more]
XP_004139148.13.0e-0542.11uncharacterized protein LOC101222078 [Cucumis sativus] >KGN66604.1 hypothetical ... [more]
KAA0037446.13.4e-0439.47uncharacterized protein E6C27_scaffold277G00320 [Cucumis melo var. makuwa] >TYK0... [more]
XP_042519255.13.4e-0434.25uncharacterized protein LOC122093066 [Macadamia integrifolia][more]
XP_008458716.13.4e-0439.47PREDICTED: uncharacterized protein LOC103498043 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CKT23.7e-1756.47uncharacterized protein LOC111012216 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A0A0LZZ21.5e-0542.11DUF4220 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G638510 PE=... [more]
A0A5D3BS411.6e-0439.47DUF4220 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A1S3C8L71.6e-0439.47uncharacterized protein LOC103498043 OS=Cucumis melo OX=3656 GN=LOC103498043 PE=... [more]
A0A0E0CD222.8e-0436.99DUF4220 domain-containing protein OS=Oryza meridionalis OX=40149 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g14060.1Moc06g14060.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane