Moc06g13970 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g13970
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr6: 10953006 .. 10954364 (+)
RNA-Seq ExpressionMoc06g13970
SyntenyMoc06g13970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTACTCGAATCCATTTACGATCCCGAGTTTCCAGACTCATCGCCCACTTCTACTCAGGTCGAGGCCGCCACTCGATCCTAAGACTTGTCATGGTATTTCCACGATTAAATAATATTTCATTCTAGTTGTTGCCACCACCAACACAACAAGTACTTGGGTTAGTACGAAGAAAAGAACTCCACACTGTATTTGTTACCTTGCACCCCTAAAAAATAAATGTGTAGTTGCCTCCTCGTCTTCCCTGCATAAAACACACAAAAAGTCAGCTCTTATTCGCTTTTAGTACAAGTGTTCAAATTTTAAGTCTTAATCAAGTCTCAATCAAAAACCAAAAGGGTAAAAAATTATATTTCTAAGATTTAGAGCATTAATATTCAAATTGAGAAATCTTTCCCAAAATCTATAAATTTAATTTATAAAAACAAACAAAAGTAAAATTAAATAATTTAATTCAAGGCTCCTAATCAAGAAATATCAAACTTCGAATTCACGAAAGAATTTGAAGATATAAATTTAAAGTTTAAGAAGTCTAACTTGAAAAGGTAGGACATTGTAGATGGACAAATATAGGGAACTTGTTTGGGGGTAAACGTACCCAAGACACGTGGAGGACCCTTATTAGTGTTTGAAGAAACTGAATAAAAAGGATTGCCTAGGTCCATCTCGGCCCTGCCGAGGAGACCGGGTTCGCCCGTTATAAAAGATTAAGTATGGGCACCAAGGTTCGACCTAACTGGGGTCCGACCTGCTCGGAACCCGACAGGTCCGATATGAGAAAAGAAATATAACCGCCGGTCGTGTGTGCTGTCGAATCCATCACCTATAAATAGAGGGCTTCATTTCACGCTCAGGTATCGAATCTCACCTCGAACTAAATACGGAATCCGATCTATACTGACTTGAGCGTCAGAGTATTTACCCTCTTGTGCAGGTCCACCCAGGGCTCAAGTCGGAACCGGAGACCGGGTTCGAGCTTTATTCGCGAAGAACCGTTGTGCAAACCCTTGCATAAACATTTGGCGCCGTCTGTGGGGAGATAAGATCTAAGTCATCCCGATCTAAGAAACATACGCAAAGATGGTGCAACCAGCAAGCTCTGTTAATACGACAGAACGGAGGGGTGTGAACGCTGATAATGGCACTCAGCGAGACCTCGACGCAAGAATAGTCGAGGACCAGGTCCGAGCAGGGCAAGAGGGAGATCTGCCGCACAGATCTGCCCACCATGCAAACCAAGAGTTACCCCCTGCTCACCCGAAACCCTCACAGGCCAACCGAGGCCGAGGTGGGACCTCGAGAAAGACCTCCCAAAGGGCCAACCAGGTAGCAGACCCTGAAGCTTTGTCTACTCTCTAG

mRNA sequence

ATGGTACTCGAATCCATTTACGATCCCGAGTTTCCAGACTCATCGCCCACTTCTACTCAGGTCCATCTCGGCCCTGCCGAGGAGACCGGGTTCGCCCGTTATAAAAGATTAAGTATGGGCACCAAGGTTCGACCTAACTGGGGTCCGACCTGCTCGGAACCCGACAGGTCCACCCAGGGCTCAAGTCGGAACCGGAGACCGGAACGGAGGGGTGTGAACGCTGATAATGGCACTCAGCGAGACCTCGACGCAAGAATAGTCGAGGACCAGGTCCGAGCAGGGCAAGAGGGAGATCTGCCGCACAGATCTGCCCACCATGCAAACCAAGAGTTACCCCCTGCTCACCCGAAACCCTCACAGGCCAACCGAGGCCGAGGTGGGACCTCGAGAAAGACCTCCCAAAGGGCCAACCAGGTAGCAGACCCTGAAGCTTTGTCTACTCTCTAG

Coding sequence (CDS)

ATGGTACTCGAATCCATTTACGATCCCGAGTTTCCAGACTCATCGCCCACTTCTACTCAGGTCCATCTCGGCCCTGCCGAGGAGACCGGGTTCGCCCGTTATAAAAGATTAAGTATGGGCACCAAGGTTCGACCTAACTGGGGTCCGACCTGCTCGGAACCCGACAGGTCCACCCAGGGCTCAAGTCGGAACCGGAGACCGGAACGGAGGGGTGTGAACGCTGATAATGGCACTCAGCGAGACCTCGACGCAAGAATAGTCGAGGACCAGGTCCGAGCAGGGCAAGAGGGAGATCTGCCGCACAGATCTGCCCACCATGCAAACCAAGAGTTACCCCCTGCTCACCCGAAACCCTCACAGGCCAACCGAGGCCGAGGTGGGACCTCGAGAAAGACCTCCCAAAGGGCCAACCAGGTAGCAGACCCTGAAGCTTTGTCTACTCTCTAG

Protein sequence

MVLESIYDPEFPDSSPTSTQVHLGPAEETGFARYKRLSMGTKVRPNWGPTCSEPDRSTQGSSRNRRPERRGVNADNGTQRDLDARIVEDQVRAGQEGDLPHRSAHHANQELPPAHPKPSQANRGRGGTSRKTSQRANQVADPEALSTL
Homology
[Close]
BLAST of Moc06g13970 vs. NCBI nr
Match: XP_022156638.1 (uncharacterized protein LOC111023488 [Momordica charantia])

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-08
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 0 

Query: 68  ERRGVNADNGTQRDLDARIVEDQVRAGQEGDLPHRSAHHANQELPPAHPKPSQANRGRGG 127
           ERR +N +N  Q +LDA++ E+Q +AGQE D P RS  +AN  LPPAHP+  +ANRGRGG
Sbjct: 12  ERRALNGNNDAQHELDAKVTEEQTKAGQEVDPPRRSTRNANTILPPAHPRSGKANRGRGG 71

[Close]
BLAST of Moc06g13970 vs. NCBI nr
Match: XP_022159327.1 (uncharacterized protein LOC111025738 [Momordica charantia])

HSP 1 Score: 55.1 bits (131), Expect = 6.1e-04
Identity = 34/81 (41.98%), Postives = 47/81 (58.02%), Query Frame = 0 

Query: 68  ERRGVNADNGTQRDLDARIVEDQVRAGQEGDLPHRSAHHANQELPPAHPKPSQANRGRGG 127
           +RR + A++G QR++ A +VE Q+  G   +   RSA     +L PAHPKP +ANRGRGG
Sbjct: 12  DRRALVANDGHQREVGAEVVEGQIHEGLGTEPFCRSARITTPDLSPAHPKPFKANRGRGG 71

Query: 128 TSRKTSQRANQVADPEALSTL 149
            SR+T+  A      E    L
Sbjct: 72  ASRRTTLGAAPAPSRENFDAL 92

[Close]
BLAST of Moc06g13970 vs. ExPASy TrEMBL
Match: A0A6J1DR60 (uncharacterized protein LOC111023488 OS=Momordica charantia OX=3673 GN=LOC111023488 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.9e-09
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 0 

Query: 68  ERRGVNADNGTQRDLDARIVEDQVRAGQEGDLPHRSAHHANQELPPAHPKPSQANRGRGG 127
           ERR +N +N  Q +LDA++ E+Q +AGQE D P RS  +AN  LPPAHP+  +ANRGRGG
Sbjct: 12  ERRALNGNNDAQHELDAKVTEEQTKAGQEVDPPRRSTRNANTILPPAHPRSGKANRGRGG 71

[Close]
BLAST of Moc06g13970 vs. ExPASy TrEMBL
Match: A0A6J1DZJ1 (uncharacterized protein LOC111025738 OS=Momordica charantia OX=3673 GN=LOC111025738 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.9e-04
Identity = 34/81 (41.98%), Postives = 47/81 (58.02%), Query Frame = 0 

Query: 68  ERRGVNADNGTQRDLDARIVEDQVRAGQEGDLPHRSAHHANQELPPAHPKPSQANRGRGG 127
           +RR + A++G QR++ A +VE Q+  G   +   RSA     +L PAHPKP +ANRGRGG
Sbjct: 12  DRRALVANDGHQREVGAEVVEGQIHEGLGTEPFCRSARITTPDLSPAHPKPFKANRGRGG 71

Query: 128 TSRKTSQRANQVADPEALSTL 149
            SR+T+  A      E    L
Sbjct: 72  ASRRTTLGAAPAPSRENFDAL 92

The following BLAST results are available for this feature:
BLAST of Moc06g13970 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022156638.11.8e-0856.67uncharacterized protein LOC111023488 [Momordica charantia][more]
XP_022159327.16.1e-0441.98uncharacterized protein LOC111025738 [Momordica charantia][more]
BLAST of Moc06g13970 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc06g13970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DR608.9e-0956.67uncharacterized protein LOC111023488 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1DZJ12.9e-0441.98uncharacterized protein LOC111025738 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
BLAST of Moc06g13970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..148
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..148
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g13970.1Moc06g13970.1mRNA