Moc06g13830 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g13830
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr6: 10877082 .. 10879110 (+)
RNA-Seq ExpressionMoc06g13830
SyntenyMoc06g13830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAGTTCATCTAGCGATTCGTCGTCTGGGTCATCTTGCTCTTCTAGCACAGATAATGTCTTAGGGGTCCCAAACTTAGCTTCTGCCTCGGGAAATCCTTGTGTAGATTATAGCTGGGCAGACCCTAACACAGCTTCCACCTCAGGAAATCTCACTGCTGGTCCGGTAGTCAAGCTTCCTCCCTCGACTTGCTCGGTAGTTAGACTAGCCGAGCTTCGTAGGACCTACCTCATCCCTGATTTTATAGAGCTCAGGGTGCCTAACGTCGGCAAATCTCTCGAGGACCCTCCTCCGAGCTTCGTTAGTTTCTATCATCCGATGTTTAGTAGGGGGGTTAGGCTTCCACTTCATCCTTTCATCCAGAGGTTCCTTAGTGCAGTCAACCTCACCCAACTCAACTCTCTCCCAACGATTGGTCCACTGTGCTTGGGGCTTATGTTCTATGGTAGACCATCAGGGACGAGGATGAGGATAGGCTCACGGTAGATCAGCTTTTAGCGACCTATACCGTCAAAGTCTCCAACGAGGGGGAGGGTCAGTACTACCTCTTTGCTTGGTGGAACGTAGGTCAGCTTATTAGAAATACCTCTTCTAACAAAAACTAGAAGGAGTGTTGGTTCCTCGTCTCCAGCGATTGACTCGTGAGGAATGAAGGGGGTGAGCCGATCTATCATGTCCCAATAGAGTTCGGAGACGTAGGTGAGTGTCTTAGGTCGAGCTAGGTTTTTCTTTTCTTTTTACTTTCGTGCCTTTGTTTCTGACGACGCTTCATGGTACAGCTCTACCATCTACCGTTTCGAAGATCAGCAACAAGTCGTGGGAGATCATCAAGCACGCTCAGGGTCGGAGTTGAAGTACGCGCTGTAGAGTGAAGCACTCGTTTCAAACTCCCACCTCTTCTCCAGTGGCCTCAGTCCGTACGACCAGCCGGACGAGCTCAAGAAGCTTCCTTAGCCTCGGCAGCGCAGGTCGGAAAAATGCAAGGCTCCTGAAGGTAAGCTCGGCTTTAGCACTTGGACTCACATTCATAAACTTTTTAACTAACCTCGGCTTCTTTTTAGAGATGGCCTCTAAATTCCTCGCACTCAACAGCACAAAGCGATAGCGTGCTTCAACCCCGGCTGCCCCACCGGCGCCTCCTCAAGTTCGTCGTAGAACGAGCAGTGCCGATGTCCCGACCCCCGGGCTGGTTAATCTGGCCAAGCTCCAGGCCCTCCAAGCTCAGCCCTTGCAGACTGTCGCAGGGGGCGAGGGGTCAGCTTCCCCTTTGAAGCGGAAGGAAACGAGCGAGGGACGCACCTCAATCTGAGGAGGTTACCTCCAAGTCTCCGTCTCCCCCTATCCTGGTCGACTCGGAGGAGGGGTCCCTACAAGGTCAGCAATTAGGCGACGAGGTCCGACTTCTCTTCAGGCTCGCCTTCTCCCGTTCGAACATTCATGCCTTCACGACGAAGATGCGGTCCTCGAGTTCTCGCCGGATGGAGCAATCTGTCCAAGCGCTTGAGAACCCTGTAGAGGCAGTAAGGAGGACTTTGGCTTTTGTTGCAGAGGTAGCTTCGAGCTCGTTCTTCCTTTTCCTCTTTCTCTTTTCTTATTGCTCTAACATCGTTCTTTCGCAGCTGCACTATCACGCCAGCCTGTCGACATCCATGATGGGTTCCGAGCTTGAAGGTCGGGACCTGATGGAGGAGGAGACCCGTGCCTTATACGAGTGGAGGATTGCGGAGCTTGAAGCTGAGGTTGACCAAGCTCGAGCCAAGAAGGAGGTGGAGGTTGACAGGTCAAGGCTCTAATCGCCCAAGCCCGCGCCGAGCTGCAAAATGCCAGGGGACGAGCCGAGACTGTGGAAAAAGGATGGAAGGAAGCCCAGCAGAATCTGGCGAGCTGGGCCTTCTTGGAGAAGAAGATAAAAGAATTCCCCGAGTTCGACGGCTTGGCGCACGTTATGGCGGACAAGGGCTTCTACTACGCCATCGACAGGCTCAAAACTGCTTGTTCGAAGGAGGCCATTGCTGCCGCCGAGTAG

mRNA sequence

ATGAGTAGTTCATCTAGCGATTCGTCGTCTGGGTCATCTTGCTCTTCTAGCACAGATAATGTCTTAGGGGTCCCAAACTTAGCTTCTGCCTCGGGAAATCCTTGTGTAGATTATAGCTGGGCAGACCCTAACACAGCTTCCACCTCAGGAAATCTCACTGCTGGTCCGGTAGTCAAGCTTCCTCCCTCGACTTGCTCGGTAGTTAGACTAGCCGAGCTTCGTAGGACCTACCTCATCCCTGATTTTATAGAGCTCAGGGTGCCTAACGTCGGCAAATCTCTCGAGGACCCTCCTCCGAGCTTCGTTAGTTTCTATCATCCGATGTTTAGTAGGGGGGTTAGGCTTCCACTTCATCCTTTCATCCAGAGGGACGAGGATGAGGATAGGCTCACGGTAGATCAGCTTTTAGCGACCTATACCGTCAAAGTCTCCAACGAGGGGGAGGGTCAGTACTACCTCTTTGCTTGGTGGAACGTAGCTCTACCATCTACCGTTTCGAAGATCAGCAACAAGTCGTGGGAGATCATCAAGCACGCTCAGGTGGCCTCAGTCCGTACGACCAGCCGGACGAGCTCAAGAAGCTTCCTTAGCCTCGGCAGCGCAGGTCGGAAAAATGCAAGGCTCCTGAAGCGTGCTTCAACCCCGGCTGCCCCACCGGCGCCTCCTCAAGTTCGTCGTAGAACGAGCAGTGCCGATGTCCCGACCCCCGGGCTGGTTAATCTGGCCAAGCTCCAGGCCCTCCAAGCTCAGCCCTTGCAGACTTCTCCGTCTCCCCCTATCCTGGTCGACTCGGAGGAGGGGTCCCTACAAGGTCAGCAATTAGGCGACGAGGTCCGACTTCTCTTCAGGCTCGCCTTCTCCCGTTCGAACATTCATGCCTTCACGACGAAGATGCGGTCCTCGAGTTCTCGCCGGATGGAGCAATCTGTCCAAGCGCTTGAGAACCCTGTAGAGGCAGTAAGGAGGACTTTGGCTTTTGTTGCAGAGCTGCACTATCACGCCAGCCTGTCGACATCCATGATGGGTTCCGAGCTTGAAGGTCGGGACCTGATGGAGGAGGAGACCCGTGCCTTATACGAGTGGAGGATTGCGGAGCTTGAAGCTGAGCTGCAAAATGCCAGGGGACGAGCCGAGACTGTGGAAAAAGGATGGAAGGAAGCCCAGCAGAATCTGGCGAGCTGGGCCTTCTTGGAGAAGAAGATAAAAGAATTCCCCGAGTTCGACGGCTTGGCGCACGTTATGGCGGACAAGGGCTTCTACTACGCCATCGACAGGCTCAAAACTGCTTGTTCGAAGGAGGCCATTGCTGCCGCCGAGTAG

Coding sequence (CDS)

ATGAGTAGTTCATCTAGCGATTCGTCGTCTGGGTCATCTTGCTCTTCTAGCACAGATAATGTCTTAGGGGTCCCAAACTTAGCTTCTGCCTCGGGAAATCCTTGTGTAGATTATAGCTGGGCAGACCCTAACACAGCTTCCACCTCAGGAAATCTCACTGCTGGTCCGGTAGTCAAGCTTCCTCCCTCGACTTGCTCGGTAGTTAGACTAGCCGAGCTTCGTAGGACCTACCTCATCCCTGATTTTATAGAGCTCAGGGTGCCTAACGTCGGCAAATCTCTCGAGGACCCTCCTCCGAGCTTCGTTAGTTTCTATCATCCGATGTTTAGTAGGGGGGTTAGGCTTCCACTTCATCCTTTCATCCAGAGGGACGAGGATGAGGATAGGCTCACGGTAGATCAGCTTTTAGCGACCTATACCGTCAAAGTCTCCAACGAGGGGGAGGGTCAGTACTACCTCTTTGCTTGGTGGAACGTAGCTCTACCATCTACCGTTTCGAAGATCAGCAACAAGTCGTGGGAGATCATCAAGCACGCTCAGGTGGCCTCAGTCCGTACGACCAGCCGGACGAGCTCAAGAAGCTTCCTTAGCCTCGGCAGCGCAGGTCGGAAAAATGCAAGGCTCCTGAAGCGTGCTTCAACCCCGGCTGCCCCACCGGCGCCTCCTCAAGTTCGTCGTAGAACGAGCAGTGCCGATGTCCCGACCCCCGGGCTGGTTAATCTGGCCAAGCTCCAGGCCCTCCAAGCTCAGCCCTTGCAGACTTCTCCGTCTCCCCCTATCCTGGTCGACTCGGAGGAGGGGTCCCTACAAGGTCAGCAATTAGGCGACGAGGTCCGACTTCTCTTCAGGCTCGCCTTCTCCCGTTCGAACATTCATGCCTTCACGACGAAGATGCGGTCCTCGAGTTCTCGCCGGATGGAGCAATCTGTCCAAGCGCTTGAGAACCCTGTAGAGGCAGTAAGGAGGACTTTGGCTTTTGTTGCAGAGCTGCACTATCACGCCAGCCTGTCGACATCCATGATGGGTTCCGAGCTTGAAGGTCGGGACCTGATGGAGGAGGAGACCCGTGCCTTATACGAGTGGAGGATTGCGGAGCTTGAAGCTGAGCTGCAAAATGCCAGGGGACGAGCCGAGACTGTGGAAAAAGGATGGAAGGAAGCCCAGCAGAATCTGGCGAGCTGGGCCTTCTTGGAGAAGAAGATAAAAGAATTCCCCGAGTTCGACGGCTTGGCGCACGTTATGGCGGACAAGGGCTTCTACTACGCCATCGACAGGCTCAAAACTGCTTGTTCGAAGGAGGCCATTGCTGCCGCCGAGTAG

Protein sequence

MSSSSSDSSSGSSCSSSTDNVLGVPNLASASGNPCVDYSWADPNTASTSGNLTAGPVVKLPPSTCSVVRLAELRRTYLIPDFIELRVPNVGKSLEDPPPSFVSFYHPMFSRGVRLPLHPFIQRDEDEDRLTVDQLLATYTVKVSNEGEGQYYLFAWWNVALPSTVSKISNKSWEIIKHAQVASVRTTSRTSSRSFLSLGSAGRKNARLLKRASTPAAPPAPPQVRRRTSSADVPTPGLVNLAKLQALQAQPLQTSPSPPILVDSEEGSLQGQQLGDEVRLLFRLAFSRSNIHAFTTKMRSSSSRRMEQSVQALENPVEAVRRTLAFVAELHYHASLSTSMMGSELEGRDLMEEETRALYEWRIAELEAELQNARGRAETVEKGWKEAQQNLASWAFLEKKIKEFPEFDGLAHVMADKGFYYAIDRLKTACSKEAIAAAE
Homology
[Close]
BLAST of Moc06g13830 vs. NCBI nr
Match: XP_022159063.1 (uncharacterized protein LOC111025502, partial [Momordica charantia])

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-06
Identity = 42/127 (33.07%), Postives = 58/127 (45.67%), Query Frame = 0 

Query: 62  PSTCSVVRLAELRRTYLIPDFIELRVPNVGKSLEDPPPSFVSFYHPMFSRGVRLPLHPFI 121
           PS      L  LRR + IP+ I LR+P  G+  ++PP  +V+ Y  MF  G+RLPLHPF+
Sbjct: 48  PSRIPEHYLGSLRRGFAIPENILLRLPEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFV 107

Query: 122 Q--------------------------------RDEDEDRL-TVDQLLATYTVKVSNEGE 156
           Q                                RD +E  L  VDQLLA +  K   +  
Sbjct: 108 QEFLFRTGLAPAQVAPNGWGVIFALAILFWLRARDSEEAELXDVDQLLACFEAKRIAKKP 167

[Close]
BLAST of Moc06g13830 vs. NCBI nr
Match: MBQ7425224.1 (hypothetical protein [Lachnospiraceae bacterium])

HSP 1 Score: 60.5 bits (145), Expect = 4.3e-05
Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 0 

Query: 60  LPPSTCSVVRLAELRRTYLIPDFIELRVPNVGKSLEDPPPSFVSFYHPMFSRGVRLPLHP 119
           +P S C+V  LA+LR  Y IP++I L +P+ G  +  PPP  +  +   F  GVRLPLHP
Sbjct: 57  IPDSVCTVDTLAKLREEYKIPEYITLSLPHRGYDVYTPPPDRLLIHKAAFECGVRLPLHP 116

Query: 120 FIQR 124
            ++R
Sbjct: 117 TLRR 120

[Close]
BLAST of Moc06g13830 vs. ExPASy TrEMBL
Match: A0A6J1DXS5 (uncharacterized protein LOC111025502 OS=Momordica charantia OX=3673 GN=LOC111025502 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-06
Identity = 42/127 (33.07%), Postives = 58/127 (45.67%), Query Frame = 0 

Query: 62  PSTCSVVRLAELRRTYLIPDFIELRVPNVGKSLEDPPPSFVSFYHPMFSRGVRLPLHPFI 121
           PS      L  LRR + IP+ I LR+P  G+  ++PP  +V+ Y  MF  G+RLPLHPF+
Sbjct: 48  PSRIPEHYLGSLRRGFAIPENILLRLPEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFV 107

Query: 122 Q--------------------------------RDEDEDRL-TVDQLLATYTVKVSNEGE 156
           Q                                RD +E  L  VDQLLA +  K   +  
Sbjct: 108 QEFLFRTGLAPAQVAPNGWGVIFALAILFWLRARDSEEAELXDVDQLLACFEAKRIAKKP 167

The following BLAST results are available for this feature:
BLAST of Moc06g13830 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022159063.12.3e-0633.07uncharacterized protein LOC111025502, partial [Momordica charantia][more]
MBQ7425224.14.3e-0543.75hypothetical protein [Lachnospiraceae bacterium][more]
BLAST of Moc06g13830 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc06g13830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DXS51.1e-0633.07uncharacterized protein LOC111025502 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
BLAST of Moc06g13830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 356..383
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 209..232

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g13830.1Moc06g13830.1mRNA