Moc06g13520 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g13520
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr6: 10579835 .. 10581537 (-)
RNA-Seq Expression	Moc06g13520
Synteny	Moc06g13520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCACGTAAAGAGGTCGGAACTGACGACCCGGGGCCGACGCTAAGTACTGCTCGGCCCCTAGGTGTTCTCGGCCATCGGCTGAAAGCGCCGGTGGTTCTCCCAACCTTTGTGCAGACCGATCTGGTTCTACCCTATCTTGACCCTCGATCCGACATTAGGCCCACGACAAAACACACGGGCCCAGAAGTCCAGATCTCTTGGGCACACTAGGATTTGACTTGTGTAATTCCTAAAAAGATTAGGATTCAACTTCTATAAATACGAGGGTAAACCAAATCTTAAAGGTATGCTGAATTACCCTACTCTCCATACTTGACTACTCTGATTTTGACTTAAGCATCGGAGCCTGTGTGGCAAGAGCCATACCGATCTTTAGTGCTCTTCTGTTTTGCAGGTCTCGTTGATCAATTATATTATAAAAGATTGATGCAAATTTGGCAGAATTCTAGGAGGCTAAATTTCTGTATCAACAATTGGTGTCGTTTGTGGGGATGACTAAAAGCCAATAGTAGATCAACAATGAATTAACCGAGAACTACTCGGATTCGAGGAGGTACAGGGTAAAGCGAATCGACAAGTTTTGAGGCAGGACCCAGAACAAACGAATTTACAAATTCCAGGACAGATCCTAGATAAGATAAGTTGATAATTGTCATCCAAGTAGAATGATGAATCAAGCAGGGGTCTTGCTTGAGGAAGCTTCAAAGGAGAAAAGCCAATGAGTTTCAAGACAGGGAGAACAACATGTCCAGAGCCCTAATAAGATCATCGAGGGTGGACGACAAGGTCTTGATGGTGAAATGAGAACATGTCATGCCAGTAGTTCAACGTCTCCAGTAAACGATCACTTAACCACCAGAAGGATGAGAGGAGCCATAGAATTTCTCAATTCTGAAACAAGGTACTTATTAGATCTGCGTTCACGTCGACGAATCTCAGTTTTTGATGTAGTTGCAATATGTTTGCTTTTTTTCTTCGAGATTGGGTTGGTTTTCCGTACCTTACACTTCTGCTGAGTCTAACGAGGCTCAGGTGTGGCCAGCGGGCAGAACGAGGAGAGGGCCCGTCAATCATAACACCGCAATCGAAAAAGCGTGTTCCCTTCAGATAACACGCATCATAGGCCATCCTCGACCTTCTTTGTTTTTTATGAAAAAGAAATCCAATCTCGATCTCCGAAAGCGTTTTCCTTCCCCTCCCTTTGTCGAGCCTTTCCTGAATAATCTCATTTTTCAATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTTAGATTAGTCAACATTTCTATGTTTCGATGCAACAGCAAGATGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCGCAGTAGTCCTGAGGCAGCAAGATGTATGGTATAGGGCTCCCTATTTTCTCTCCTAACAAGTCTTTGATAGATTTCGAGTCGGGAATAGAGTTGTGGCTTAACGATAGAGAGCATATAGTTCTTTGTTCATCCCTAAATCGGGCACCTTTTGGGTGTGAGATTCTCGTTTAACCTCTGTATTCATCTTATAGCCAGTCATCAATTGGAAGCGGGCAAGATGGTGATGAATTGCGATTGGTCCAAACCTTCGACCAACGACTTATTGCGACCCGCCCAGAATGGCCATACATACTAAGACCTTATTCACATAGCAAAGAAAGGCCGAATGGAAGGCGGTAG

mRNA sequence

ATGAAACCACGTAAAGAGGTCGGAACTGACGACCCGGGGCCGACGCTAAGTACTGCTCGGCCCCTAGGTGTTCTCGGCCATCGGCTGAAAGCGCCGGTGGTTCTCCCAACCTTTGTGCAGACCGATCTGGGAGAACAACATGTCCAGAGCCCTAATAAGATCATCGAGGGTGGACGACAAGGTCTTGATGGTGAAATGAGAACATGTCATGCCAGTAGTTCAACGTCTCCAGTAAACGATCACTTAACCACCAGAAGGATGAGAGGAGCCATAGAATTTCTCAATTCTGAAACAAGATTGGGTTGGTTTTCCGTACCTTACACTTCTGCTGAGTCTAACGAGGCTCAGTCATCAATTGGAAGCGGGCAAGATGGTGATGAATTGCGATTGGTCCAAACCTTCGACCAACGACTTATTGCGACCCGCCCAGAATGGCCATACATACTAAGACCTTATTCACATAGCAAAGAAAGGCCGAATGGAAGGCGGTAG

Coding sequence (CDS)

ATGAAACCACGTAAAGAGGTCGGAACTGACGACCCGGGGCCGACGCTAAGTACTGCTCGGCCCCTAGGTGTTCTCGGCCATCGGCTGAAAGCGCCGGTGGTTCTCCCAACCTTTGTGCAGACCGATCTGGGAGAACAACATGTCCAGAGCCCTAATAAGATCATCGAGGGTGGACGACAAGGTCTTGATGGTGAAATGAGAACATGTCATGCCAGTAGTTCAACGTCTCCAGTAAACGATCACTTAACCACCAGAAGGATGAGAGGAGCCATAGAATTTCTCAATTCTGAAACAAGATTGGGTTGGTTTTCCGTACCTTACACTTCTGCTGAGTCTAACGAGGCTCAGTCATCAATTGGAAGCGGGCAAGATGGTGATGAATTGCGATTGGTCCAAACCTTCGACCAACGACTTATTGCGACCCGCCCAGAATGGCCATACATACTAAGACCTTATTCACATAGCAAAGAAAGGCCGAATGGAAGGCGGTAG

Protein sequence

MKPRKEVGTDDPGPTLSTARPLGVLGHRLKAPVVLPTFVQTDLGEQHVQSPNKIIEGGRQGLDGEMRTCHASSSTSPVNDHLTTRRMRGAIEFLNSETRLGWFSVPYTSAESNEAQSSIGSGQDGDELRLVQTFDQRLIATRPEWPYILRPYSHSKERPNGRR

Homology

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BLAST of Moc06g13520 vs. NCBI nr
Match: KAF9660770.1 (hypothetical protein SADUNF_SadunfMtG0008600 [Salix dunnii] >KAG6736888.1 hypothetical protein POTOM_060178 [Populus tomentosa])

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-10
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 115 AQSSIGSGQDGDELRLVQTFDQRLIATRPEWPYILRPYSHSKERPNGR 163
           +QSSIGS Q+ D+LRLVQTFD RLIATRPE P ILRPYSHS+ERP+GR
Sbjct: 89  SQSSIGSRQNVDKLRLVQTFDPRLIATRPECPSILRPYSHSEERPSGR 136

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BLAST of Moc06g13520 vs. NCBI nr
Match: PNT57229.1 (hypothetical protein POPTR_001G288100, partial [Populus trichocarpa])

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-08
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 120 GSGQDGDELRLVQTFDQRLIATRPEWPYILRPYSHSKERPNGR 163
           GS Q+ D+LRLVQTFD RLIATRPE P ILRPYSHS+ERP+GR
Sbjct: 9   GSRQNVDKLRLVQTFDLRLIATRPECPSILRPYSHSEERPSGR 51

[Close]

BLAST of Moc06g13520 vs. ExPASy TrEMBL
Match: U5GWZ5 (Uncharacterized protein (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_001G288100 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.7e-09
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 120 GSGQDGDELRLVQTFDQRLIATRPEWPYILRPYSHSKERPNGR 163
           GS Q+ D+LRLVQTFD RLIATRPE P ILRPYSHS+ERP+GR
Sbjct: 9   GSRQNVDKLRLVQTFDLRLIATRPECPSILRPYSHSEERPSGR 51

[Close]

BLAST of Moc06g13520 vs. ExPASy TrEMBL
Match: A0A494G918 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.1e-07
Identity = 34/48 (70.83%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 115 AQSSIGSGQDGDELRLVQTFDQRLIATRPEWPYILRPYSHSKERPNGR 163
           +QSSIG GQDGDELRL      RLIA  PE PY LRPYSHS+ERP+GR
Sbjct: 59  SQSSIGGGQDGDELRL------RLIAACPECPYRLRPYSHSEERPSGR 100

The following BLAST results are available for this feature:

BLAST of Moc06g13520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF9660770.1	1.3e-10	79.17	hypothetical protein SADUNF_SadunfMtG0008600 [Salix dunnii] >KAG6736888.1 hypoth...	[more]
PNT57229.1	2.0e-08	79.07	hypothetical protein POPTR_001G288100, partial [Populus trichocarpa]	[more]

BLAST of Moc06g13520 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g13520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
U5GWZ5	9.7e-09	79.07	Uncharacterized protein (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_001G2...	[more]
A0A494G918	3.1e-07	70.83	Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1	[more]

BLAST of Moc06g13520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g13520.1	Moc06g13520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion