Moc06g13500 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g13500
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Location	chr6: 10554703 .. 10562594 (+)
RNA-Seq Expression	Moc06g13500
Synteny	Moc06g13500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACTTCTATTATTGCACTCCTAGCCGTGGAAAAACTTAACGACAATAATTACAAACAATGGAAATCGAATCTAAACACTATACTCGTGATAGATGATCTTAGGTTCGTCTTGCAAGAGGATTGTCCTCAAGCTCCTGCGCCTAACGCCACTGTGGCGGTGCGCAACATCTATGACATATGGATCAAGGCCAATTACAAGGCTAAGGTCTACATCTTGGCGAGCATATCTGATGTGCTTGCTAAGAAGCACGAGGACACAGTCACCGCTAAGGAAATCATGGACTCGCTGCAGAGTATGTTTAGACAACCGTTTTCACAGGCTCGACATGATGCCCTTAAGTTCATTTACAACTCCCACATGAAGGAGGGCTCATCAGTGCGAGAACACGTTCTCAACCTGATGGTCCACTTCAACGTGGCGGAGTCGAACATGACTGTTATAGACGAGCAGACTCAGGTTAGCTTTATTCTGAAATCTCTTCCGAAGAGTTTCCTATAATTCTGCAGCAATGCGGTTATGAATAAGCTGAAATACACTCTTACCATGCTCTTAAATGAGCTATAGATTTACCAGTATCTTATGAAAAATTTAGGGACTGGAAGGGGACGCAAACGTTACCACCTCGAAAAAGTTCCACCGAGGTTCGACCTCTAGAGCCAAGTCTGTGGCATCTTCTTCTGGAAGTAAGTTTTAAAAAGAATAAAGTCACTGGTAAGGGGCCTAGACCTGATCCCACTACTGCCACTACCAAGAAGGGCAAGGTGATAAGGCAATCCTACTTCTCAGCCCAATGATCCAAGCTTTTGTTGAGCAAGAACCCTTAGATCAAAGAAATTAACACCTCCTTAAACAAGTTAGAATCAACCAAGAGAAAGGCTAGAAATTGATTACCTCTATGATCAAAGATCAAGAAGTAAGAATGGAGATCTTATTCTAGAATGAGTCATTCCACAATCAAACTTGATCAAGGCTGGATTGAATGACTCAAAATGCAATCTATCACAAGAATTGCAAGAAACCTTAGAAATGGCAATGAGATTTCTAAAGAAAATGTCTCTTGAGAGATCAAATTTCATTCAGCTAAATTCTGCCTTTTACATAGCTTGGATGGGGCTTTTTATAGCCATTACATGAGTGAAACCCCCAATCCTTCACTTTCCAAAATAAAACCCATAAGTAGTAATGACCACAATTGGTCTACTTAATAACTTCCCAGAATTGAACTCTAAAGTTGAAACCATAATTTGGAAGACCAAAAACTCAAAAATTACAAGCAAAATTTGATGACTTAGAAACAACAAATGAATCTTTAAAATGTTGGCACAACGTCAATCTTGCAAACATTGACCTTCACAACATCGTCCTCTCTTGGATTATTTTGCAGCATCTAAAATAAAGGTTGAACTGAGCCTATCCAATTTTGTACGTGAATAAGGAATGCTTGTTGAAGCTTCTTAGCCCTGGCTCGTGTAATAGGTCCAGTGGAGACGTGCGGAACACCATTATTCTTATCATCTTCCCCCTCTTCAACAGGATTCGTCCTCGAATCAGATAAGTGATCACCTACATCAAAAGGACTCAAATCAGCAACATTGAAAGTAGAACTTATTGAAAAGTCACCTGGAAGATCAATCTTGTATGCATTATTGTTAACTCTTTCAAGAACTTGATAAGGACCAGCCCCTCATGGATGTAACTTTGTCTTCCGTTTCGAGGGAAAGCGCTTCGTGCGAAAATGTATCCAAACCCAATCACCCGGTTGAAAAATCAGTTCTTTCTGTTCTTTGTTAATACGTGAAGCAACTTTCCAATTCTATTTTTCAATCCTCTCCTTGACCTCTTTGTGTAAGGTTTTGATAAAATCGGCCTTACTTGTGGCTGCATCACTCACAAATGCATTAGATGGAATAGGAAGCAAATCAAGGGGTGTAAGTGGATTGAATCCATAAATAACCTTAAAAGGAGAACAATGTGTGGTACTATGAATTACCCTGTTATATGCAAACTCTACAAATGGCAAACTTTCTTCCCAAGAGTTAATATTCTTAGAAATAATAGTCCTAAGTAATGCTTCCAATATTCTATTAACCACCTTGGTTTGCCCATCAGTTTGAGGATGACATGTAGTTGAGAACAACAATTTAGTACCCAACTTACCCCACAACACCTTCCAAAAGTGGCTTAAAAATTTAACATCCCTATCACTAACAATAGTTCTAGGAATGCCATGCAACCTTACCACCTCCCTAAAGAATAAGTCAGCCACATGTTTTGCATCATTTGTCTTGTTACATGCTATGAAGTGAGCCATTTTACTAAATCTATCCACCACAACAAAAATACTATCTCTACCCTTTTTAGTTCGAGGCAAACCAAGAACGAAATCCATTGATATATTAGTCCAAGGTTCATTAGTTACATTCAAGGGAGTATACAAACCATTTGGTTGTGATCTAGACTTAGCCGATTTACATTTAAAACATTGGCTACAACTCTTATGCACATCATGTTTCATCTTAGGCCAAAAGAAGTGTTCATGCAACATATCATAAGTTTTATGAATCCCAAAATGTCCCATCAATCCACCCTCATGGGCTTCTTTCACAAGCAAATCTCTTATAGAACATTTAGGAACACAAAGCTTACTTTTTTTAAACAAAAAGTAATGAAACACATAATAATCATCCACAGCTTTCCCACCAAGACAAGATGCATAAATTGTTCCAAAGTCATGGTTATCTCTATATAACTCCTTAATATGCTCAAATCCAAGAATTTTTGCACTAAGAGAAGTAAAGAGATTGTACCTTCTTGATAATGCATCAGCAACCACATTGTCCTTACCTTGCTTATATTTGATAACATAGGGGAATGTTTCAATAAACTCTACCCACTTTGCATGCCTACGATTTAGCTTGCTTTGACCTTTAAGATGCTTCAAGCTTTCATGATCGGTGTGGATCACAAACTCTCTCGGCCACAGGTAGTGTTGCCATACCTGCAACGTACGAACTAAAGCAAACAATTCTTTATCATAGGTAGAATAGTTCAACGAAGCCCCATTTAGTTTTTCACTAAAATACATTAACGGTTTTCCATCTTGCATCAAAACAGCACGTATGCCCAAACCACTTGCATCACACTCGATTTCAAAAGTTTTATCAAAGTTAGGCAAGACAAGTAATGGTGCATTGGTTAATTTTCCCTTAAGTTCATTGAAAGCTCTCTCTTGCATTTCCCTCATTCAAAAACAACATTCTTTTTCACTAAGTCATTTAATGGTGCAACTATTGTACTAAACTCCTTTATAAACCTTCTATAGAAGCTAGCTAGACCATGAAAACTCCGAACCTCACTGACATTTTTTGGTGTTGGCCAATCCCTAATTGCCTTAACTTTCTCTTCATCGACTTCAACTCCATTTTTACCAACTATGAAGCCAAGAAAGTTAACCTTTTCCATGAAAAAGCTACACTTATTAAAATTAGCATAAAGCCTCTCTTTTCTAAGTGTAATCAAAACGAATCTAACATGCTCTACATGCTCAAGCAAATTCTTTGAATAAATCAAAACATCATCAAAATACACAACAACATACTTCCCCAAGTATTCTCTCAAAACATGATTCATCAAGAGCATAAATGTACTAGGAGCATTAGTTAACCCAAAAGGCATAACAAGCCATTCGTACAATCCAAATTTAGTTTTGAAAGCTGTTTTCCATTCATCTCCTACATGCATCCTAATTTGATGATATCCAGATTTCAAATCAATCTTTGTAAATAGACAAGAACCATGCAATTCATCAAGCATATCATCTAGCCTAGGAATAGGATGATGATACTTTATAGTGATTTCATTGATGGCTCTGCAGTCCACACACATGCGCCAAGTTCCATCCTTCTTTGGCACCAATATGACCGGTACAGAACATGGACTCAAACTTTCGCGAACATAGCCTTTCTCCATGAGCTCCTCCACTTGTCTTTGAATTTCCTTTGTCTCAATTGGATTTGCTCTATAAGCTGGCCTATTTGGAATGGTAGCCCCCAGTATGAAGTCTATTTGATGTTCAATACCTCTAATTGGAGGTAACCCTTTAGGTATATCTTCTTGGAACACGTCCTCAAAATTCCTGCAAAAGAGGTTGAAACAAACTCGGCAAAGGCAAAAGGTTATCGTTAGAAGCCAAATACCCTTCTTTGTACATAAGTACAAATATGGGCTTTTGGGAAAACATTGCTCTTCTCACCTCTCCCACTCTAGCCAAACAACTGACTTTCTTTTCTTTTATATCAATTTCATCTCTTTTTTCACTCTTTTCTCCATTTTTTCTTTCTCTCTCATTTTCCTCTATTTTTTCACCCATTTCATTCTTTTCTTTCAAATCTTTTTCTTCAAACTCTTTTCTTTTCTTCTCCAACTTTAATTGATCAGCAAATACATCCTCCAAACGCAAAGGTACAAGAGTTGTTTTTTTACCATCTTTTGTAAAAGAGTACCTATTCAAATAACCATCATAGATGACCTTCCTATCAAATTGCCAAGGTCGGCCAAGCAAGATGTCACCGACATGCATAGGTAATACATCACATAAAATCTCATTTTTATACTTTCCTAAGGTAAAAGAAATTAAAGCTTGAGAAACAACCTTCATTGTTCCACTGTCGTTGAGCCACTGAAGCTTGTAAGGTTTAGGATGGTGTTGAGTTGGAATTTGCAGCCTTTTGATCAAAAATGTACTTACTACATTGGTGCAACTTCCACTGTCAATAACAAGACTACAAGGAGTCCCATTAACTAAACACCGTGTGTGGAATCGGTTGTCTCTTTGGTCATTAACATCATCCCCCTTAACTTGAGTGTTAAGAAGTCTCCTTGTAACAAGTGCCAAATGACTCCCATCTTCCAATTCCTCCTCATCCTCCTGGAGCTTTTCTTCAATTAGCTCATCTTGGTCACTTTCCTCACCATCCGTAACAACTTCTTCATTCTTAATGATCATGACTCTCTTGTTTGGACAATCACGGCTAATATGACCAATCCCTTGACATTTCCAACATTTGATGTCCCTGTTTCTCTTTCGAACCTCTTTAGATCCCTCCACTTTTTCCTTGCCCTTGGAGCTCTCAGGCTTGTCCTTTTTATCAAGCTCATACTTTCCTCTAGGTTTGAAATCTGCATTCTTTTTCCAAGTATTAGTAGAAAAAGAAGTTGACTTAGAAGAAGTATACCTCTTGGAGTTCTCCTTCTCCCATGCTAATTGGCCTTCAATTTTGACAGCAAGGTGTAACAACTCTTTCATATGAAAATAAGTTTGTCTATCCATTTGATGAGCCAACGGTCGATTCAACCCGCCAAGGAACCTAGCCATTGTATCCTCCGCATCTTCATCAATTCCAGCTCTATTCATAAGGGCCTCCATTTCTTTGTAATAGTCTTCCACACTTTTCGATCCTTGTTGCAACGCATAGAGCTTTTGCTTGAGTTCTCGAGAATAATGCTTAGGAATGTACCTCTTCCTCATTAAGGCCTTTACTTCCTTCCAAGTTTCAATTGGTTCTTCATAGTTTCTCCTCCATTCTGATTTCAAAGATGTTCACCAAATATTGGCATAATCACAAAATTCAGCCACTGCAAGTTTCAACTTTCTTTCCTCACTAAAATTGTTGCAATCAAATACATGCTCGATTTTGCTTTCATATTGCAAATACTCTTCCGGATCTGATCTTCCATGAAAGGATGGAATTTTAAGCTTCACTCCCCTGGCCCCTCTCTATTCCCTTTCATATTGCTACTCCCTATCAACTTCTAGTGGTAACATTTCTCTTCCCACTCTTCTTCCCCTTCCTCTGCCCCGACCTGCACCTCTTCCTCCCCTTGGATTGTGCCCGGCTAAAAGGGTTACATTGTCATCTTCTTCTTCATTTTCAATTCCTTCATTAACTTCCCTTCCTTGAGGATTTCCTAAAGCTACTTCAATTCGCTCCATCCGTTCTGCCAAGGTACTAATTACTTGGTTTAAACGAGTAATGGCCCCGGTTTGTGCTTCTCTCCACCTAGCTTCACTAATATCCGCTCCATTTCCCCCATCTGGATTCATGACGTTACAAACAGTAGTTAAATATGTTTAGGACCTCACACACTCAACTCACTGATTTTCACTCGGAACACTCGTGTCTATCACACACAAAGGTAGGCTATTTGGGAAAGTGACTAAATGTTGACATTGGGTAGGCTAACTTGTGGTCCAAGCAATTCTTGTAATAGTGAACATTACAAAACAGCCAAGACAAGATAATTATGAAATCTCATCTAGAACAAAGAAAACAACGATAGGATGCCTTCTACGAAATTCAGAGATATGTGCCACACAAATAAAGAGACAGCCCTAAATATGATGGAATTAGACTTTATGAAGCAAAGAGAATAAATTTGAATGACAAATTCCTTCAATTCTGAAAAGAATAAAGTATAGAAGCAAACCAGGATTTTTCCATTAAAATTGCAAACAGAGACGGAATTCCAAAAACGAATATATTACTTTATGATTTTGACTAAATGGTCTTCTTAACTTTGAAAGGTAACATTCAGATCTAACGTTTCACTTCAGAAGAAACAATTAAATTCGAACGTTATCAAGGACTTTCAATAGGCATTACAATGATTAAATGCTGTAGTTACGAATTTGGACAGTCATAATAAGATTTGATTATAACTATCAATGAACAACAAAGTTTCATGCAATTTGAAACGGATTAAAGAGAAATATGAATCAACAACTCAAGAACACTACTTGAACAACTTCTGGATTTTTTTTTTCAAGAAATCAACACTGAACAATTGAAATGAAAGATAGAATCAATTCTAGAGTAGGCAACAAAGATGCAACCTATGCTCTGATACCAAATGATAAGGCAATTCTAATTCTCAGCCCAATGATCCAAGCTTTTGTTGAGCAAGAACCCTTGGATCAAAGAAATTAACACCTCCTTAAACAAGTTAGAATCAACCAAGAGAAAGGCTAGAAATTGATTACCTCTATGATCAAATATCTAGAAGCAAGAATGGAGATCTTGTTATAGAATGAGTCATTCCACAATCAAACTTGATCAAGGCTGGATTGAATGGCTTAAAATGCAATCTATCACAAGAATTGCAAGAAACCTTAGAAATGGTAATGGGATTTCTAAAGAAAATGTCTCTTGAGAGATCAAATTTCATTCAGCTAAAATCTGCCTTTTACATAGCTTGGATGTGGCTTTTTATAGCCATTATATGAGTGAAACCCCCAACCCTTCACTTTCCAAAATAAAACCCATAAGTAGTAATGACCACAATTGGTCTACTTAATAACTTCCCAGAATTGAACTCTAAAGTTGAAACCATAATTTGGAAGACCAAAAACTCAAAAATTACAAGCAAAATTTGATGACTTAGAAACAACAAATGAATCTTTAAAATGTTGGCACAACGTCAATCTTGCAAACATTGACCTTCACAAAATCGTCCTCTCTTGGATTATTTTGCAGCATATGAAATAAAGGTTGAACTGAGCCTATCCAATTTTGTACGTGAATAAGGAATGCTTGTTGAAGCTTCTTAGCCTTGGCTCGTGTAATAGGTCCAGTGGAGACGTGCGGAACACCATGATTCTTATCACAAGGCCAAGGTTGCACAGAAAGGAAAGTGTTTCCACTGCAACATGGACGGGCATTGGAAGGGCAACTGTTCGAAATACCTGGCTGAAAAAAAAGAAAGCCAACGAAGGTAAATATGATTATGCTTTGGAAACATGTTTAGTGGAGAACGATGACTCCGCCTGGATATTGGATTCAGGAGCCACTAATTACGTTTGTTGTTCGTTTCAGGGAATTAATTCCTAG

mRNA sequence

ATGTCTACTTCTATTATTGCACTCCTAGCCGTGGAAAAACTTAACGACAATAATTACAAACAATGGAAATCGAATCTAAACACTATACTCGTGATAGATGATCTTAGGTTCGTCTTGCAAGAGGATTGTCCTCAAGCTCCTGCGCCTAACGCCACTGTGGCGGTGCGCAACATCTATGACATATGGATCAAGGCCAATTACAAGGCTAAGGTCTACATCTTGGCGAGCATATCTGATGTGCTTGCTAAGAAGCACGAGGACACAGTCACCGCTAAGGAAATCATGGACTCGCTGCAGAGTATGTTTAGACAACCGTTTTCACAGGCTCGACATGATGCCCTTAAGTTCATTTACAACTCCCACATGAAGGAGGGCTCATCAGTGCGAGAACACGTTCTCAACCTGATGGTCCACTTCAACGTGGCGGAGTCGAACATGACTGTTATAGACGAGCAGACTCAGGGACTGGAAGGGGACGCAAACGTTACCACCTCGAAAAAGTTCCACCGAGGTTCGACCTCTAGAGCCAAGTCTGTGGCATCTTCTTCTGGAAGTAAGTCCAGTGGAGACGTGCGGAACACCATGATTCTTATCACAAGGCCAAGGTTGCACAGAAAGGAAAGTGTTTCCACTGCAACATGGACGGGCATTGGAAGGGCAACTGTTCGAAATACCTGGCTGAAAAAAAAGAAAGCCAACGAAGGTAAATATGATTATGCTTTGGAAACATGTTTAGTGGAGAACGATGACTCCGCCTGGATATTGGATTCAGGAGCCACTAATTACGTTTGTTGTTCGTTTCAGGGAATTAATTCCTAG

Coding sequence (CDS)

ATGTCTACTTCTATTATTGCACTCCTAGCCGTGGAAAAACTTAACGACAATAATTACAAACAATGGAAATCGAATCTAAACACTATACTCGTGATAGATGATCTTAGGTTCGTCTTGCAAGAGGATTGTCCTCAAGCTCCTGCGCCTAACGCCACTGTGGCGGTGCGCAACATCTATGACATATGGATCAAGGCCAATTACAAGGCTAAGGTCTACATCTTGGCGAGCATATCTGATGTGCTTGCTAAGAAGCACGAGGACACAGTCACCGCTAAGGAAATCATGGACTCGCTGCAGAGTATGTTTAGACAACCGTTTTCACAGGCTCGACATGATGCCCTTAAGTTCATTTACAACTCCCACATGAAGGAGGGCTCATCAGTGCGAGAACACGTTCTCAACCTGATGGTCCACTTCAACGTGGCGGAGTCGAACATGACTGTTATAGACGAGCAGACTCAGGGACTGGAAGGGGACGCAAACGTTACCACCTCGAAAAAGTTCCACCGAGGTTCGACCTCTAGAGCCAAGTCTGTGGCATCTTCTTCTGGAAGTAAGTCCAGTGGAGACGTGCGGAACACCATGATTCTTATCACAAGGCCAAGGTTGCACAGAAAGGAAAGTGTTTCCACTGCAACATGGACGGGCATTGGAAGGGCAACTGTTCGAAATACCTGGCTGAAAAAAAAGAAAGCCAACGAAGGTAAATATGATTATGCTTTGGAAACATGTTTAGTGGAGAACGATGACTCCGCCTGGATATTGGATTCAGGAGCCACTAATTACGTTTGTTGTTCGTTTCAGGGAATTAATTCCTAG

Protein sequence

MSTSIIALLAVEKLNDNNYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNIYDIWIKANYKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFRQPFSQARHDALKFIYNSHMKEGSSVREHVLNLMVHFNVAESNMTVIDEQTQGLEGDANVTTSKKFHRGSTSRAKSVASSSGSKSSGDVRNTMILITRPRLHRKESVSTATWTGIGRATVRNTWLKKKKANEGKYDYALETCLVENDDSAWILDSGATNYVCCSFQGINS

Homology

[Close]

BLAST of Moc06g13500 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 274.6 bits (701), Expect = 9.0e-70
Identity = 161/327 (49.24%), Postives = 199/327 (60.86%), Query Frame = 0


Query: 1   MSTSIIALLAVEKLNDNNYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNIYD 60
           M+++ + +LA +KLN NNY  WK+ +NT+L+IDDLRFVL E+CPQ PA NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  IWIKANYKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFRQPFSQARHDALKFIYNS 120
            W KAN KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MF Q   Q +HDALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 HMKEGSSVREHVLNLMVHFNVAESNMTVIDEQTQ-------------------------- 180
            M EG+SVREHVLN+MVHFNVAE N  VIDE +Q                          
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 -------------------GLEGDANVTTS-KKFHRGSTSRAKSVASSSGSK-------S 240
                              G +G+ANV TS +KFHRGSTS  KS+ SSSG+K        
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 241 SGDVRNTMILITRPRLHRKESVS-TATWTGIGRATVRNTWLKKKKANEGKYD-YALETCL 273
            G+  N     T  +    + +       G  +        +KKKA +GKYD   LETCL
Sbjct: 241 QGNKANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300

[Close]

BLAST of Moc06g13500 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 274.6 bits (701), Expect = 9.0e-70
Identity = 161/327 (49.24%), Postives = 199/327 (60.86%), Query Frame = 0


Query: 1   MSTSIIALLAVEKLNDNNYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNIYD 60
           M+++ + +LA +KLN NNY  WK+ +NT+L+IDDLRFVL E+CPQ PA NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  IWIKANYKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFRQPFSQARHDALKFIYNS 120
            W KAN KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MF Q   Q +HDALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 HMKEGSSVREHVLNLMVHFNVAESNMTVIDEQTQ-------------------------- 180
            M EG+SVREHVLN+MVHFNVAE N  VIDE +Q                          
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 -------------------GLEGDANVTTS-KKFHRGSTSRAKSVASSSGSK-------S 240
                              G +G+ANV TS +KFHRGSTS  KS+ SSSG+K        
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 241 SGDVRNTMILITRPRLHRKESVS-TATWTGIGRATVRNTWLKKKKANEGKYD-YALETCL 273
            G+  N     T  +    + +       G  +        +KKKA +GKYD   LETCL
Sbjct: 241 QGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300

[Close]

BLAST of Moc06g13500 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 274.6 bits (701), Expect = 9.0e-70
Identity = 161/327 (49.24%), Postives = 199/327 (60.86%), Query Frame = 0


Query: 1   MSTSIIALLAVEKLNDNNYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNIYD 60
           M+++ + +LA +KLN NNY  WK+ +NT+L+IDDLRFVL E+CPQ PA NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  IWIKANYKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFRQPFSQARHDALKFIYNS 120
            W KAN KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MF Q   Q +HDALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 HMKEGSSVREHVLNLMVHFNVAESNMTVIDEQTQ-------------------------- 180
            M EG+SVREHVLN+MVHFNVAE N  VIDE +Q                          
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 -------------------GLEGDANVTTS-KKFHRGSTSRAKSVASSSGSK-------S 240
                              G +G+ANV TS +KFHRGSTS  KS+ SSSG+K        
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 241 SGDVRNTMILITRPRLHRKESVS-TATWTGIGRATVRNTWLKKKKANEGKYD-YALETCL 273
            G+  N     T  +    + +       G  +        +KKKA +GKYD   LETCL
Sbjct: 241 QGNKANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300

[Close]

BLAST of Moc06g13500 vs. NCBI nr
Match: KAA0035879.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051221.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051893.1 gag/pol protein [Cucumis melo var. makuwa] >TYK00551.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 274.6 bits (701), Expect = 9.0e-70
Identity = 161/327 (49.24%), Postives = 199/327 (60.86%), Query Frame = 0


Query: 1   MSTSIIALLAVEKLNDNNYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNIYD 60
           M+++ + +LA +KLN NNY  WK+ +NT+L+IDDLRFVL E+CPQ PA NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  IWIKANYKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFRQPFSQARHDALKFIYNS 120
            W KAN KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MF Q   Q +HDALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 HMKEGSSVREHVLNLMVHFNVAESNMTVIDEQTQ-------------------------- 180
            M EG+SVREHVLN+MVHFNVAE N  VIDE +Q                          
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 -------------------GLEGDANVTTS-KKFHRGSTSRAKSVASSSGSK-------S 240
                              G +G+ANV TS +KFHRGSTS  KS+ SSSG+K        
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 241 SGDVRNTMILITRPRLHRKESVS-TATWTGIGRATVRNTWLKKKKANEGKYD-YALETCL 273
            G+  N     T  +    + +       G  +        +KKKA +GKYD   LETCL
Sbjct: 241 QGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300

[Close]

BLAST of Moc06g13500 vs. NCBI nr
Match: KAA0047792.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 274.6 bits (701), Expect = 9.0e-70
Identity = 161/327 (49.24%), Postives = 199/327 (60.86%), Query Frame = 0


Query: 1   MSTSIIALLAVEKLNDNNYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNIYD 60
           M+++ + +LA +KLN NNY  WK+ +NT+L+IDDLRFVL E+CPQ PA NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  IWIKANYKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFRQPFSQARHDALKFIYNS 120
            W KAN KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MF Q   Q +HDALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 HMKEGSSVREHVLNLMVHFNVAESNMTVIDEQTQ-------------------------- 180
            M EG+SVREHVLN+MVHFNVAE N  VIDE +Q                          
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 -------------------GLEGDANVTTS-KKFHRGSTSRAKSVASSSGSK-------S 240
                              G +G+ANV TS +KFHRGSTS  KS+ SSSG+K        
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 241 SGDVRNTMILITRPRLHRKESVS-TATWTGIGRATVRNTWLKKKKANEGKYD-YALETCL 273
            G+  N     T  +    + +       G  +        +KKKA +GKYD   LETCL
Sbjct: 241 QGNKANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300

[Close]

BLAST of Moc06g13500 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 4.3e-70
Identity = 161/327 (49.24%), Postives = 199/327 (60.86%), Query Frame = 0


Query: 1   MSTSIIALLAVEKLNDNNYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNIYD 60
           M+++ + +LA +KLN NNY  WK+ +NT+L+IDDLRFVL E+CPQ PA NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  IWIKANYKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFRQPFSQARHDALKFIYNS 120
            W KAN KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MF Q   Q +HDALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 HMKEGSSVREHVLNLMVHFNVAESNMTVIDEQTQ-------------------------- 180
            M EG+SVREHVLN+MVHFNVAE N  VIDE +Q                          
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 -------------------GLEGDANVTTS-KKFHRGSTSRAKSVASSSGSK-------S 240
                              G +G+ANV TS +KFHRGSTS  KS+ SSSG+K        
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 241 SGDVRNTMILITRPRLHRKESVS-TATWTGIGRATVRNTWLKKKKANEGKYD-YALETCL 273
            G+  N     T  +    + +       G  +        +KKKA +GKYD   LETCL
Sbjct: 241 QGNKANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300

[Close]

BLAST of Moc06g13500 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 4.3e-70
Identity = 161/327 (49.24%), Postives = 199/327 (60.86%), Query Frame = 0


Query: 1   MSTSIIALLAVEKLNDNNYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNIYD 60
           M+++ + +LA +KLN NNY  WK+ +NT+L+IDDLRFVL E+CPQ PA NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  IWIKANYKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFRQPFSQARHDALKFIYNS 120
            W KAN KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MF Q   Q +HDALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 HMKEGSSVREHVLNLMVHFNVAESNMTVIDEQTQ-------------------------- 180
            M EG+SVREHVLN+MVHFNVAE N  VIDE +Q                          
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 -------------------GLEGDANVTTS-KKFHRGSTSRAKSVASSSGSK-------S 240
                              G +G+ANV TS +KFHRGSTS  KS+ SSSG+K        
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 241 SGDVRNTMILITRPRLHRKESVS-TATWTGIGRATVRNTWLKKKKANEGKYD-YALETCL 273
            G+  N     T  +    + +       G  +        +KKKA +GKYD   LETCL
Sbjct: 241 QGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300

[Close]

BLAST of Moc06g13500 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 4.3e-70
Identity = 161/327 (49.24%), Postives = 199/327 (60.86%), Query Frame = 0


Query: 1   MSTSIIALLAVEKLNDNNYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNIYD 60
           M+++ + +LA +KLN NNY  WK+ +NT+L+IDDLRFVL E+CPQ PA NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  IWIKANYKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFRQPFSQARHDALKFIYNS 120
            W KAN KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MF Q   Q +HDALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 HMKEGSSVREHVLNLMVHFNVAESNMTVIDEQTQ-------------------------- 180
            M EG+SVREHVLN+MVHFNVAE N  VIDE +Q                          
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 -------------------GLEGDANVTTS-KKFHRGSTSRAKSVASSSGSK-------S 240
                              G +G+ANV TS +KFHRGSTS  KS+ SSSG+K        
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 241 SGDVRNTMILITRPRLHRKESVS-TATWTGIGRATVRNTWLKKKKANEGKYD-YALETCL 273
            G+  N     T  +    + +       G  +        +KKKA +GKYD   LETCL
Sbjct: 241 QGNKANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300

[Close]

BLAST of Moc06g13500 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 4.3e-70
Identity = 161/327 (49.24%), Postives = 199/327 (60.86%), Query Frame = 0


Query: 1   MSTSIIALLAVEKLNDNNYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNIYD 60
           M+++ + +LA +KLN NNY  WK+ +NT+L+IDDLRFVL E+CPQ PA NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  IWIKANYKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFRQPFSQARHDALKFIYNS 120
            W KAN KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MF Q   Q +HDALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 HMKEGSSVREHVLNLMVHFNVAESNMTVIDEQTQ-------------------------- 180
            M EG+SVREHVLN+MVHFNVAE N  VIDE +Q                          
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 -------------------GLEGDANVTTS-KKFHRGSTSRAKSVASSSGSK-------S 240
                              G +G+ANV TS +KFHRGSTS  KS+ SSSG+K        
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 241 SGDVRNTMILITRPRLHRKESVS-TATWTGIGRATVRNTWLKKKKANEGKYD-YALETCL 273
            G+  N     T  +    + +       G  +        +KKKA +GKYD   LETCL
Sbjct: 241 QGNKANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300

[Close]

BLAST of Moc06g13500 vs. ExPASy TrEMBL
Match: A0A5D3CSZ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00320 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 4.3e-70
Identity = 161/327 (49.24%), Postives = 199/327 (60.86%), Query Frame = 0


Query: 1   MSTSIIALLAVEKLNDNNYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNIYD 60
           M+++ + +LA +KLN NNY  WK+ +NT+L+IDDLRFVL E+CPQ PA NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  IWIKANYKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFRQPFSQARHDALKFIYNS 120
            W KAN KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MF Q   Q +HDALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 HMKEGSSVREHVLNLMVHFNVAESNMTVIDEQTQ-------------------------- 180
            M EG+SVREHVLN+MVHFNVAE N  VIDE +Q                          
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 -------------------GLEGDANVTTS-KKFHRGSTSRAKSVASSSGSK-------S 240
                              G +G+ANV TS +KFHRGSTS  KS+ SSSG+K        
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 241 SGDVRNTMILITRPRLHRKESVS-TATWTGIGRATVRNTWLKKKKANEGKYD-YALETCL 273
            G+  N     T  +    + +       G  +        +KKKA +GKYD   LETCL
Sbjct: 241 QGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300

The following BLAST results are available for this feature:

BLAST of Moc06g13500 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044955.1	9.0e-70	49.24	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	9.0e-70	49.24	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	9.0e-70	49.24	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035879.1	9.0e-70	49.24	gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumi...	[more]
KAA0047792.1	9.0e-70	49.24	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Moc06g13500 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g13500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	4.3e-70	49.24	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	4.3e-70	49.24	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7TU93	4.3e-70	49.24	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]
A0A5A7TWB9	4.3e-70	49.24	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]
A0A5D3CSZ6	4.3e-70	49.24	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G0032...	[more]

BLAST of Moc06g13500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 62..140 e-value: 3.0E-7 score: 30.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..191
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 18..154
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 18..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g13500.1	Moc06g13500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0005488	binding