Moc06g12460 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g12460
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Reverse transcriptase domain-containing protein
Location	chr6: 9571244 .. 9575655 (-)
RNA-Seq Expression	Moc06g12460
Synteny	Moc06g12460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGTGCTCCTTCAAAGGCGAAAAATCAGGATCCTTCATTAATATTAATGGCGTTTCCTAATGGTCAGAACATGGCCAAGGCAATTGTGGAAAATCAGGGGACTCATATTCAAGATGGACATGATTCTGATCGAATGGACATTGAATTTTAACTATTAAATCAAAAGAACGTTTGATTTTCAAGGGATCCAACGAGCCTATAAAATCGACAATAAATGGGGAATCACATCCCATTGTTAGTGGGTCGAAAGATCATATTGGGCCAACTGATGGTAATAGGCCGAAACAAGGTTGGAAAAGGAAGGAAAGGGGAATCCAGATTAAGGAGATGGACTTGAATTTATCCAACCCGCTAATAGGGAAAAGGAAATTAGAAGGTACAGAGGAAGATTTGTCTATTGGTCCAGAAAAAAAAAAAACTGAAACAGACTACAAATGCATGTTCTTAAACTCAAGCTTGGGTTTCAAAATTGCTTTCCAGTGGACTGCAAGGGAGAAGTGGTGGTCTAGCGTTGTTGTGGCAAGATAATGTGAAGTTTAATCTTCTCTCTTCCTCTAAAAATCACATTGATGGGTGGGTTGAATGGGAAGGAAGTCAGTGGAGGATGACGGGGTTTTAAGGGTGGACTTGAGGCCTATCAATGAAACTATGTTGGTACTGATCCCAAAGAATAAATCCCCTTTGAGAGTGTCTGACTTTCGACCTATTGTTGCTTTCCCACAACCGACGTGAATGCAAGTGCAAGTGTACACTATATTCTTGTCGATTGTAGTATAAACAAGGTCGAAATCCACAGGAATTAAGGATGTTACTTTAAGCATGCACTTAAGAATACCAAAAAATGCAAATAAAAGATAAATAGTGTTTATAGAATTATAACTAAGTATTTTCTAAGAGAGAAATATTGTGATAACAGATGCTGGGGCAAAGAAATGCTGTAGCAAAATGAATAGAACGGGGAAACAGTTAATGAGATGGAAACGGGAGAGATCGTGACATGCTTTCACTTGCTCACAGAAGACGCTCTAGCATAAAATCGCTACTGATGCTCAAACCAACGTGGTTCCCTTCCGAGACACCCAAATATGAATATCTACAACTTCCGTTGATAAATACCCAAGCATAAAGAATAGTTTATAAGCATGGTTAGGCGGACCTTATCCTTAAGAAAAAACAAATTTACTAGAAAAAAGTAACTAACCACAAAGAGAGCCAAACACGCTACCTATATACCCTTTCGAGTCATAAAAAAGCAAACAAACTGATAAATGTGGCCAGCATAGATCAGTAAGATGAAAATATTATATCAACTCTATTTAACAGCAGCAGAAACAGCTAGAAAGCCTCTGTTCACAAGCTACATCAAAGGATCCCAAAAATGGGGTTTAGTTCATGGGGAATGAAGAAAATACAATGGGTAGAGAGAGAAACAACCCATTTTGTGGAAAAGCTTTGAAAAATCCTCTGAAACCTCCTGAGAAACCAACAATTCTAGCCTCCTCCCGTCGGCTTTTTCTCGAAATGGGGGCAGCTTTCCTCGTCTTCAGCACATTTTGGGACTATTTTCCTCTCTTGGGATCTTTTCCCCCTTGGGGATTGATAATGAGACAACCTCATCTTGTTGCTTTTATAGCTCTCCCGAAAATTAGGGCGAAACTCAGTAAAACGCGCGTTGTACGGACAAAAGTAAAAATCCCGCGTTTTACTGCTGCCCAGGAATTTCTGCAGCAAGTGATGCTCCAACATTGACATGCTCTGGCACAACAACGCTCCGACATTTCTCCTCTAATCCTGGCATTCTCCTCAGTAAGTTTTCCAAATTCTGCACAATTAAACCAAAAAAAATAGGGGAAATAAGCAGGAACTTGCGTAAATTCAACAACATCAGGATTTAGAACATGGTAATCATCTTTTTCACTCAATTCCTCACTTAAGCATGCAATTTAGACACAAATGCCCTCACGTTAAAGCACAAATTAACCCAAATTATTAATAAAATAACTCTCTTTTGGAGAGTTATCACCTGTCTCCCTTTGCAATGTTTGTTATAAAATCATATCAAAAGTGATGGTTAACGGATTGAATAGGTATCTTGATCTTGTTATATCTCATAGTCAAGAGTGCTTTTATCTCAAAAAGGCACATCATTGATAATGCAATTATGGGTTTTGAATGTATTCACTCTCTTCGGAATAGAAAAACGGGTAATTTAGCATGGTCAACTTTGAAATTGGATATAAGTAAGGCTTATGACCGTGTCGAGTGGGCTTTCTTAGAAGAGTGATGTTAAGAATGGGCTTTGCTAAAGGCTGGGTTGATTTAATCATGAGATGTGTCCGATCTGTTTCTTTCTCCTTCAAATTAAACGGGGAGAGAAGGGGTCATATTATTCCTCAAATAGGGTTGTGGCAAGGTGATCCGCTCTCTCCTTACTTGTTTCTTTTTTGTTCAGAGGGGTTATCAGCACTTCTCCAACATCAAGCTAATGAGAGAAAGGTCTCGAGCTTGAAATTATCTAGACATAGCCCTCCTATTACTCACTTATTTTTTGGTCTTTTGTTCTTCAAAGCAAAGAGTTGTGAAGCTAGAGCTATCAAGGAGTGCCTCAAGCTCTATGAACGTGCTTCTTGTCAGATGATAAATCATGACAAATCAAGGCTAGCTTGCAGCCCAAATGCTGGTGCTTCTTTGAAAGAAAGGATGAAGGGAATCCTCTCAGTTTCTTTGGTAGATTGCCATCATCAATATCTTGGCCTTCCTTCCTTCATGCCGAGGAATAGAGTATCCAATTTTGATTATATCAAAGAAAGTGTGAGGAAGCAGCTTCAGGGTTGGAAAGGGAAGCTTTTTTCTAACGGTGGTAAAGAGGTTCTTATTAAAGCTGTAGTGGTTCAAGCTATTCCTTGTGATTCTATGTCCTGCTCTAGGTTGCTTAAGAAGCTTCTCCATGAGTTAAATCAGCTTGCTATTCGATTTTGGTGGGGAGAAGGGAGGAGTTGAGGAAAATTCACTGGATAGGGTGGAAGACTCTTTGTAAGCCAAAATGCTATGGAGGCTTGGGGTTTCATGACTTGGAGCTCTTTAATAAAGCTATGCTAGCTAAGCAAGGGTGGAGGATCATAAACAATCCTTCTTCCTTGTTGGCTCATGTGCTAAAAGGGAGGTATTTTAAAAATTGTGATTTTATGTCAGCGAAGATCGGTTGGAAGCCATCCTACATTTGGAGAAGCCTTCTTTGGGGGCGGGAGATTTTGGAAGATGGCACTCGGTGGAGGATTAATAATGGGGAGAAGGTTCAAATTTATGGAGATAATTGGGTTCCTAATAAACCTACTCTAAAGATCCTTTCGGATCACAAACTCCTCGTGACCACAACGGTTAGTTTTTTTTATTAGTGATATAGGACAGTGGAAAGCTGACTTAGTACATTCCCTGTTTGCAGTTGATGAGGCCCGATGTATCCTTTCCTTGCCTCTCCTTTCGGGAAGGGAAGGGGATAGGCTCATTTGACATTTTGAGAATTTAGGCGTTTATACGGTGAAAAGCGGGTATCGAGTGGCACAAATGAAGAGTCTTGATTGTTGCGCATCATCTTCTTCAGTGTGGGAAGAAGGGCGAGAATAGTTTCCATCTATTCCTAGACTGTAAATTTTCGAGGAGTATATGGAATTCAGCTAAGTTTGTGGGTCTCTAGGTTCCCTCTCATCACCGTAATTTGTGTTTAACACTTCAAGAGTAGAAAGATAATTTAAGGTGGCCTGATTTTGAAGAAGTGATCGTTTATCTGTGGGCTATATGGGACAAGCGGAATGCTAAAGCTTTGAATAAGGGTGGTGATGGGTTTAGCACAGTGTAGGTGAATTCATATATCTCAGTCTATAGAGAAGCAAATATCAGTATCGACATTTCAAGACACATTGCTTCAGAGCCCTAACCATGTGGTTTGGAAATCGCCTATATCAGGAGTCTACAAAATAAATACGGATGCATCTTTTAATCCACTTGATTTAAATGCAGGGCTAAGGATTATTATCAGAGATTCGAAAGGGCAAGTTCTGGCTGCTGAAACTAAATACCTGGATCATGCATTCTCGGTGGATGTTGTCGAAGCCTTAGCAGCGGAGGAGGGTCTGAAGCTAGCACTAGATATTGGAATTTCGCCACTTCAAGTCGAAATGAATTCTTTGCGAATTTTCAATCTATTTCTGCACAATAAAGGTGATTTATCAGAGGTTCGGTTGATTGTTCAAAAGACTAAGAAATGTATAGTAAATCGGCTCCATGCAGCTTACAATTTACAATTTTACAAAACGAGAAGGAAATGGGGATACCCATTTTTTGGCGAGACGGGCGTTGCAGGGATGGAAGAAGGTCATTTTGGGGTTGTCTCCCGGAGAGAGATTGTAA

mRNA sequence

ATGGGAAGTGCTCCTTCAAAGGCGAAAAATCAGGATCCTTCATTAATATTAATGGCGTTTCCTAATGGTCAGAACATGGCCAAGGCAATTGGATCCAACGAGCCTATAAAATCGACAATAAATGGGGAATCACATCCCATTGTTAGTGGGTCGAAAGATCATATTGGGCCAACTGATGGTAATAGGCCGAAACAAGGTTGGAAAAGGAAGGAAAGGGGAATCCAGATTAAGGAGATGGACTTGAATTTATCCAACCCGCTAATAGGGAAAAGGAAATTAGAAGGAATTTCTGCAGCAAGTGATGCTCCAACATTGACATGCTCTGGCACAACAACGCTCCGACATTTCTCCTCTAATCCTGGCATTCTCCTCACAAAGAGTTGTGAAGCTAGAGCTATCAAGGAGTGCCTCAAGCTCTATGAACGTGCTTCTTGTCAGATGATAAATCATGACAAATCAAGGCTAGCTTGCAGCCCAAATGCTGGTGCTTCTTTGAAAGAAAGGATGAAGGGAATCCTCTCAGTTTCTTTGGTAGATTGCCATCATCAATATCTTGGCCTTCCTTCCTTCATGCCGAGGAATAGATGTGGGAAGAAGGGCGAGAATAGTTTCCATCTATTCCTAGACTGTAAATTTTCGAGGAGTATATGGAATTCAGCTAAGTGGCCTGATTTTGAAGAAGTGATCGTTTATCTGTGGGCTATATGGGACAAGCGGAATGCTAAAGCTTTGAATAAGGGTGGTGATGGGTTTAGCACAAGCCCTAACCATGTGGTTTGGAAATCGCCTATATCAGGAGTCTACAAAATAAATACGGATGCATCTTTTAATCCACTTGATTTAAATGCAGGGCTAAGGATTATTATCAGAGATTCGAAAGGGCAAGTTCTGGCTGCTGAAACTAAATACCTGGATCATGCATTCTCGGTGGATGTTGTCGAAGCCTTAGCAGCGGAGGAGGGTCTGAAGCTAGCACTAGATATTGGAATTTCGCCACTTCAAGTCGAAATGAATTCTTTGCGAATTTTCAATCTATTTCTGCACAATAAAGGTGATTTATCAGAGGGATGGAAGAAGGTCATTTTGGGGTTGTCTCCCGGAGAGAGATTGTAA

Coding sequence (CDS)

ATGGGAAGTGCTCCTTCAAAGGCGAAAAATCAGGATCCTTCATTAATATTAATGGCGTTTCCTAATGGTCAGAACATGGCCAAGGCAATTGGATCCAACGAGCCTATAAAATCGACAATAAATGGGGAATCACATCCCATTGTTAGTGGGTCGAAAGATCATATTGGGCCAACTGATGGTAATAGGCCGAAACAAGGTTGGAAAAGGAAGGAAAGGGGAATCCAGATTAAGGAGATGGACTTGAATTTATCCAACCCGCTAATAGGGAAAAGGAAATTAGAAGGAATTTCTGCAGCAAGTGATGCTCCAACATTGACATGCTCTGGCACAACAACGCTCCGACATTTCTCCTCTAATCCTGGCATTCTCCTCACAAAGAGTTGTGAAGCTAGAGCTATCAAGGAGTGCCTCAAGCTCTATGAACGTGCTTCTTGTCAGATGATAAATCATGACAAATCAAGGCTAGCTTGCAGCCCAAATGCTGGTGCTTCTTTGAAAGAAAGGATGAAGGGAATCCTCTCAGTTTCTTTGGTAGATTGCCATCATCAATATCTTGGCCTTCCTTCCTTCATGCCGAGGAATAGATGTGGGAAGAAGGGCGAGAATAGTTTCCATCTATTCCTAGACTGTAAATTTTCGAGGAGTATATGGAATTCAGCTAAGTGGCCTGATTTTGAAGAAGTGATCGTTTATCTGTGGGCTATATGGGACAAGCGGAATGCTAAAGCTTTGAATAAGGGTGGTGATGGGTTTAGCACAAGCCCTAACCATGTGGTTTGGAAATCGCCTATATCAGGAGTCTACAAAATAAATACGGATGCATCTTTTAATCCACTTGATTTAAATGCAGGGCTAAGGATTATTATCAGAGATTCGAAAGGGCAAGTTCTGGCTGCTGAAACTAAATACCTGGATCATGCATTCTCGGTGGATGTTGTCGAAGCCTTAGCAGCGGAGGAGGGTCTGAAGCTAGCACTAGATATTGGAATTTCGCCACTTCAAGTCGAAATGAATTCTTTGCGAATTTTCAATCTATTTCTGCACAATAAAGGTGATTTATCAGAGGGATGGAAGAAGGTCATTTTGGGGTTGTCTCCCGGAGAGAGATTGTAA

Protein sequence

MGSAPSKAKNQDPSLILMAFPNGQNMAKAIGSNEPIKSTINGESHPIVSGSKDHIGPTDGNRPKQGWKRKERGIQIKEMDLNLSNPLIGKRKLEGISAASDAPTLTCSGTTTLRHFSSNPGILLTKSCEARAIKECLKLYERASCQMINHDKSRLACSPNAGASLKERMKGILSVSLVDCHHQYLGLPSFMPRNRCGKKGENSFHLFLDCKFSRSIWNSAKWPDFEEVIVYLWAIWDKRNAKALNKGGDGFSTSPNHVVWKSPISGVYKINTDASFNPLDLNAGLRIIIRDSKGQVLAAETKYLDHAFSVDVVEALAAEEGLKLALDIGISPLQVEMNSLRIFNLFLHNKGDLSEGWKKVILGLSPGERL

Homology

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BLAST of Moc06g12460 vs. NCBI nr
Match: XP_022139684.1 (uncharacterized protein LOC111010533 [Momordica charantia])

HSP 1 Score: 133.7 bits (335), Expect = 3.4e-27
Identity = 74/173 (42.77%), Postives = 99/173 (57.23%), Query Frame = 0


Query: 222 WPDFEEVIVYLWAIWDKRNAKALNKG--------------------------------GD 281
           W DFEE++V+LW++W++RNA   NK                                   
Sbjct: 14  WKDFEELVVFLWSLWNRRNAFVFNKRRVEDDDLAGWVSTYIATFKATNTNHATANQDVSQ 73

Query: 282 GFSTS------PNHVVWKSPISGVYKINTDASFNPLDLNAGLR-IIIRDSKGQVLAAETK 341
            F  S       NH +W     GV+K+ TDASF+ +D NAGL  IIIRD +GQVLA+ TK
Sbjct: 74  SFQQSSQIHQAQNHTIWCPAEEGVFKLKTDASFSSIDFNAGLGVIIIRDHRGQVLASATK 133

Query: 342 YLDHAFSVDVVEALAAEEGLKLALDIGISPLQVEMNSLRIFNLFLHNKGDLSE 356
           YL+H  SVD  EALAA EGL++A++ GISP+ +E +SLRI+NLF  +K  LS+
Sbjct: 134 YLEHVASVDDAEALAAVEGLRVAMETGISPILLETDSLRIYNLFARDKEGLSK 186

[Close]

BLAST of Moc06g12460 vs. NCBI nr
Match: XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia])

HSP 1 Score: 129.4 bits (324), Expect = 6.3e-26
Identity = 70/184 (38.04%), Postives = 100/184 (54.35%), Query Frame = 0


Query: 196  CGKKGENSFHLFLDCKFSRSIWNSAKW------------------PDFEEVIVYLWAIWD 255
            CG+ GE+S HLF  CKF+ ++W ++K+                   DFEE+ V +W +W+
Sbjct: 880  CGRNGEDSIHLFWICKFAEALWINSKFGKLSPFLILRESHESLSKADFEELCVVIWGLWN 939

Query: 256  KRNAKALNKGG-----------------------------DGFSTSPNHVVWKSPISGVY 315
            +RNA+A N                                 G  T+   ++W+ P  G+Y
Sbjct: 940  QRNARAFNDSTKTVFKIGMELVEWANKYAMEFREAKSNPITGRVTNTAEILWQPPDEGIY 999

Query: 316  KINTDASFNPLDLNAGLRIIIRDSKGQVLAAETKYLDHAFSVDVVEALAAEEGLKLALDI 333
            KINTDASF   D +AGL III + +GQV+AA TKYL++  SVD+ EA+AA EGL+LA +I
Sbjct: 1000 KINTDASFLASDQHAGLGIIIHNDRGQVMAAATKYLENIQSVDMAEAIAAVEGLQLASEI 1059

[Close]

BLAST of Moc06g12460 vs. NCBI nr
Match: XP_022140628.1 (uncharacterized protein LOC111011237 [Momordica charantia])

HSP 1 Score: 105.9 bits (263), Expect = 7.5e-19
Identity = 56/106 (52.83%), Postives = 74/106 (69.81%), Query Frame = 0


Query: 250 GFSTSPNHVVWKSPISGVYKINTDASFNPLDLNAGLRIIIRDSKGQVLAAETKYLDHAFS 309
           G  T+   V+W  P   +YKINTDASF   D +AGL IIIR+ +GQV+A+ TKYL++  S
Sbjct: 24  GRVTNTAEVLWLPPDKRIYKINTDASFLASDQHAGLGIIIRNDRGQVMASATKYLENIQS 83

Query: 310 VDVVEALAAEEGLKLALDIGISPLQVEMNSLRIFNLFLHNKGDLSE 356
           VD+ EA+ A EGL+LA  IG++P+ +E +S RIFNLF     DLSE
Sbjct: 84  VDMAEAIVAVEGLQLASKIGVNPVILETDSSRIFNLFSQPSEDLSE 129

[Close]

BLAST of Moc06g12460 vs. NCBI nr
Match: XP_030497588.1 (uncharacterized protein LOC115713245 [Cannabis sativa])

HSP 1 Score: 93.2 bits (230), Expect = 5.0e-15
Identity = 82/287 (28.57%), Postives = 127/287 (44.25%), Query Frame = 0


Query: 92  KLEGISAASDAPTLTCSGTTTLRHFSSNPGILLTKSCE--ARAIKECLKLYERASCQMIN 151
           +L+G + +  APT++         F ++  +L  ++ +    +IK  L +Y RAS Q +N
Sbjct: 642 RLKGYAVSRRAPTIS-------HLFFADDSLLFCQADDRSCGSIKRALNIYHRASGQELN 701

Query: 152 HDKSRLACSPNAGASLKERMKGILSVSLVDCHHQYLGLPSFMPRNRCGKKGENSFHLFLD 211
            DKS ++ SPN    ++   + IL + + DCH +YLGLP++  R++          LF D
Sbjct: 702 LDKSVMSFSPNTPPLVQHSFQNILGMPISDCHEKYLGLPAYSERDK--------KQLFAD 761

Query: 212 CKFSRSIWN-SAKWPD------FEEVIVYLWAIWDKRNAK-----ALNKGGDGFSTSPN- 271
            K    IW     W D       +E  +Y W      N       A        STSPN 
Sbjct: 762 IK--ERIWKLMNSWNDKLFSIGGKEEQLYSWQTRPLTNTNLGQTAAYYCNFQQHSTSPNS 821

Query: 272 ---------HVVWKSPISGVYKINTDASFNPLDLNAGLRIIIRDSKGQVLAAETKYLDHA 331
                    H  W  P     K+N DA+ +      G+ III++S GQV+AA +K L   
Sbjct: 822 IKDSTGAAAHPKWLRPPLDKLKMNVDAACDVSRNKIGVGIIIQNSSGQVVAANSKPLTGR 881

Query: 332 FSVDVVEALAAEEGLKLALDIGISPLQVEMNSLRIFNLFLHNKGDLS 355
           +    +EA A   G+  A    +S   +E +SL + N    N   +S
Sbjct: 882 YKPQEMEAKALILGIDCAALCNLSVNLLESDSLILVNSINSNSNAIS 911

[Close]

BLAST of Moc06g12460 vs. NCBI nr
Match: XP_022135942.1 (uncharacterized protein LOC111007775 [Momordica charantia])

HSP 1 Score: 90.9 bits (224), Expect = 2.5e-14
Identity = 53/165 (32.12%), Postives = 81/165 (49.09%), Query Frame = 0


Query: 221 KWPDFEEVIVYLWAIWDKRNAKALNKGGDGF----------------------------- 280
           KW   EE+ V+LWAIW+ RN +++   G GF                             
Sbjct: 5   KWTGLEELSVFLWAIWNARN-QSMFTNGHGFLLVNMVDWVADYLQVYQSAQEGPSLPLLL 64

Query: 281 -STSPNHVVWKSPISGVYKINTDASFNPLDLNAGLRIIIRDSKGQVLAAETKYLDHAFSV 340
                    W  P++  +K+N DA+F   + +AGL I+IRDS   VL +   ++ H   V
Sbjct: 65  DGRGGRVSAWCPPLAPFFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITHVSDV 124

Query: 341 DVVEALAAEEGLKLALDIGISPLQVEMNSLRIFNLFLHNKGDLSE 356
            + E LAA+EG+ LA++ G+ P Q+E +S ++FNL   +  D SE
Sbjct: 125 TLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESE 168

[Close]

BLAST of Moc06g12460 vs. ExPASy TrEMBL
Match: A0A6J1CDQ4 (uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010533 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.6e-27
Identity = 74/173 (42.77%), Postives = 99/173 (57.23%), Query Frame = 0


Query: 222 WPDFEEVIVYLWAIWDKRNAKALNKG--------------------------------GD 281
           W DFEE++V+LW++W++RNA   NK                                   
Sbjct: 14  WKDFEELVVFLWSLWNRRNAFVFNKRRVEDDDLAGWVSTYIATFKATNTNHATANQDVSQ 73

Query: 282 GFSTS------PNHVVWKSPISGVYKINTDASFNPLDLNAGLR-IIIRDSKGQVLAAETK 341
            F  S       NH +W     GV+K+ TDASF+ +D NAGL  IIIRD +GQVLA+ TK
Sbjct: 74  SFQQSSQIHQAQNHTIWCPAEEGVFKLKTDASFSSIDFNAGLGVIIIRDHRGQVLASATK 133

Query: 342 YLDHAFSVDVVEALAAEEGLKLALDIGISPLQVEMNSLRIFNLFLHNKGDLSE 356
           YL+H  SVD  EALAA EGL++A++ GISP+ +E +SLRI+NLF  +K  LS+
Sbjct: 134 YLEHVASVDDAEALAAVEGLRVAMETGISPILLETDSLRIYNLFARDKEGLSK 186

[Close]

BLAST of Moc06g12460 vs. ExPASy TrEMBL
Match: A0A6J1DAR4 (uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018954 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.1e-26
Identity = 70/184 (38.04%), Postives = 100/184 (54.35%), Query Frame = 0


Query: 196  CGKKGENSFHLFLDCKFSRSIWNSAKW------------------PDFEEVIVYLWAIWD 255
            CG+ GE+S HLF  CKF+ ++W ++K+                   DFEE+ V +W +W+
Sbjct: 880  CGRNGEDSIHLFWICKFAEALWINSKFGKLSPFLILRESHESLSKADFEELCVVIWGLWN 939

Query: 256  KRNAKALNKGG-----------------------------DGFSTSPNHVVWKSPISGVY 315
            +RNA+A N                                 G  T+   ++W+ P  G+Y
Sbjct: 940  QRNARAFNDSTKTVFKIGMELVEWANKYAMEFREAKSNPITGRVTNTAEILWQPPDEGIY 999

Query: 316  KINTDASFNPLDLNAGLRIIIRDSKGQVLAAETKYLDHAFSVDVVEALAAEEGLKLALDI 333
            KINTDASF   D +AGL III + +GQV+AA TKYL++  SVD+ EA+AA EGL+LA +I
Sbjct: 1000 KINTDASFLASDQHAGLGIIIHNDRGQVMAAATKYLENIQSVDMAEAIAAVEGLQLASEI 1059

[Close]

BLAST of Moc06g12460 vs. ExPASy TrEMBL
Match: A0A6J1CIF1 (uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011237 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.6e-19
Identity = 56/106 (52.83%), Postives = 74/106 (69.81%), Query Frame = 0


Query: 250 GFSTSPNHVVWKSPISGVYKINTDASFNPLDLNAGLRIIIRDSKGQVLAAETKYLDHAFS 309
           G  T+   V+W  P   +YKINTDASF   D +AGL IIIR+ +GQV+A+ TKYL++  S
Sbjct: 24  GRVTNTAEVLWLPPDKRIYKINTDASFLASDQHAGLGIIIRNDRGQVMASATKYLENIQS 83

Query: 310 VDVVEALAAEEGLKLALDIGISPLQVEMNSLRIFNLFLHNKGDLSE 356
           VD+ EA+ A EGL+LA  IG++P+ +E +S RIFNLF     DLSE
Sbjct: 84  VDMAEAIVAVEGLQLASKIGVNPVILETDSSRIFNLFSQPSEDLSE 129

[Close]

BLAST of Moc06g12460 vs. ExPASy TrEMBL
Match: A0A803Q5N4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-15
Identity = 84/270 (31.11%), Postives = 117/270 (43.33%), Query Frame = 0


Query: 130 ARAIKECLKLYERASCQMINHDKSRLACSPNAGASLKERMKGILSVSLVDCHHQYLGLPS 189
           ARAI  CL LY RAS QM+N +KS L+ SPN  +S +   + +L++ +  CH QYLGLPS
Sbjct: 439 ARAIHRCLDLYSRASGQMLNPEKSVLSFSPNTRSSEQLFFQELLNMPIQPCHEQYLGLPS 498

Query: 190 FMPRNRCGK---------KGENSFHLFL------DCKFSRSIW------NSAKWPDFE-- 249
           F  R++            K  N++   L      +   SR  W      N+  W +++  
Sbjct: 499 FSGRDKSQLFSGITDKIWKLMNAWREQLFSIGGKEQLMSRFWWGKSANGNAIHWKNWKFL 558

Query: 250 -------------EVIVYLWAIWDKRNAKALNKGGDGFSTS------------------- 309
                         + +   +  D  NA A   G      S                   
Sbjct: 559 CKAKIHGGRLNLPTITLPTDSPADAHNATAAT-GAHSLHLSAAISPEPLPHAYVPHTQVP 618

Query: 310 PNHVVWKSPISGVYKINTDASFNPLDLNAGLRIIIRDSKGQVLAAETKYLDHAFSVDVVE 345
           P    W +P SG  K+NTDA+ N      GL  I+RDS G VLAA  K +      + +E
Sbjct: 619 PTKPKWLAPPSGRLKLNTDAAVNVNTGVFGLAAILRDSNGDVLAAMVKPMKGCVKTEEME 678

[Close]

BLAST of Moc06g12460 vs. ExPASy TrEMBL
Match: A0A6J1C467 (uncharacterized protein LOC111007775 OS=Momordica charantia OX=3673 GN=LOC111007775 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-14
Identity = 53/165 (32.12%), Postives = 81/165 (49.09%), Query Frame = 0


Query: 221 KWPDFEEVIVYLWAIWDKRNAKALNKGGDGF----------------------------- 280
           KW   EE+ V+LWAIW+ RN +++   G GF                             
Sbjct: 5   KWTGLEELSVFLWAIWNARN-QSMFTNGHGFLLVNMVDWVADYLQVYQSAQEGPSLPLLL 64

Query: 281 -STSPNHVVWKSPISGVYKINTDASFNPLDLNAGLRIIIRDSKGQVLAAETKYLDHAFSV 340
                    W  P++  +K+N DA+F   + +AGL I+IRDS   VL +   ++ H   V
Sbjct: 65  DGRGGRVSAWCPPLAPFFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITHVSDV 124

Query: 341 DVVEALAAEEGLKLALDIGISPLQVEMNSLRIFNLFLHNKGDLSE 356
            + E LAA+EG+ LA++ G+ P Q+E +S ++FNL   +  D SE
Sbjct: 125 TLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESE 168

The following BLAST results are available for this feature:

BLAST of Moc06g12460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139684.1	3.4e-27	42.77	uncharacterized protein LOC111010533 [Momordica charantia]	[more]
XP_022150918.1	6.3e-26	38.04	uncharacterized protein LOC111018954 [Momordica charantia]	[more]
XP_022140628.1	7.5e-19	52.83	uncharacterized protein LOC111011237 [Momordica charantia]	[more]
XP_030497588.1	5.0e-15	28.57	uncharacterized protein LOC115713245 [Cannabis sativa]	[more]
XP_022135942.1	2.5e-14	32.12	uncharacterized protein LOC111007775 [Momordica charantia]	[more]

BLAST of Moc06g12460 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g12460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CDQ4	1.6e-27	42.77	uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1DAR4	3.1e-26	38.04	uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1CIF1	3.6e-19	52.83	uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A803Q5N4	1.4e-15	31.11	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A6J1C467	1.2e-14	32.12	uncharacterized protein LOC111007775 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]

BLAST of Moc06g12460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 265..362 e-value: 5.4E-5 score: 25.2
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 271..346 e-value: 1.6E-12 score: 47.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..69
None	No IPR available	PANTHER	PTHR47074	BNAC02G40300D PROTEIN	coord: 254..347
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 270..346 e-value: 1.4564E-8 score: 50.3904
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 267..358

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g12460.1	Moc06g12460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity