Moc06g11950 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g11950
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNA-binding family protein
Locationchr6: 9067485 .. 9073445 (-)
RNA-Seq ExpressionMoc06g11950
SyntenyMoc06g11950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGCGCTGATGTTGAGGCTGTGGACTTTGAGCCCGAGGAAGATGATCTCATGGACGAGGACGGAGCCGCCGAAGCCGACGCCTCCCCACGAGCTCCTTTTCCTAAGCTCAAATCCGCCATCACCGGCGGCGCCTCGTCCTCTCTCGCCGGTCCCAAGAAGACCAAGGGTCGTGGCTTCCGAGACGAATCCGATCGCAACACCCGTCTCGCCGGGTCCGACTTTGATTCCCTCAAGTCTGCTGATGGCCCCGGCCCCCAACGATGTTAGTTCTTCCTTGTCTCCTCCTCCTCATTACCTAGTTTGACAGATTGGTTTTCACCATTTTGTTTGTTGGGTTCTTTCCGTTCGTTATAGCTAGGGTTATGAAATTCTGGATGTTTATTTACTTTGTAGGTGGCGAGTTTAGATACATTGCCCCTTGGGTTGTGAGGGAAGTTATTTCTTTTCTTCTTGAATCTTCGGAAATTATAGGTTAGAGTAGACAAATCTTTCCCTTGAGCTTTTTAGGGGTTTTGCTTACTGTTGATGTCAGCTCGTGTGCCTTACTGTTTCAACAATGAACAGATCTTGGCTAAAATTTGATGTGGGAAATTATCATAGAGATAAGGATCGAAGTCTTGAAGTGGGAAGTTATGATGGAGCATCAACATTCTAGAGAGAATTCAAAGAATGAGTCTCAAAACCACTTTTCCATTCATTTGCCACCTCGCCTCCTGCTTTTGGAATTTCCTCTTTTCTTCTTATGAGCGGACGAACCCTTTGCACAGGGACATAAAGTTATCTCTCCACTCTATCCCGACTAACCACCCATTCAAGGAAAAGGCTAAATGCTTATGTTCGCTCAACCTGATTAGAGGTTGGTTTGTTGACTAACATAAAGACATCTCTCCATTTAATCATGACTAAATATCCCTTATTCAGCTTCATTTGGGATGGCCAACAGCATTGACCTTGTCTGGAAGTCCGCCAGCCAGGCTTTCCCTTTCTCTCAACAGTTTTGGCTGATTTCTTGAGCAATGGACTTCTGAGTTATGAGTCTACAGTGGCCAACATTATTGAAGGTCTTTACAACTGGTAGGGATCAGACCAATGTTTTTCTCATCTTCTATTTTTGGTGAGAGGATCTCTGGCTACTTATCTCAAAGGAAGACTTATATTCTCTCTAGGGGTGGAAGAATAACATTGGTTTGATTGGGTCAATCAATGATCTACTGCCCTCTTAGTTGCAGATGCCCATGCTTTGATTCGAAAGCCCTAGCCTGCTCCAAATTACCTTACTTTCTTTCCCTTTCTATGCCCCTTCAAAATTTATTTAGAAAATGGGGTTAGTTCAATTGATTCGTTCAAATGATCTTACTTCTCCTTTTTAAAATCCCATAAAAAATTATTAAGAGAATGGAGAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGAAACATCACTTTGAGAAATGAAAAATAGATACAAAAAACAAATACAAAAAATGGAGGCGAACAAAAACAGCCCTGCAAAAGGGAACCCCTAAAGAAACAGACTTCAATCCAAAAGAATAAAACCTAACTGATAATTACATAAGGTCTTAATGACCGATCCCCATAAAGAAGTATTAAACCTAATCAGGTACTCTTTTAAGGCGGGGCAAATACAGTGTGGCAGCCACATTGTGAAGTGCTCAATGTTCCTTTACATTCTGAAGGAGGTTTGGGCATTGCGTAAAATTAGGTAATTTAGCCCTTTTGGCCTAGTGGGGGTTGGGAGATTTCCCTTGGAAGACCATTCAACATCAACTAATTAAAAATCAAGGTTGGGCTGGATGGTCTCGGTTGGCTTACTTGTTCTTCACCATTCCTTTGTCCTAAATCTCCTTGGTTCCAAATCAAAAAATGTAGATCTTTAGTAGACCAGCTCTGCTATTTTAAGTTGGAAAATGGAAAAGAATTAAATTTAGGAAAGATTATTGGATTGGTTGGGTGTTTTAGAACTCTACTTGTTGCTAGGTCTTATGATCTCTCAAATATCCAATCTTTTTCAGTTCTAGAATCTAGATGTTTTGAGTTTTCAATTTTTGGGCTGGAACATTTTACCGAGACTTTCTTAAAGGTTGAAACTGAAAATGGACAAACTTTATAAATGAAATATCGTGTTTCATACCAAAAATGGATTAACTTTACCCTGATAATATAGAATTTGCTTCCAGATCAGATCGAAGATTCTAAAATGAATTTACGAGTAAATTAATGATTCAATGTAAGAATCTGTGTTTGACCTTTTATTCATTTATAAAGCTTCTTCATTGTAGGTTTAGGGTGCTAAACATAACCTAGGTTACTTCGTTGCATTTTTTCTTATGATCTCATGAGTTTAGAATAATCATGAATTTTCAAAAAGATCAAGACTATCCTAACCATGATTTAATGCTACAGTAAATTGTAGTCGGATAACTTATGCACTTGCTTCTGCAGGAAGGTGATGGATCCTTTGCTTCTTACTTTTCAAATTTAAAACATTTATTTTTGTTGATGGTGTCTGTTGCCATTGTTTAGGCTTTCCGAGCTTATCCTTGGCACTCTGTTGTCAGTGAGAAATGTTTAAATATGTGATCTTAATAGTTCATATGGAGGGTAATAGATCCTTTAGCTATTACACCTCAGATTAATTTATGATTTAAGTTACTGTGTGTACTGTGTAGCTATTGAAGGATGGATCATTCTGGTGACTGGTGTACATGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGAGTTTGGGGAGATAAAGAATTTGCATCTAAATCTTGATCGTCGTACTGGGTTTGTCAAGGTATATTTGGTTACTATACTATATTATTTAATTTTTTTAATCCTAAGGAAACAAGAATTACATATTTTTATCTGTTTCCTATTAGAGAGAAGAAAAATATGCATATACTTGGTTGTTTTAAACTAAAAAAAGTAGAATAACTAGGAATTTTTTAGAGGAATCCAGATAGAAATTTAATGTTTTGCTAATGATTGATGGATGGTTCGTAAGAAGAAAGTAGTATTGTGGAATTTATTTTTATATTTGAAAACAATTTTTTATCTGCGCATTCTCCCTTTTTCTAGGCAACATTAGTTCCACTACCATTCTTGAAAGCACAATAAATTGTTTTAGTATTAAACAGGGTGTTACCAAGTAGTTCCTCACCCTTTCTGGTGTACCTTTCCCCCTTCCTTTCGTAATTATATTTCTTTGTTAAGTCTACCAATTGGGGTAATTCTTTTCAAGCTCTATTGGTCTTATCTGAATATCTTTCTTGGTTGTATTAAAGGTGTTCATTATGAAAATTAATCAATTAATTTGATAAAAAAGGGGAAATTAATTAATTAAAGGAGTACAAAAGGCCAACTTGAGCATAGCTCAAGTGGTTAAGTACCCTTTTCTCTGCAATTTAATATTAAAAAGATATAAAAATTAAAGGAGTACAAAAGGCCAGAGGCCCAGAGGTTGTTAAGGCTATGTCCTCCACATAAGATCCTGCAGTACAAAGGAAACCAGCTCCAATGCAATAAATAAATCAAAGAAGGGGTACCAAAAGGTTGGAGTATAAGGTGTCCTCCACCCAAGATTTTACAGGACAGTTAACCAGCTACGATGGAATAAAGAACATTAATGTGTTTCAAATTGGCAAACACAAGATGAAAAAGCAGTTCAACTCTACTCAAGCTTCTGGAAAATTTATTGAATATGTCACGAACTTACTTGAACAAGTTCTGTTAGGTTGTACTATGTCCTTGAATTCAAAGATTCTTTAATATGCCATAATTTCATTAATGAAAGCTTTGAAATGCACCATCCAAAGAGTGCTAGGAAATTTTTATGAATAGAATCCTGATAAAGTAATGCAAGTGCACCTTGAGAATAGATAAAATCCAACAAACTCCTGACCCCTTGAGGATCTTGAAAGAAAGAACCTAGTGACGTTCCTACGAAGAAACCATCATAGAGTCGACTTTCACATTCATAATTCATCTAAATGGAGATAAGCAATGGAGACACTTTTATTTATTTTTCTCAGGTAAAGTTACATATCGATTGCCAACATAGATTGCTCATTCTAGAGTCAAACATGTGGATTTTCTTCTCCATAATTTTTTTATAAGAACAATTTCATTAATGTATGTAATTACAAAAGAGGGAGAAAAATCTCAATCCAAGGGAGTTACGAGAAACTTCCCCGATTGGACAAAAGTGTAAAGTAGCTATAAACATGAAAAAGTGATGAGAATTTACACCCTGAAATAGCTAGATAAACAATAGATTCAAAAAGCCTACAAAAATTTGCTCTTTAGCACAAAAGACCCTTTGGTTTGTCTCGTTCCATGTAACCCAAAGACATGGGCTAATGAAGTGCATCCAAAGAAGCTGCTTCTCTTTGTTGAAAGAGGGTGGCCCTTGAGTGTGTAACAGAGAATATTCTTTGTATTGGTAGGCAATGGCTAATGAAGTGCATCCAAAAACAAAAGACCCTTTGGTTTGTCTCATTCCATGTAGCCCAAAGACATGGGCTAATGAAGTGCATCCAAAGAAGCTGCTTCTCTTTGTTGAAAGGGTGGCCCTTGAGTATGTAAGAGAGAATATTCTTTGTATTGGTAGGCAAGGCTATTGACCAACTGAATGTTGAAAGCAATTTCTCCCAAAATCTCATTGCATAGCTACTACTACAAGTGAGCAAAATGTGGCTTTGAGACTTTATATCCTTCTTATAACGGAAGCACCATTGAGGAAAGTCGACATGCATGGTAATCAATGGTGAAACCTGTCAAAAGTATTGATGGCTCGGTGACCCAACTCAAAAAGAGAGAATTTAATCTTTTTTGGGTATTGATCTCTCCATATGAACTCATATAAGAGGGAATATGGAATGTGTAGATTCACCTTTAGCTTCAATGTCTAGGAGTAAGGATTTGGTGGAAAAGGACGCTTTTCTATCCAGCTCTCAAATCCGTAACTCCCCTCAGATTCAGTCATGTGGATCAACTTTCACGATAAAGTTGACTGGAGGGTTTTAAGATTCACATGAGGAAGTCCACAGCTAGTGCCATCAACCTCGTTGATCATCTCTTCCACCATTTTTTCTAAAGATAAGAAACAGAGAATGACATTCAAAGGGGCCTTAGCCGACAAAAACAATCTGTAGAACATAGGGACAAATGTTCCTTTTCCAAAGGGAATGGATCAAACAAAAGCCCTCCAATCCTAGTTAGGTACAAAGGAACAGTTCTTTTGAGCACTCCAATCCAAGGCTGTTAATGGTACAACATCACAAAAAAGTTCCTCTGAAAAAGTCCTAGCATTTCTTTCCTTGCATAGGAGCCAAGAAAGAGCTGTAGAGGTATTGGACTAGAGGACTCTGCCTTTTCCTTTGTACCTCGAGGAGCCACTCTCCCACCATTTCTTTTAACAGGCTTTGTTTTATAAGTTAAATTGTTAACCCAACCAACCTGTATGCTCGGCTTTAGAGCCACTTTTCTTTGGTTCGTATGATATTTGTTTCCAATATTATATCTTGACTACTATTTGAGTTTCATTATATTCCATCTATTTTGTGGGGGTATCTTTACCTAACTCTCAGATATTTACCAATTTTCTGCTGTGGCAATGTGACGACATTTTATTTTGGTTTCATGAAGGGTTATGCATTGATCGAATACGAGAGCTTTGAGGAAGCAGAGAGAGCCATATCTGCCATGGATGGATCTGAACTTCTGACCCAAATTATCAATGTCGATTGGGCATTCAGCCATGGACCCATCAGAAGAAAGAACACAAGGTATGCTTCTCAAAGCTTGGGGATAACCAAAGGTTTGCATTATGGGAAATTCACGAACCATATTTTTCCTAACTTAATTGCAGACCTACTCGGGAACGACGTTCAAGGAGCCCGAGGAGGAGATATTGA

mRNA sequence

ATGGCAAGCGCTGATGTTGAGGCTGTGGACTTTGAGCCCGAGGAAGATGATCTCATGGACGAGGACGGAGCCGCCGAAGCCGACGCCTCCCCACGAGCTCCTTTTCCTAAGCTCAAATCCGCCATCACCGGCGGCGCCTCGTCCTCTCTCGCCGGTCCCAAGAAGACCAAGGGTCGTGGCTTCCGAGACGAATCCGATCGCAACACCCGTCTCGCCGGGTCCGACTTTGATTCCCTCAAGTCTGCTGATGGCCCCGGCCCCCAACGATCTATTGAAGGATGGATCATTCTGGTGACTGGTGTACATGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGAGTTTGGGGAGATAAAGAATTTGCATCTAAATCTTGATCGTCGTACTGGGTTTGTCAAGGGTTATGCATTGATCGAATACGAGAGCTTTGAGGAAGCAGAGAGAGCCATATCTGCCATGGATGGATCTGAACTTCTGACCCAAATTATCAATGTCGATTGGGCATTCAGCCATGGACCCATCAGAAGAAAGAACACAAGACCTACTCGGGAACGACGTTCAAGGAGCCCGAGGAGGAGATATTGA

Coding sequence (CDS)

ATGGCAAGCGCTGATGTTGAGGCTGTGGACTTTGAGCCCGAGGAAGATGATCTCATGGACGAGGACGGAGCCGCCGAAGCCGACGCCTCCCCACGAGCTCCTTTTCCTAAGCTCAAATCCGCCATCACCGGCGGCGCCTCGTCCTCTCTCGCCGGTCCCAAGAAGACCAAGGGTCGTGGCTTCCGAGACGAATCCGATCGCAACACCCGTCTCGCCGGGTCCGACTTTGATTCCCTCAAGTCTGCTGATGGCCCCGGCCCCCAACGATCTATTGAAGGATGGATCATTCTGGTGACTGGTGTACATGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGAGTTTGGGGAGATAAAGAATTTGCATCTAAATCTTGATCGTCGTACTGGGTTTGTCAAGGGTTATGCATTGATCGAATACGAGAGCTTTGAGGAAGCAGAGAGAGCCATATCTGCCATGGATGGATCTGAACTTCTGACCCAAATTATCAATGTCGATTGGGCATTCAGCCATGGACCCATCAGAAGAAAGAACACAAGACCTACTCGGGAACGACGTTCAAGGAGCCCGAGGAGGAGATATTGA

Protein sequence

MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGPKKTKGRGFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRSRSPRRRY
Homology
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BLAST of Moc06g11950 vs. NCBI nr
Match: XP_022154366.1 (RNA-binding protein Y14A [Momordica charantia])

HSP 1 Score: 380.9 bits (977), Expect = 6.4e-102
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGPKKTKGRG 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGPKKTKGRG
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGPKKTKGRG 60

Query: 61  FRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEI 120
           FRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEI
Sbjct: 61  FRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEI 120

Query: 121 KNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGPIRRKN 180
           KNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGPIRRKN
Sbjct: 121 KNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGPIRRKN 180

Query: 181 TRPTRERRSRSPRRRY 197
           TRPTRERRSRSPRRRY
Sbjct: 181 TRPTRERRSRSPRRRY 196

[Close]
BLAST of Moc06g11950 vs. NCBI nr
Match: XP_038880227.1 (RNA-binding protein Y14A [Benincasa hispida])

HSP 1 Score: 370.9 bits (951), Expect = 6.6e-99
Identity = 192/197 (97.46%), Postives = 195/197 (98.98%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLA-GPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLA GPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFG+FGE
Sbjct: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGDFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAE+AISAMDG+ELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 197
           NTRP RERRSRSPRRRY
Sbjct: 181 NTRPARERRSRSPRRRY 197

[Close]
BLAST of Moc06g11950 vs. NCBI nr
Match: XP_022961208.1 (RNA-binding protein Y14-like [Cucurbita moschata] >XP_023516370.1 RNA-binding protein Y14-like [Cucurbita pepo subsp. pepo] >KAG6590187.1 RNA-binding protein Y14, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023840.1 RNA-binding protein Y14 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 369.8 bits (948), Expect = 1.5e-98
Identity = 191/197 (96.95%), Postives = 195/197 (98.98%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLA-GPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLA GPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRL GSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           I+NLHLNLDRRTGFVKGYALIEYE+FEEAE+AISAMDGSELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 197
           NTRPTRERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 197

[Close]
BLAST of Moc06g11950 vs. NCBI nr
Match: XP_004139049.1 (RNA-binding protein Y14 [Cucumis sativus] >XP_008450386.1 PREDICTED: RNA-binding protein 8A-B [Cucumis melo] >KGN66511.1 hypothetical protein Csa_007313 [Cucumis sativus])

HSP 1 Score: 367.5 bits (942), Expect = 7.3e-98
Identity = 190/197 (96.45%), Postives = 194/197 (98.48%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLA-GPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSL+ GPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60

Query: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAE+AISAMDG+ELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 197
           N RP RERRSRSPRRRY
Sbjct: 181 NARPARERRSRSPRRRY 197

[Close]
BLAST of Moc06g11950 vs. NCBI nr
Match: XP_022988215.1 (RNA-binding protein Y14A-like [Cucurbita maxima])

HSP 1 Score: 366.3 bits (939), Expect = 1.6e-97
Identity = 190/197 (96.45%), Postives = 193/197 (97.97%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLA-GPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASP APFPKLKSAITGGASSSLA GPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPLAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR ESDRNTRL GSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFRQESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           I+NLHLNLDRRTGFVKGYALIEYE+FEEAE+AISAMDGSELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 197
           NTRPTRERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 197

[Close]
BLAST of Moc06g11950 vs. ExPASy Swiss-Prot
Match: B7FAL5 (RNA-binding protein Y14A OS=Oryza sativa subsp. japonica OX=39947 GN=Y14A PE=1 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.2e-65
Identity = 138/205 (67.32%), Postives = 164/205 (80.00%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLA---GPKKTK 60
           + +ADVEAVDF+P++DDLMDED    AD +P AP P+L+S I GG         G +KTK
Sbjct: 4   VTNADVEAVDFDPDDDDLMDEDA---ADPTP-APAPRLRSTIAGGGGGGGGGDDGQRKTK 63

Query: 61  GRGFRDE-SDRNTRLAG----SDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQN 120
           GRGFRD+ + R++RLAG    SDFDSL S  GPGP RSIEGWI+LVTGVHEEAQEDDL N
Sbjct: 64  GRGFRDDAAPRDSRLAGAGRASDFDSLGSDGGPGPVRSIEGWIVLVTGVHEEAQEDDLHN 123

Query: 121 AFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFS 180
            F +FG++KNLHLNLDRRTGFVKGYALIEYE+FEEA+ AI A+DG+ELLTQII+VDWAFS
Sbjct: 124 IFRDFGQVKNLHLNLDRRTGFVKGYALIEYETFEEAQAAIKALDGTELLTQIISVDWAFS 183

Query: 181 HGPIRRKNTRPTRERRSRS-PRRRY 197
           +GP++R+N R    RRSRS PRRRY
Sbjct: 184 NGPVKRRNIRKRSPRRSRSPPRRRY 204

[Close]
BLAST of Moc06g11950 vs. ExPASy Swiss-Prot
Match: F4I9J7 (RNA-binding protein Y14 OS=Arabidopsis thaliana OX=3702 GN=Y14 PE=1 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.1e-64
Identity = 139/205 (67.80%), Postives = 161/205 (78.54%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAA--EADASPRAPFPKLKSAITGGASSSLAGPKKTKG 60
           MA+ + EAVDFEPEEDDLMDE+G A   AD SPRA  P+LKSAI G    S    KKTKG
Sbjct: 1   MANIESEAVDFEPEEDDLMDEEGTAIDGADVSPRAGHPRLKSAIAGANGES---AKKTKG 60

Query: 61  RGFRDE--SDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGE 120
           RGFR+E  SDR  RL+  DF+SL S   PGPQRS+EGWIILV+GVHEE QE+D+ NAFG+
Sbjct: 61  RGFREEKDSDRQRRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGD 120

Query: 121 FGEIKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGP- 180
           FGEIKNL+LNLDRR+G+VKGYALIEYE  EEA+ AISAM+G+ELLTQ ++VDWAFS GP 
Sbjct: 121 FGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGPS 180

Query: 181 ----IRRKNTRPTRERRSRSPRRRY 197
                RRKN+R  R +RSRSPRRRY
Sbjct: 181 GGESYRRKNSRYGRSQRSRSPRRRY 202

[Close]
BLAST of Moc06g11950 vs. ExPASy Swiss-Prot
Match: Q6ATR0 (RNA-binding protein Y14B OS=Oryza sativa subsp. japonica OX=39947 GN=Y14B PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.5e-40
Identity = 100/202 (49.50%), Postives = 130/202 (64.36%), Query Frame = 0 

Query: 2   ASADVEAVDF---EPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGPKKTKG 61
           A+ DVE VD+   E EE+D MDED           P P + S           G  +++G
Sbjct: 4   AAEDVEFVDYDRDEEEEEDAMDEDDRGGGRGGRALPVPHIVS----------QGVMRSRG 63

Query: 62  RGFRDESDRNTRLAGSD---FDSLKSADGP--GPQRSIEGWIILVTGVHEEAQEDDLQNA 121
           R       R+T +  S+   FDSL  A  P  GPQRSIEGWI+LV+GV E+A+EDDL N 
Sbjct: 64  RLL----GRSTSVLASNRDRFDSLADAGNPGHGPQRSIEGWILLVSGVKEDAEEDDLYNT 123

Query: 122 FGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSH 181
           F +FG +K+LHLNL+RRTG+ KGYAL+EYESFEEA+ AI AM+G++LLT+ + VDWAFS 
Sbjct: 124 FSDFGHVKDLHLNLERRTGYAKGYALVEYESFEEAQTAIKAMNGTQLLTRTVYVDWAFSR 183

Query: 182 GPIRRKNTRPTRERRSRSPRRR 196
           GPI++  +     RRSR+P RR
Sbjct: 184 GPIQKLTSTRPLHRRSRTPPRR 191

[Close]
BLAST of Moc06g11950 vs. ExPASy Swiss-Prot
Match: Q5D018 (RNA-binding protein 8A OS=Danio rerio OX=7955 GN=rbm8a PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.0e-38
Identity = 82/143 (57.34%), Postives = 106/143 (74.13%), Query Frame = 0 

Query: 54  KKTKGRGFRDESDRNTRLAGSDFDSL-KSADGPGPQRSIEGWIILVTGVHEEAQEDDLQN 113
           KK KGRGF  E    +R+   D+D++ +  D PGPQRS+EGWI+ VTGVHEEA E+D+ +
Sbjct: 33  KKRKGRGFGSEEGARSRVR-EDYDTVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDVHD 92

Query: 114 AFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFS 173
            F EFGEIKNLHLNLDRRTG++KGYAL+EYE+++EA+ A+  ++G EL+ Q I+VDW F 
Sbjct: 93  KFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGLNGQELMGQPISVDWCFV 152

Query: 174 HGPIRRKNTRPTRERRSRSPRRR 196
            GP   K+ R    RRSRSP RR
Sbjct: 153 RGP--PKSKRRGGRRRSRSPDRR 172

[Close]
BLAST of Moc06g11950 vs. ExPASy Swiss-Prot
Match: Q9DF42 (RNA-binding protein 8A-A OS=Xenopus laevis OX=8355 GN=rbm8a-a PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 8.9e-38
Identity = 81/143 (56.64%), Postives = 105/143 (73.43%), Query Frame = 0 

Query: 54  KKTKGRGFRDESDRNTRLAGSDFDSL-KSADGPGPQRSIEGWIILVTGVHEEAQEDDLQN 113
           KK KGRGF  +    TR+    +DS+ +  D PGPQRS+EGWI+ VTGVHEEA E+D+ +
Sbjct: 33  KKRKGRGFGADEGTKTRIR-EVYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHD 92

Query: 114 AFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFS 173
            FGEFGEIKN+HLNLDRRTGF+KGYAL+EYE+++EA  A+  ++G +L+ Q ++VDW F 
Sbjct: 93  KFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFV 152

Query: 174 HGPIRRKNTRPTRERRSRSPRRR 196
            GP   K  R +  RRSRSP RR
Sbjct: 153 RGP--PKGKRRSGRRRSRSPERR 172

[Close]
BLAST of Moc06g11950 vs. ExPASy TrEMBL
Match: A0A6J1DNH7 (RNA-binding protein Y14A OS=Momordica charantia OX=3673 GN=LOC111021647 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 3.1e-102
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGPKKTKGRG 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGPKKTKGRG
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGPKKTKGRG 60

Query: 61  FRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEI 120
           FRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEI
Sbjct: 61  FRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEI 120

Query: 121 KNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGPIRRKN 180
           KNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGPIRRKN
Sbjct: 121 KNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGPIRRKN 180

Query: 181 TRPTRERRSRSPRRRY 197
           TRPTRERRSRSPRRRY
Sbjct: 181 TRPTRERRSRSPRRRY 196

[Close]
BLAST of Moc06g11950 vs. ExPASy TrEMBL
Match: A0A6J1HB67 (RNA-binding protein Y14-like OS=Cucurbita moschata OX=3662 GN=LOC111461789 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 7.2e-99
Identity = 191/197 (96.95%), Postives = 195/197 (98.98%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLA-GPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLA GPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRL GSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           I+NLHLNLDRRTGFVKGYALIEYE+FEEAE+AISAMDGSELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 197
           NTRPTRERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 197

[Close]
BLAST of Moc06g11950 vs. ExPASy TrEMBL
Match: A0A0A0M2V3 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G616290 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.6e-98
Identity = 190/197 (96.45%), Postives = 194/197 (98.48%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLA-GPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSL+ GPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60

Query: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAE+AISAMDG+ELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 197
           N RP RERRSRSPRRRY
Sbjct: 181 NARPARERRSRSPRRRY 197

[Close]
BLAST of Moc06g11950 vs. ExPASy TrEMBL
Match: A0A1S3BNH9 (RNA-binding protein 8A-B OS=Cucumis melo OX=3656 GN=LOC103492008 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.6e-98
Identity = 190/197 (96.45%), Postives = 194/197 (98.48%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLA-GPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSL+ GPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60

Query: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAE+AISAMDG+ELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 197
           N RP RERRSRSPRRRY
Sbjct: 181 NARPARERRSRSPRRRY 197

[Close]
BLAST of Moc06g11950 vs. ExPASy TrEMBL
Match: A0A6J1JIZ0 (RNA-binding protein Y14A-like OS=Cucurbita maxima OX=3661 GN=LOC111485519 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 7.9e-98
Identity = 190/197 (96.45%), Postives = 193/197 (97.97%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLA-GPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASP APFPKLKSAITGGASSSLA GPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPLAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR ESDRNTRL GSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFRQESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           I+NLHLNLDRRTGFVKGYALIEYE+FEEAE+AISAMDGSELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 197
           NTRPTRERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 197

[Close]
BLAST of Moc06g11950 vs. TAIR 10
Match: AT1G51510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 247.7 bits (631), Expect = 7.9e-66
Identity = 139/205 (67.80%), Postives = 161/205 (78.54%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAA--EADASPRAPFPKLKSAITGGASSSLAGPKKTKG 60
           MA+ + EAVDFEPEEDDLMDE+G A   AD SPRA  P+LKSAI G    S    KKTKG
Sbjct: 1   MANIESEAVDFEPEEDDLMDEEGTAIDGADVSPRAGHPRLKSAIAGANGES---AKKTKG 60

Query: 61  RGFRDE--SDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGE 120
           RGFR+E  SDR  RL+  DF+SL S   PGPQRS+EGWIILV+GVHEE QE+D+ NAFG+
Sbjct: 61  RGFREEKDSDRQRRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGD 120

Query: 121 FGEIKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGP- 180
           FGEIKNL+LNLDRR+G+VKGYALIEYE  EEA+ AISAM+G+ELLTQ ++VDWAFS GP 
Sbjct: 121 FGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGPS 180

Query: 181 ----IRRKNTRPTRERRSRSPRRRY 197
                RRKN+R  R +RSRSPRRRY
Sbjct: 181 GGESYRRKNSRYGRSQRSRSPRRRY 202

[Close]
BLAST of Moc06g11950 vs. TAIR 10
Match: AT3G11400.1 (eukaryotic translation initiation factor 3G1 )

HSP 1 Score: 58.5 bits (140), Expect = 6.8e-09
Identity = 37/126 (29.37%), Postives = 67/126 (53.17%), Query Frame = 0 

Query: 45  GASSSLAGPKKTKGRGFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEE 104
           G SS+++    T    +   S R    AG+D    +SA G   +R  +   + VT + E+
Sbjct: 172 GESSTMSAAPGTGKAAYVPPSMR----AGAD----RSAVGSDMRRRNDENSVRVTNLSED 231

Query: 105 AQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQI 164
            +E DL   F  FG +  +++ +D++TG  +G+  + + S E+A+RAI+ ++G      I
Sbjct: 232 TREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLI 289

Query: 165 INVDWA 171
           + V+WA
Sbjct: 292 LRVEWA 289

[Close]
BLAST of Moc06g11950 vs. TAIR 10
Match: AT3G11400.2 (eukaryotic translation initiation factor 3G1 )

HSP 1 Score: 58.5 bits (140), Expect = 6.8e-09
Identity = 37/126 (29.37%), Postives = 67/126 (53.17%), Query Frame = 0 

Query: 45  GASSSLAGPKKTKGRGFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEE 104
           G SS+++    T    +   S R    AG+D    +SA G   +R  +   + VT + E+
Sbjct: 199 GESSTMSAAPGTGKAAYVPPSMR----AGAD----RSAVGSDMRRRNDENSVRVTNLSED 258

Query: 105 AQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQI 164
            +E DL   F  FG +  +++ +D++TG  +G+  + + S E+A+RAI+ ++G      I
Sbjct: 259 TREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLI 316

Query: 165 INVDWA 171
           + V+WA
Sbjct: 319 LRVEWA 316

[Close]
BLAST of Moc06g11950 vs. TAIR 10
Match: AT5G52040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-08
Identity = 44/147 (29.93%), Postives = 76/147 (51.70%), Query Frame = 0 

Query: 58  GRGFRDESDRNTR-LAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGE 117
           GR  R E  +N R  AG    S +S+ G  P ++    + ++    +  +  DL+  F  
Sbjct: 64  GRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKT----LFVINFDAQNTRTRDLERHFEP 123

Query: 118 FGEIKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAF----- 177
           +G+I N+ +         + +A I+YE+ E+A RA+ A + S+L+ ++I+V++A      
Sbjct: 124 YGKIVNVRIR--------RNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDS 183

Query: 178 ---SHGPIRRKNTRPTRERRSRSPRRR 196
               + P RR++  P R RRS SP RR
Sbjct: 184 RGNGYSPERRRDRSPDRRRRSPSPYRR 198

[Close]
BLAST of Moc06g11950 vs. TAIR 10
Match: AT5G52040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-08
Identity = 44/147 (29.93%), Postives = 76/147 (51.70%), Query Frame = 0 

Query: 58  GRGFRDESDRNTR-LAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGE 117
           GR  R E  +N R  AG    S +S+ G  P ++    + ++    +  +  DL+  F  
Sbjct: 64  GRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKT----LFVINFDAQNTRTRDLERHFEP 123

Query: 118 FGEIKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAF----- 177
           +G+I N+ +         + +A I+YE+ E+A RA+ A + S+L+ ++I+V++A      
Sbjct: 124 YGKIVNVRIR--------RNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDS 183

Query: 178 ---SHGPIRRKNTRPTRERRSRSPRRR 196
               + P RR++  P R RRS SP RR
Sbjct: 184 RGNGYSPERRRDRSPDRRRRSPSPYRR 198

The following BLAST results are available for this feature:
BLAST of Moc06g11950 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022154366.16.4e-102100.00RNA-binding protein Y14A [Momordica charantia][more]
XP_038880227.16.6e-9997.46RNA-binding protein Y14A [Benincasa hispida][more]
XP_022961208.11.5e-9896.95RNA-binding protein Y14-like [Cucurbita moschata] >XP_023516370.1 RNA-binding pr... [more]
XP_004139049.17.3e-9896.45RNA-binding protein Y14 [Cucumis sativus] >XP_008450386.1 PREDICTED: RNA-binding... [more]
XP_022988215.11.6e-9796.45RNA-binding protein Y14A-like [Cucurbita maxima][more]
BLAST of Moc06g11950 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
B7FAL52.2e-6567.32RNA-binding protein Y14A OS=Oryza sativa subsp. japonica OX=39947 GN=Y14A PE=1 S... [more]
F4I9J71.1e-6467.80RNA-binding protein Y14 OS=Arabidopsis thaliana OX=3702 GN=Y14 PE=1 SV=1[more]
Q6ATR02.5e-4049.50RNA-binding protein Y14B OS=Oryza sativa subsp. japonica OX=39947 GN=Y14B PE=1 S... [more]
Q5D0184.0e-3857.34RNA-binding protein 8A OS=Danio rerio OX=7955 GN=rbm8a PE=2 SV=1[more]
Q9DF428.9e-3856.64RNA-binding protein 8A-A OS=Xenopus laevis OX=8355 GN=rbm8a-a PE=2 SV=1[more]
BLAST of Moc06g11950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DNH73.1e-102100.00RNA-binding protein Y14A OS=Momordica charantia OX=3673 GN=LOC111021647 PE=4 SV=... [more]
A0A6J1HB677.2e-9996.95RNA-binding protein Y14-like OS=Cucurbita moschata OX=3662 GN=LOC111461789 PE=4 ... [more]
A0A0A0M2V33.6e-9896.45RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G616290 PE=4 SV... [more]
A0A1S3BNH93.6e-9896.45RNA-binding protein 8A-B OS=Cucumis melo OX=3656 GN=LOC103492008 PE=4 SV=1[more]
A0A6J1JIZ07.9e-9896.45RNA-binding protein Y14A-like OS=Cucurbita maxima OX=3661 GN=LOC111485519 PE=4 S... [more]
BLAST of Moc06g11950 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G51510.17.9e-6667.80RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT3G11400.16.8e-0929.37eukaryotic translation initiation factor 3G1 [more]
AT3G11400.26.8e-0929.37eukaryotic translation initiation factor 3G1 [more]
AT5G52040.12.0e-0829.93RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G52040.22.0e-0829.93RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008111RNA-binding motif protein 8PRINTSPR01738RNABINDINGM8coord: 141..157
score: 44.12
coord: 50..62
score: 51.54
coord: 159..171
score: 55.38
coord: 85..99
score: 79.33
IPR008111RNA-binding motif protein 8PANTHERPTHR45894RNA-BINDING PROTEIN 8Acoord: 2..196
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 95..168
e-value: 5.6E-19
score: 79.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 96..160
e-value: 2.8E-15
score: 55.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 94..172
score: 15.749695
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 38..189
e-value: 8.2E-30
score: 105.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 178..196
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..196
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..87
NoneNo IPR availablePANTHERPTHR45894:SF6RNA-BINDING PROTEIN Y14A-LIKEcoord: 2..196
IPR033744RBM8, RNA recognition motifCDDcd12324RRM_RBM8coord: 88..175
e-value: 8.03477E-61
score: 182.417
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 87..195

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g11950.1Moc06g11950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008380 RNA splicing
biological_process GO:0006396 RNA processing
cellular_component GO:0005737 cytoplasm
cellular_component GO:0035145 exon-exon junction complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding