Moc06g11940 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g11940
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr6: 9054504 .. 9054971 (+)
RNA-Seq Expression	Moc06g11940
Synteny	Moc06g11940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCAACCAGCGAATTCGACCAATACGACGGATCGAAGGACTCTGGCTGCCAGCGATGCCCACCAGAGGGAGGTCGGAGCAGCGGCGGTAGAGGGGCAAGGTCACGACGGCCTAGCAGGGGAACCCCTCCGCAGGTCGGCACGAATCACCGCGCCTGCCCTGCCGCCTGCACACCCGAGGACGTCCAAGGCCACCCGTGGTCGAGGTGGGACCTCTAAGAAGGGCGCCCGGGGTCCAGCCCCGGCTCCAACAAGCGAGGATTTTTATGCGCTCCAAAGAGAGATGGAGGCAATGCGCACGCAAATGCGCTCCATGGAGGCGATGTATAACGAAATGGTGTATAACGAGTTCAGGGTGCTCACTCTGTTTTGCATGCCTTCTGCGTGGTTTCCGAAGCTCATCTTTCGACTCATCCTAGCTGATCCGACGTTCGCGAAATTGGTCATTTTCTTAATCATTTTCTAG

mRNA sequence

ATGGTTCAACCAGCGAATTCGACCAATACGACGGATCGAAGGACTCTGGCTGCCAGCGATGCCCACCAGAGGGAGGTCGGAGCAGCGGCGGTAGAGGGGCAAGGTCACGACGGCCTAGCAGGGGAACCCCTCCGCAGGTCGGCACGAATCACCGCGCCTGCCCTGCCGCCTGCACACCCGAGGACGTCCAAGGCCACCCGTGGTCGAGGTGGGACCTCTAAGAAGGGCGCCCGGGGTCCAGCCCCGGCTCCAACAAGCGAGGATTTTTATGCGCTCCAAAGAGAGATGGAGGCAATGCGCACGCAAATGCGCTCCATGGAGGCGATGTATAACGAAATGGTGTATAACGAGTTCAGGGTGCTCACTCTGTTTTGCATGCCTTCTGCGTGGTTTCCGAAGCTCATCTTTCGACTCATCCTAGCTGATCCGACGTTCGCGAAATTGGTCATTTTCTTAATCATTTTCTAG

Coding sequence (CDS)

ATGGTTCAACCAGCGAATTCGACCAATACGACGGATCGAAGGACTCTGGCTGCCAGCGATGCCCACCAGAGGGAGGTCGGAGCAGCGGCGGTAGAGGGGCAAGGTCACGACGGCCTAGCAGGGGAACCCCTCCGCAGGTCGGCACGAATCACCGCGCCTGCCCTGCCGCCTGCACACCCGAGGACGTCCAAGGCCACCCGTGGTCGAGGTGGGACCTCTAAGAAGGGCGCCCGGGGTCCAGCCCCGGCTCCAACAAGCGAGGATTTTTATGCGCTCCAAAGAGAGATGGAGGCAATGCGCACGCAAATGCGCTCCATGGAGGCGATGTATAACGAAATGGTGTATAACGAGTTCAGGGTGCTCACTCTGTTTTGCATGCCTTCTGCGTGGTTTCCGAAGCTCATCTTTCGACTCATCCTAGCTGATCCGACGTTCGCGAAATTGGTCATTTTCTTAATCATTTTCTAG

Protein sequence

MVQPANSTNTTDRRTLAASDAHQREVGAAAVEGQGHDGLAGEPLRRSARITAPALPPAHPRTSKATRGRGGTSKKGARGPAPAPTSEDFYALQREMEAMRTQMRSMEAMYNEMVYNEFRVLTLFCMPSAWFPKLIFRLILADPTFAKLVIFLIIF

Homology

[Close]

BLAST of Moc06g11940 vs. NCBI nr
Match: XP_022159327.1 (uncharacterized protein LOC111025738 [Momordica charantia])

HSP 1 Score: 142.5 bits (358), Expect = 3.0e-30
Identity = 77/114 (67.54%), Postives = 87/114 (76.32%), Query Frame = 0


Query: 1   MVQPANSTNTTDRRTLAASDAHQREVGAAAVEGQGHDGLAGEPLRRSARITAPALPPAHP 60
           MVQP +STNT DRR L A+D HQREVGA  VEGQ H+GL  EP  RSARIT P L PAHP
Sbjct: 1   MVQPVDSTNTGDRRALVANDGHQREVGAEVVEGQIHEGLGTEPFCRSARITTPDLSPAHP 60

Query: 61  RTSKATRGRGGTSKKGARGPAPAPTSEDFYALQREMEAMRTQMRSMEAMYNEMV 115
           +  KA RGRGG S++   G APAP+ E+F ALQ+EMEAMRTQM +ME MYNEMV
Sbjct: 61  KPFKANRGRGGASRRTTLGAAPAPSRENFDALQKEMEAMRTQMLTMEEMYNEMV 114

[Close]

BLAST of Moc06g11940 vs. NCBI nr
Match: XP_022152854.1 (uncharacterized protein LOC111020479 [Momordica charantia])

HSP 1 Score: 95.5 bits (236), Expect = 4.3e-16
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1  MVQPANSTNTTDRRTLAASDAHQREVGAAAVEGQGHDGLAGEPLRRSARITAPALPPAHP 60
          MVQPANSTNT DRR LAA+  HQREVGA  VEGQGH+ L  EPL RSARIT P LPPAHP
Sbjct: 1  MVQPANSTNTADRRALAANHGHQREVGAEVVEGQGHEDLGTEPLCRSARITTPVLPPAHP 60

Query: 61 RTSKA 66
          + SKA
Sbjct: 61 KPSKA 65

[Close]

BLAST of Moc06g11940 vs. NCBI nr
Match: XP_022156638.1 (uncharacterized protein LOC111023488 [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-05
Identity = 35/71 (49.30%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 1  MVQPANSTNTTDRRTLAASDAHQREVGAAAVEGQGHDGLAGEPLRRSARITAPALPPAHP 60
          MVQP  S NT +RR L  ++  Q E+ A   E Q   G   +P RRS R     LPPAHP
Sbjct: 1  MVQPIESANTAERRALNGNNDAQHELDAKVTEEQTKAGQEVDPPRRSTRNANTILPPAHP 60

Query: 61 RTSKATRGRGG 72
          R+ KA RGRGG
Sbjct: 61 RSGKANRGRGG 71

[Close]

BLAST of Moc06g11940 vs. ExPASy TrEMBL
Match: A0A6J1DZJ1 (uncharacterized protein LOC111025738 OS=Momordica charantia OX=3673 GN=LOC111025738 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.5e-30
Identity = 77/114 (67.54%), Postives = 87/114 (76.32%), Query Frame = 0


Query: 1   MVQPANSTNTTDRRTLAASDAHQREVGAAAVEGQGHDGLAGEPLRRSARITAPALPPAHP 60
           MVQP +STNT DRR L A+D HQREVGA  VEGQ H+GL  EP  RSARIT P L PAHP
Sbjct: 1   MVQPVDSTNTGDRRALVANDGHQREVGAEVVEGQIHEGLGTEPFCRSARITTPDLSPAHP 60

Query: 61  RTSKATRGRGGTSKKGARGPAPAPTSEDFYALQREMEAMRTQMRSMEAMYNEMV 115
           +  KA RGRGG S++   G APAP+ E+F ALQ+EMEAMRTQM +ME MYNEMV
Sbjct: 61  KPFKANRGRGGASRRTTLGAAPAPSRENFDALQKEMEAMRTQMLTMEEMYNEMV 114

[Close]

BLAST of Moc06g11940 vs. ExPASy TrEMBL
Match: A0A6J1DHB3 (uncharacterized protein LOC111020479 OS=Momordica charantia OX=3673 GN=LOC111020479 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.1e-16
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1  MVQPANSTNTTDRRTLAASDAHQREVGAAAVEGQGHDGLAGEPLRRSARITAPALPPAHP 60
          MVQPANSTNT DRR LAA+  HQREVGA  VEGQGH+ L  EPL RSARIT P LPPAHP
Sbjct: 1  MVQPANSTNTADRRALAANHGHQREVGAEVVEGQGHEDLGTEPLCRSARITTPVLPPAHP 60

Query: 61 RTSKA 66
          + SKA
Sbjct: 61 KPSKA 65

[Close]

BLAST of Moc06g11940 vs. ExPASy TrEMBL
Match: A0A6J1DR60 (uncharacterized protein LOC111023488 OS=Momordica charantia OX=3673 GN=LOC111023488 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-05
Identity = 35/71 (49.30%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 1  MVQPANSTNTTDRRTLAASDAHQREVGAAAVEGQGHDGLAGEPLRRSARITAPALPPAHP 60
          MVQP  S NT +RR L  ++  Q E+ A   E Q   G   +P RRS R     LPPAHP
Sbjct: 1  MVQPIESANTAERRALNGNNDAQHELDAKVTEEQTKAGQEVDPPRRSTRNANTILPPAHP 60

Query: 61 RTSKATRGRGG 72
          R+ KA RGRGG
Sbjct: 61 RSGKANRGRGG 71

The following BLAST results are available for this feature:

BLAST of Moc06g11940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159327.1	3.0e-30	67.54	uncharacterized protein LOC111025738 [Momordica charantia]	[more]
XP_022152854.1	4.3e-16	75.38	uncharacterized protein LOC111020479 [Momordica charantia]	[more]
XP_022156638.1	2.6e-05	49.30	uncharacterized protein LOC111023488 [Momordica charantia]	[more]

BLAST of Moc06g11940 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g11940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZJ1	1.5e-30	67.54	uncharacterized protein LOC111025738 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DHB3	2.1e-16	75.38	uncharacterized protein LOC111020479 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1DR60	1.3e-05	49.30	uncharacterized protein LOC111023488 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of Moc06g11940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g11940.1	Moc06g11940.1	mRNA