Moc06g11670 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g11670
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrotransposable element Tf2
Location	chr6: 8820979 .. 8822830 (-)
RNA-Seq Expression	Moc06g11670
Synteny	Moc06g11670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGTAGAAAATTACGCCATGGATATTCAGTTCGAGACAATATCCAGACGTCAACAAGGTTCTTCACAAAAGACCTTGTCAATTCAATCAGGCCCTTCTAGCCTTCCAATTCCTTCAAGTACGTTGTTACGCCCTTTCGGCACTACAACGAAAAGCAGGCGTCCTACTACAGCGGCCGCCTCTTCAAAATCTACTATTCCGAGGAATCCTTCCTCGTTCTCCCAAATTGTCAGGCCAAAGGTTTTTCAGCCAAGGCCCCCAATCAATGGTTATTTCACCAAAACTACCGTGGTGGATTCAACCATCGAACCAGAATTCGACGGACCTTTGGTCCAAGAAGTCTGCAAACAAATATTTCCTCACGACTTTAACTTCTTGCCAGAGGATCTTCAAAAGGCTCGCACCTTTTATGAGTTTATTCTGGTTGACTCTAAATCAACAGAAATAACTCACGTTCCAGATAAAAATGATCCTTCCAGGACCATTTATTCAAAATTTTCCATTTATTTAAAATTGTAGCAAGTTGCAATTATTAGTTCTTTTTTATATATAGCACTTGGCCTCGACCAGAAATGGTATCAGAGCCACTCCGACATTTCTTTTCTTCTCTCTTCTCTTTCATGGAATAGACTCCTCTCTGAGTCTGGGGGTGGAAGGGAAGATGGATCTAATCTCTCTTTAAGATTATATTATTTCCTTATGATTCTTAATCTATCTATTAATGAAATCAAATTCGGGTATCTCTCTTATTCGATTCTTCTTGATATTCTCTAGCTACTTATTCTCAGAAATCATGATAAAGGCGTGGTTAATCTTCATGATTGAGGATTTCTAGTTAAGGAATATGAAAAAGCTTGGATATAGATCGATCGATCAAAGAATTTGATTTAATTAAAAGATAGATTATTATCATAATTAAAGAATATACTCTTATTAAGATTTTATTTCAATCTCCTTGATATCACCAGATTCTTTCTTTCCCTTTCTCTTATGCTCTCCAAACTTCTCTCTAAAATCTCTCCCCACTCTCAAACAATCATAGATACAGCTTCCTCTTATTCCTCTTCTTCGAGGAAACAAAAATTTGTTGAAGGACTTCCGCATTATATTGCTCAAAGATTTTATCAAGCGGCAGTAGCAAACTCTACAACCAATCAGATCAATTGGTCGGAGTTAACCATTGACGCATATTCCTTGTCATTTCAGGTCGAAGCCAAGTGCTATATATAGAAAAGAACCAATAATTGCAACTTGCTACAATTATTGATTTTTTCTATTGTCTTGACACTTGTCTCAACATAATTGGATACATCAAAAGAGATAAAGATTAGCTGACAAGACAAGTCCTTGACTGGCATCTTATCTCTTTGGAATCTAATTTATAAAAAGTAAAGATAAGCGTGGCCGACACGGGGCATCTTATCTTTCAAAAGGAAATAAAGTAAAGCGGAAAATTATTACAAACTGGCAAATTAAAGTAAAGACAGAAAGTAAAAGCTGATATGACTGTTTTCGGACTGGAAACTTGCTTCAGAAGTTTTGATGAAGTCACCCGGCTTCTTCTGATTTGGCGAGGATTACGGATTCTGTATATCATCGTATAGGCTTCTCCGGTGTCTGATTAGGCCATTCCATCCACGGTCTTACTCACGGCCTCTCGCCTAAACTGCCCAAGGAACACCTTCGATCTTCGACCAGGGTTGCCTTGTGAGATATAGAATCCTCTCGACTGAGTCAATCCTTTACGCTAACTGCGCTGCATTGTGGTTGGTTATTCCACATCAGGAGCTCGCCATCTACTTCATCTGAATTTCTTCTGCAGTTCCTTCACGAAATCAGACAGGGATAG

mRNA sequence

ATGAGTGTAGAAAATTACGCCATGGATATTCAGTTCGAGACAATATCCAGACGTCAACAAGGTTCTTCACAAAAGACCTTGTCAATTCAATCAGGCCCTTCTAGCCTTCCAATTCCTTCAAGTACGTTGTTACGCCCTTTCGGCACTACAACGAAAAGCAGGCGTCCTACTACAGCGGCCGCCTCTTCAAAATCTACTATTCCGAGGAATCCTTCCTCGTTCTCCCAAATTGTCAGGCCAAAGGTTTTTCAGCCAAGGCCCCCAATCAATGGCCATTCCATCCACGGTCTTACTCACGGCCTCTCGCCTAAACTGCCCAAGGAACACCTTCGATCTTCGACCAGGGTTGCCTTGAGCTCGCCATCTACTTCATCTGAATTTCTTCTGCAGTTCCTTCACGAAATCAGACAGGGATAG

Coding sequence (CDS)

ATGAGTGTAGAAAATTACGCCATGGATATTCAGTTCGAGACAATATCCAGACGTCAACAAGGTTCTTCACAAAAGACCTTGTCAATTCAATCAGGCCCTTCTAGCCTTCCAATTCCTTCAAGTACGTTGTTACGCCCTTTCGGCACTACAACGAAAAGCAGGCGTCCTACTACAGCGGCCGCCTCTTCAAAATCTACTATTCCGAGGAATCCTTCCTCGTTCTCCCAAATTGTCAGGCCAAAGGTTTTTCAGCCAAGGCCCCCAATCAATGGCCATTCCATCCACGGTCTTACTCACGGCCTCTCGCCTAAACTGCCCAAGGAACACCTTCGATCTTCGACCAGGGTTGCCTTGAGCTCGCCATCTACTTCATCTGAATTTCTTCTGCAGTTCCTTCACGAAATCAGACAGGGATAG

Protein sequence

MSVENYAMDIQFETISRRQQGSSQKTLSIQSGPSSLPIPSSTLLRPFGTTTKSRRPTTAAASSKSTIPRNPSSFSQIVRPKVFQPRPPINGHSIHGLTHGLSPKLPKEHLRSSTRVALSSPSTSSEFLLQFLHEIRQG

Homology

[Close]

BLAST of Moc06g11670 vs. NCBI nr
Match: KAA0038028.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 3.8e-24
Identity = 66/94 (70.21%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MSVENYAMDIQFETISRRQQGSSQKTLSIQSGPSSL-PIPSSTLLRPFGTTTKSRRPTT- 60
          MS ENYAMD+QFE +SRR+QGS+Q+TL+IQS  SSL PIPS+ LLRP G TT ++R  + 
Sbjct: 1  MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASP 60

Query: 61 AAASSKSTIPRNPSSFSQIVRPKVFQPRPPINGH 93
          AA+SS+S IPRNPSS+SQIVRPK+FQPRPPING+
Sbjct: 61 AASSSRSVIPRNPSSYSQIVRPKIFQPRPPINGY 94

[Close]

BLAST of Moc06g11670 vs. NCBI nr
Match: KAA0037879.1 (26S proteasome regulatory subunit 4-like protein B-like [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 3.8e-24
Identity = 66/94 (70.21%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MSVENYAMDIQFETISRRQQGSSQKTLSIQSGPSSL-PIPSSTLLRPFGTTTKSRRPTT- 60
          MS ENYAMD+QFE +SRR+QGS+Q+TL+IQS  SSL PIPS+ LLRP G TT ++R  + 
Sbjct: 1  MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASP 60

Query: 61 AAASSKSTIPRNPSSFSQIVRPKVFQPRPPINGH 93
          AA+SS+S IPRNPSS+SQIVRPK+FQPRPPING+
Sbjct: 61 AASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGY 94

[Close]

BLAST of Moc06g11670 vs. NCBI nr
Match: KAA0063832.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 3.8e-24
Identity = 66/94 (70.21%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MSVENYAMDIQFETISRRQQGSSQKTLSIQSGPSSL-PIPSSTLLRPFGTTTKSRRPTT- 60
          MS ENYAMD+QFE +SRR+QGS+Q+TL+IQS  SSL PIPS+ LLRP G TT ++R  + 
Sbjct: 1  MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASP 60

Query: 61 AAASSKSTIPRNPSSFSQIVRPKVFQPRPPINGH 93
          AA+SS+S IPRNPSS+SQIVRPK+FQPRPPING+
Sbjct: 61 AASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGY 94

[Close]

BLAST of Moc06g11670 vs. NCBI nr
Match: TYJ98086.1 (hypothetical protein E5676_scaffold565G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 3.8e-24
Identity = 66/94 (70.21%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MSVENYAMDIQFETISRRQQGSSQKTLSIQSGPSSL-PIPSSTLLRPFGTTTKSRRPTT- 60
          MS ENYAMD+QFE +SRR+QGS+Q+TL+IQS  SSL PIPS+ LLRP G TT ++R  + 
Sbjct: 1  MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASP 60

Query: 61 AAASSKSTIPRNPSSFSQIVRPKVFQPRPPINGH 93
          AA+SS+S IPRNPSS+SQIVRPK+FQPRPPING+
Sbjct: 61 AASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGY 94

[Close]

BLAST of Moc06g11670 vs. NCBI nr
Match: KAA0056777.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ97600.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21092.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 3.8e-24
Identity = 66/94 (70.21%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MSVENYAMDIQFETISRRQQGSSQKTLSIQSGPSSL-PIPSSTLLRPFGTTTKSRRPTT- 60
          MS ENYAMD+QFE +SRR+QGS+Q+TL+IQS  SSL PIPS+ LLRP G TT ++R  + 
Sbjct: 1  MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASP 60

Query: 61 AAASSKSTIPRNPSSFSQIVRPKVFQPRPPINGH 93
          AA+SS+S IPRNPSS+SQIVRPK+FQPRPPING+
Sbjct: 61 AASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGY 94

[Close]

BLAST of Moc06g11670 vs. ExPASy TrEMBL
Match: A0A5A7UVN1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00580 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.8e-24
Identity = 66/94 (70.21%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MSVENYAMDIQFETISRRQQGSSQKTLSIQSGPSSL-PIPSSTLLRPFGTTTKSRRPTT- 60
          MS ENYAMD+QFE +SRR+QGS+Q+TL+IQS  SSL PIPS+ LLRP G TT ++R  + 
Sbjct: 1  MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASP 60

Query: 61 AAASSKSTIPRNPSSFSQIVRPKVFQPRPPINGH 93
          AA+SS+S IPRNPSS+SQIVRPK+FQPRPPING+
Sbjct: 61 AASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGY 94

[Close]

BLAST of Moc06g11670 vs. ExPASy TrEMBL
Match: A0A5A7T991 (26S proteasome regulatory subunit 4-like protein B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G00460 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.8e-24
Identity = 66/94 (70.21%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MSVENYAMDIQFETISRRQQGSSQKTLSIQSGPSSL-PIPSSTLLRPFGTTTKSRRPTT- 60
          MS ENYAMD+QFE +SRR+QGS+Q+TL+IQS  SSL PIPS+ LLRP G TT ++R  + 
Sbjct: 1  MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASP 60

Query: 61 AAASSKSTIPRNPSSFSQIVRPKVFQPRPPINGH 93
          AA+SS+S IPRNPSS+SQIVRPK+FQPRPPING+
Sbjct: 61 AASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGY 94

[Close]

BLAST of Moc06g11670 vs. ExPASy TrEMBL
Match: A0A5A7V6D1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00540 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.8e-24
Identity = 66/94 (70.21%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MSVENYAMDIQFETISRRQQGSSQKTLSIQSGPSSL-PIPSSTLLRPFGTTTKSRRPTT- 60
          MS ENYAMD+QFE +SRR+QGS+Q+TL+IQS  SSL PIPS+ LLRP G TT ++R  + 
Sbjct: 1  MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASP 60

Query: 61 AAASSKSTIPRNPSSFSQIVRPKVFQPRPPINGH 93
          AA+SS+S IPRNPSS+SQIVRPK+FQPRPPING+
Sbjct: 61 AASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGY 94

[Close]

BLAST of Moc06g11670 vs. ExPASy TrEMBL
Match: A0A5A7VIK9 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001410 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.8e-24
Identity = 66/94 (70.21%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MSVENYAMDIQFETISRRQQGSSQKTLSIQSGPSSL-PIPSSTLLRPFGTTTKSRRPTT- 60
          MS ENYAMD+QFE +SRR+QGS+Q+TL+IQS  SSL PIPS+ LLRP G TT ++R  + 
Sbjct: 1  MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASP 60

Query: 61 AAASSKSTIPRNPSSFSQIVRPKVFQPRPPINGH 93
          AA+SS+S IPRNPSS+SQIVRPK+FQPRPPING+
Sbjct: 61 AASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGY 94

[Close]

BLAST of Moc06g11670 vs. ExPASy TrEMBL
Match: A0A5A7T5B0 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002250 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.8e-24
Identity = 66/94 (70.21%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MSVENYAMDIQFETISRRQQGSSQKTLSIQSGPSSL-PIPSSTLLRPFGTTTKSRRPTT- 60
          MS ENYAMD+QFE +SRR+QGS+Q+TL+IQS  SSL PIPS+ LLRP G TT ++R  + 
Sbjct: 1  MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASP 60

Query: 61 AAASSKSTIPRNPSSFSQIVRPKVFQPRPPINGH 93
          AA+SS+S IPRNPSS+SQIVRPK+FQPRPPING+
Sbjct: 61 AASSSRSVIPRNPSSYSQIVRPKIFQPRPPINGY 94

The following BLAST results are available for this feature:

BLAST of Moc06g11670 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038028.1	3.8e-24	70.21	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0037879.1	3.8e-24	70.21	26S proteasome regulatory subunit 4-like protein B-like [Cucumis melo var. makuw...	[more]
KAA0063832.1	3.8e-24	70.21	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
TYJ98086.1	3.8e-24	70.21	hypothetical protein E5676_scaffold565G00190 [Cucumis melo var. makuwa]	[more]
KAA0056777.1	3.8e-24	70.21	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotran...	[more]

BLAST of Moc06g11670 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g11670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UVN1	1.8e-24	70.21	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7T991	1.8e-24	70.21	26S proteasome regulatory subunit 4-like protein B-like OS=Cucumis melo var. mak...	[more]
A0A5A7V6D1	1.8e-24	70.21	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7VIK9	1.8e-24	70.21	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7T5B0	1.8e-24	70.21	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002250 PE...	[more]

BLAST of Moc06g11670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g11670.1	Moc06g11670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901800	positive regulation of proteasomal protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000502	proteasome complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0036402	proteasome-activating activity