Moc06g11350 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g11350
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr6: 8617982 .. 8619744 (-)
RNA-Seq Expression	Moc06g11350
Synteny	Moc06g11350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATCGGCGCTCCAGAGTCCTCATGGATGGACCCGATTGCGGACTTCATTAGGGGCAATTCACCACAAGACCCCAAGGAGCGCAGAAAGTTAGCAAGGCGAGCAGCTCGGTTCGTGGTCCGAGGTGGAGCATTTTACCGACGCGGCTTTTCCCTGCCTCTATTGAGATGCCTAACCCCTGAAGAGGGTCTGTACGTCCTCAGAGAAATCCACGAAGGAGTGTGCGGCAATCACTCAGGCGCCCGGTCGCTGTCAGCCAAAGTGATCCGACAAGGATACTATTGGCCGACCCTCAGCCAGGACGCCAAGAAGTTCGTTAGAACTTGCGACAATTGCCAACGCTACGGAACCATAATCCACCAACCTCCCGAGCTGCTCACCCCCATCTCGGCCCCGTGGCCATTCGCGCAGTGGGGGGTAGATATCATTGGTCCTTTCCCTTTGGGCAAGGGCCAGACCAAGTTCGCTGTGGTTGCTGTGGATTACTTCACAAAGTGGGCCGAGGCCGATGCGCTCTCCCACATAACGGAATCCAGAGTCACGTCCTTCGTATGGACAAATATCATATGTCGCTTTGGTATACCGCAGGCCATTGTGACAGACAATGGGAAGCAGTTTGACAACGCCAAGTTCAAAGACTTTTGCAGCAAGCTTGGCATAAGTCACCTTAGCTCGTCCCCCGCACATCCGCAAGCAAATGGGCAGGTGGAGGCAGTGAATAAGATCATCAAGCGAGGCATCAAACTTAGACTGGACTCCAAGAAAGGCAGGTGGGCCGAGGAGCTACCAGAGGTTCTATGGTCGTACCGGACCACCCAAAGAAAATCAACGGGTGAGACCCCGTTCTCCCTGGCCTTCGGTTCCGAAGCTGTAATCCCGGTTGAGATCGGCATGCCATCTGACAGAGTAGAGCATTACGAGCCTACGGCAAATGAGGAAGAGCTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCAGAATGGTCAGACATTACAACGCCCGCGTTCGACCTCGGACCTTCCAGGTCGGACATCTGGTCTTAAGAAGGGTCCAAACCCATGTGGGTGCCCTTGATCCGACTTGGGAGGGCCCGTTTGAGGTCAAGGGCATAGTCCGACCTGGGACGTACATATTGGCCGATCTGAAAGGAGACGTCCTCACACACCCGTGGAACGCGGAGCACCTGAAGCGTTATTATCCTTGAAATGTCAAAAGGGTTTTCAATGGATCTATAAAAACTGTTTCAAAAGAATTATGATCGGAATAAATGTGATGATTTAATTTCATGATTCCGAGTTCGACCAGAAATTAAATGGGGGCCACGGACTCCCACGCGATCACATTCCAGCAGTCGGTTAAAATTCAATCCTCCAAAACCTAAGGGTACGAGGTGCGATGCCAAAACCTAAGGGTACGAGGTGCGATGCCAAAACCACTGATGAACTTAAAATTCAAACCTCCAAGGTAAAGGGACGATGTGAAAAGTTCAAAATGATCAAGCCTCTGAACCTGAGGGTACGATGTACGATATGAAGAACAGCTACGGACTTAGGATTTTAGCCTTTTAACGTTTTTAAGTTAAGGGTGCGATGTTAAAAAATCCAGAGTTGGTGCAATGCATTGAACACTAGACAGAGATACAAATTCAAAGATGTTGCCAACACCAAAGTAAAAACGAACAAAGCTTCTTCATTAAATGGAGAGCAGAGCCAAGGCTTATAG

mRNA sequence

ATGGAGATCGGCGCTCCAGAGTCCTCATGGATGGACCCGATTGCGGACTTCATTAGGGGCAATTCACCACAAGACCCCAAGGAGCGCAGAAAGTTAGCAAGGCGAGCAGCTCGGTTCGTGGTCCGAGGTGGAGCATTTTACCGACGCGGCTTTTCCCTGCCTCTATTGAGATGCCTAACCCCTGAAGAGGGTCTGGTACGAGGTGCGATGCCAAAACCTAAGGGTACGAGGTGCGATGCCAAAACCACTGATGAACTTAAAATTCAAACCTCCAAGGTAAAGGGACGATGTGAAAAGTTCAAAATGATCAAGCCTCTGAACCTGAGGAGTTGGTGCAATGCATTGAACACTAGACAGAGATACAAATTCAAAGATGTTGCCAACACCAAAGTAAAAACGAACAAAGCTTCTTCATTAAATGGAGAGCAGAGCCAAGGCTTATAG

Coding sequence (CDS)

ATGGAGATCGGCGCTCCAGAGTCCTCATGGATGGACCCGATTGCGGACTTCATTAGGGGCAATTCACCACAAGACCCCAAGGAGCGCAGAAAGTTAGCAAGGCGAGCAGCTCGGTTCGTGGTCCGAGGTGGAGCATTTTACCGACGCGGCTTTTCCCTGCCTCTATTGAGATGCCTAACCCCTGAAGAGGGTCTGGTACGAGGTGCGATGCCAAAACCTAAGGGTACGAGGTGCGATGCCAAAACCACTGATGAACTTAAAATTCAAACCTCCAAGGTAAAGGGACGATGTGAAAAGTTCAAAATGATCAAGCCTCTGAACCTGAGGAGTTGGTGCAATGCATTGAACACTAGACAGAGATACAAATTCAAAGATGTTGCCAACACCAAAGTAAAAACGAACAAAGCTTCTTCATTAAATGGAGAGCAGAGCCAAGGCTTATAG

Protein sequence

MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGGAFYRRGFSLPLLRCLTPEEGLVRGAMPKPKGTRCDAKTTDELKIQTSKVKGRCEKFKMIKPLNLRSWCNALNTRQRYKFKDVANTKVKTNKASSLNGEQSQGL

Homology

[Close]

BLAST of Moc06g11350 vs. NCBI nr
Match: XP_022143486.1 (uncharacterized protein LOC111013362 [Momordica charantia])

HSP 1 Score: 131.7 bits (330), Expect = 5.1e-27
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGGAFYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVR GA YRRGFSLPLLRCLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 309

Query: 61  PEEGL 66
           PEEGL
Sbjct: 310 PEEGL 314

[Close]

BLAST of Moc06g11350 vs. NCBI nr
Match: XP_022136647.1 (uncharacterized protein LOC111008302 [Momordica charantia])

HSP 1 Score: 131.3 bits (329), Expect = 6.6e-27
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGGAFYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRG A YRRGFSLPLLRCLT
Sbjct: 292 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGEALYRRGFSLPLLRCLT 351

Query: 61  PEEGL 66
           PEEGL
Sbjct: 352 PEEGL 356

[Close]

BLAST of Moc06g11350 vs. NCBI nr
Match: XP_022142324.1 (uncharacterized protein LOC111012466 [Momordica charantia])

HSP 1 Score: 129.0 bits (323), Expect = 3.3e-26
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGGAFYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPIADFIRGNSPQDP E RKLARRAARFVVRGGA YRRGFSLPLLRCLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPNEHRKLARRAARFVVRGGALYRRGFSLPLLRCLT 309

Query: 61  PEEGL 66
           P+EGL
Sbjct: 310 PKEGL 314

[Close]

BLAST of Moc06g11350 vs. NCBI nr
Match: XP_022158219.1 (protein NYNRIN-like [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-25
Identity = 61/65 (93.85%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGGAFYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPIADFIRGNSPQDPKERRKLA R ARFVVR GA YRRGFSLPLLRCLT
Sbjct: 196 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLAWRVARFVVRDGALYRRGFSLPLLRCLT 255

Query: 61  PEEGL 66
           PEEGL
Sbjct: 256 PEEGL 260

[Close]

BLAST of Moc06g11350 vs. NCBI nr
Match: XP_022158520.1 (uncharacterized protein LOC111024991 [Momordica charantia])

HSP 1 Score: 125.9 bits (315), Expect = 2.8e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGGAFYRRGFSLPLLRCLT 60
           MEIGAPESSWM+PI DFI+GNSPQDPKERRKLARRAARFV+R GA YRRGFSLPLL+CLT
Sbjct: 240 MEIGAPESSWMEPITDFIKGNSPQDPKERRKLARRAARFVIRDGALYRRGFSLPLLKCLT 299

Query: 61  PEEGL 66
           PEEGL
Sbjct: 300 PEEGL 304

[Close]

BLAST of Moc06g11350 vs. ExPASy TrEMBL
Match: A0A6J1CQD7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013362 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.5e-27
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGGAFYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVR GA YRRGFSLPLLRCLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 309

Query: 61  PEEGL 66
           PEEGL
Sbjct: 310 PEEGL 314

[Close]

BLAST of Moc06g11350 vs. ExPASy TrEMBL
Match: A0A6J1C617 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.2e-27
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGGAFYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRG A YRRGFSLPLLRCLT
Sbjct: 292 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGEALYRRGFSLPLLRCLT 351

Query: 61  PEEGL 66
           PEEGL
Sbjct: 352 PEEGL 356

[Close]

BLAST of Moc06g11350 vs. ExPASy TrEMBL
Match: A0A6J1CL97 (uncharacterized protein LOC111012466 OS=Momordica charantia OX=3673 GN=LOC111012466 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.6e-26
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGGAFYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPIADFIRGNSPQDP E RKLARRAARFVVRGGA YRRGFSLPLLRCLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPNEHRKLARRAARFVVRGGALYRRGFSLPLLRCLT 309

Query: 61  PEEGL 66
           P+EGL
Sbjct: 310 PKEGL 314

[Close]

BLAST of Moc06g11350 vs. ExPASy TrEMBL
Match: A0A6J1DYS0 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024755 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 6.1e-26
Identity = 61/65 (93.85%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGGAFYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPIADFIRGNSPQDPKERRKLA R ARFVVR GA YRRGFSLPLLRCLT
Sbjct: 196 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLAWRVARFVVRDGALYRRGFSLPLLRCLT 255

Query: 61  PEEGL 66
           PEEGL
Sbjct: 256 PEEGL 260

[Close]

BLAST of Moc06g11350 vs. ExPASy TrEMBL
Match: A0A6J1DW30 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024991 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.4e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGGAFYRRGFSLPLLRCLT 60
           MEIGAPESSWM+PI DFI+GNSPQDPKERRKLARRAARFV+R GA YRRGFSLPLL+CLT
Sbjct: 240 MEIGAPESSWMEPITDFIKGNSPQDPKERRKLARRAARFVIRDGALYRRGFSLPLLKCLT 299

Query: 61  PEEGL 66
           PEEGL
Sbjct: 300 PEEGL 304

The following BLAST results are available for this feature:

BLAST of Moc06g11350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143486.1	5.1e-27	96.92	uncharacterized protein LOC111013362 [Momordica charantia]	[more]
XP_022136647.1	6.6e-27	96.92	uncharacterized protein LOC111008302 [Momordica charantia]	[more]
XP_022142324.1	3.3e-26	93.85	uncharacterized protein LOC111012466 [Momordica charantia]	[more]
XP_022158219.1	1.3e-25	93.85	protein NYNRIN-like [Momordica charantia]	[more]
XP_022158520.1	2.8e-25	89.23	uncharacterized protein LOC111024991 [Momordica charantia]	[more]

BLAST of Moc06g11350 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g11350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQD7	2.5e-27	96.92	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013362 PE=4 SV=1	[more]
A0A6J1C617	3.2e-27	96.92	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1	[more]
A0A6J1CL97	1.6e-26	93.85	uncharacterized protein LOC111012466 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6J1DYS0	6.1e-26	93.85	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024755 PE=4 SV=1	[more]
A0A6J1DW30	1.4e-25	89.23	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024991 PE=4 SV=1	[more]

BLAST of Moc06g11350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g11350.1	Moc06g11350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity