Moc06g11050 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g11050
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr6: 8395951 .. 8397920 (-)
RNA-Seq Expression	Moc06g11050
Synteny	Moc06g11050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGACTTGAAGGTCTTGCCTAATGGCCGACCTGAGGCCTTCCTAAAGGCCGATCTGAAGGTCTTTCCTGAAAATCATTCAAGGGAGGAACGACCTTCCATACTTAGTCAAATTCCAGATGATAGAGTATGAACTGGAATAGCTACTCCCGACAGGCCAACCTTAGTCCTGACATGCTCAACCGCTGTTCGGATTCCTTGTCAGGTACTTCAGCCGATAAATAGGGCACTTCACTCTTCAGTCAGGTATGGTATTCTAGCTCGGCCTTCATACTAAGATCGAACTCAAAACTGACTTGAGCGTCGGAGTGTTTGTTCCCTTGTGTAGGTCTTACCTCGCCAAGTGGTATTTCAGCTCATTCTTGACACTTTAGCTCATCCCAGTCAGCCGACCTTGACCCTTTGAGCTGGTCATCCCTTTCCAAGAATATCCAAGCTCTTCATGCGGTCATACCTGGAGCAGGTCATGCTCTTCCCGCGGTCATACCTGAAAAGCAGGTCATGCTCTCTCGACGGTTATACCTGGAGTAGGTCGAGCTCTTCCCTATGGCCGACCTTGACCAGGTCATATCCCGTCACATTTTTTACATAAACATTTGGCACCATTTGTGGGGAAGGACATTTTAAGTCATTTCTACCAAACAAAGTTGTATGCACGAAACAATTCAATATCTGCATCTCAACTGGGATCTCCGAGATGTTCTCAAGGACCGAGCTAGGCGATCAACGTGTAAACGATGGTAGCTCAACATCGCCAAGAGGAAGAGTTTTACTCAACTCATTCCTGCCTAGAGGAAGAGCTCCATTTCAGCTCATCCCCGCCAAGAGGAAGAGCTTCATTTCAGCTCATTCCCGCCTAGAGGAAGAGCGCTTCATCTTAGCTCATCCCTGCAAGAGAAAGAGCTGCGATCATCATAACTCAACCTCGCCAAGAGGAAGAGCTTGATCTAAGCTCATTCCCGCCGAGAGGAAGAGCTACATCTCAGCTCATCCCGACAAGAGGAAGAGCTCTATCTCAGCTCATACCCAATTAGAGGAAGAGCTACCATCAGATAATTCAACCTCGCCAAGAGGAAGAGTTTTATCTCAGCTCATTCCTACCTAGAGGAAGAGCTTCATTTCAGCTCATCCTCGCCAAGTGGAAAAGCTTAATCTCAGCTCATCCTCGACAAGAGAAAGAGCGGCATCATCATAACTCAACCTCGCCAAGATGAAGATCTCGATCTCAACTCATTCCCACCTAGAGGAAAAGCTTCATCTTAGCTCATACTTCACCTAGAGGAAGAGATCCATTTTAGCTCATTCTTGCCTAGAGGAAGAGCTTCATCTCAGCTCATCCTCAACAAGAGAAGAGCTGTCATCATCATAACTCAACCTCGCCAAGAGGAAGAGCTCCATCTCAACTCATCCCGGTTAAAAGAAGAGCTACCATCAGATAGCTCAGCCTTGCCAAGAGAAATAGTTTCGTCTCAGCTCATCCCGGTTAGAAGAAGAGCTGCCATCAGATAACTCAACCTCGCCAAGAGGAAGAGTTTCATCTCAGCTCATCCCTGCCTTGTGGAAGAGCTTCATCTCAGCTCATCTCCGGCAAGAGAAAAAGCTGCTATCATCATAACTCAATCTTACCAAGAGGAAGAGTTTCATCTCAGCTCATCCCTACCTTGAGGAAGAGCTTCATCTCAGCTCATACTCGGTAAGAGAAAGAGCCACTATCATTATAACTCAATCTCGCCAAGAGGAAGAGTTTTCATCTCAGTTCATCCAGGTTAGAGGAAGAGTTGCTATCAGATAACTCAACCTCGCCAAGAGGAAGAGTTCCGTTTCAGCTCATCTCAGTTAGAGGAAGAGTTGCTATTAGATAACTCAACCTCGCCAAGAGGAAGAGTTTCATCTCAGCTCATCCCCGCCTTGTGGAAGAGCTTCATCTCAGCTCATCTCCGGCAAGAGAAAGAGCTGCTATCATCATAA

mRNA sequence

ATGGCCGACTTGAAGGTCTTGCCTAATGGCCGACCTGAGGCCTTCCTAAAGGCCGATCTGAAGGTCTTTCCTGAAAATCATTCAAGGGAGGAACGACCTTCCATACTTAGTCAAATTCCAGATGATAGAGTACTTCAGCCGATAAATAGGGCACTTCACTCTTCAGTCAGCTCATCCCAGTCAGCCGACCTTGACCCTTTGAGCTGGTCATCCCTTTCCAAGAATATCCAAGCTCTTCATGCGGTCATACCTGGAGCAGGTCATGCTCTTCCCGCGGTCATACCTGAAAAGCAGCTCATCCTCAACAAGAGAAGAGCTGTCATCATCATAACTCAACCTCGCCAAGAGGAAGAGCTCCATCTCAACTCATCCCGGTTAAAAGAAGAGCTACCATCAGATAGCTCAGCCTTGCCAAGAGAAATAGTTTCGTCTCAGCTCATCCCGATAACTCAACCTCGCCAAGAGGAAGAGTTCCGTTTCAGCTCATCTCAGTTAGAGGAAGAGTTGCTATTAGATAACTCAACCTCGCCAAGAGGAAGAGTTTCATCTCAGCTCATCCCCGCCTTGTGGAAGAGCTTCATCTCAGCTCATCTCCGGCAAGAGAAAGAGCTGCTATCATCATAA

Coding sequence (CDS)

ATGGCCGACTTGAAGGTCTTGCCTAATGGCCGACCTGAGGCCTTCCTAAAGGCCGATCTGAAGGTCTTTCCTGAAAATCATTCAAGGGAGGAACGACCTTCCATACTTAGTCAAATTCCAGATGATAGAGTACTTCAGCCGATAAATAGGGCACTTCACTCTTCAGTCAGCTCATCCCAGTCAGCCGACCTTGACCCTTTGAGCTGGTCATCCCTTTCCAAGAATATCCAAGCTCTTCATGCGGTCATACCTGGAGCAGGTCATGCTCTTCCCGCGGTCATACCTGAAAAGCAGCTCATCCTCAACAAGAGAAGAGCTGTCATCATCATAACTCAACCTCGCCAAGAGGAAGAGCTCCATCTCAACTCATCCCGGTTAAAAGAAGAGCTACCATCAGATAGCTCAGCCTTGCCAAGAGAAATAGTTTCGTCTCAGCTCATCCCGATAACTCAACCTCGCCAAGAGGAAGAGTTCCGTTTCAGCTCATCTCAGTTAGAGGAAGAGTTGCTATTAGATAACTCAACCTCGCCAAGAGGAAGAGTTTCATCTCAGCTCATCCCCGCCTTGTGGAAGAGCTTCATCTCAGCTCATCTCCGGCAAGAGAAAGAGCTGCTATCATCATAA

Protein sequence

MADLKVLPNGRPEAFLKADLKVFPENHSREERPSILSQIPDDRVLQPINRALHSSVSSSQSADLDPLSWSSLSKNIQALHAVIPGAGHALPAVIPEKQLILNKRRAVIIITQPRQEEELHLNSSRLKEELPSDSSALPREIVSSQLIPITQPRQEEEFRFSSSQLEEELLLDNSTSPRGRVSSQLIPALWKSFISAHLRQEKELLSS

Homology

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BLAST of Moc06g11050 vs. ExPASy TrEMBL
Match: A0A6J1CNY7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.2e-04
Identity = 36/66 (54.55%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 1  MADLKVLPNGRPEAFLKADLKVFPENHSREERPSILSQIPDDRVLQPINRALHSSVSSSQ 60
          MADL      RP   LKADLKVFPE+HS EERPSILSQ+PDD+ +        +  S S+
Sbjct: 1  MADL------RPS--LKADLKVFPEDHSWEERPSILSQVPDDKSM--------NWNSYSR 50

Query: 61 SADLDP 67
           ADL P
Sbjct: 61 QADLGP 50

The following BLAST results are available for this feature:

BLAST of Moc06g11050 vs.


Match Name	E-value	Identity	Description

BLAST of Moc06g11050 vs.


Match Name	E-value	Identity	Description

BLAST of Moc06g11050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNY7	9.2e-04	54.55	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1	[more]

BLAST of Moc06g11050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g11050.1	Moc06g11050.1	mRNA