Moc06g10550 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g10550
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	DNA (Cytosine-5)-methyltransferase CMT3-like
Location	chr6: 7807767 .. 7808335 (-)
RNA-Seq Expression	Moc06g10550
Synteny	Moc06g10550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCACCCACCAGGTCAGGAGGCTCAGAGCAATGGCTTCTGGCCACTGTTGCCCTCATAACATTTGGGTTCTTGGCCTATGCCATTTACGACGCTGCCGTCGCCTCGGTGGCCGAGTTGTTTCAGAGGATCGTCGTGGTTTCGCCACTGCTTTTGGTGGTTGCCGTTCACTGGCTGTCCATCGGCGGTGGCAGCAGCGGCTGTGGCACTCAGGCGGCTGTGGGGTTTCCTTGGGGAGTTGGTTTGCTTCTGCTTCTCATTCTGTTTCCTTGGAGTGCTGCTCTTCTTCTGCTTCTTCTTTACTTCTTTTTCCTCACTAACTGATCAACTTCTTCGATTCCGTGTACATTTCTCGCGTCACGCGTCACCTTTCTCGTTCGGGTGATTTTGTATTGAACGTGGCTGCTACAATACAATGTGGTTGCTCTCTAATAATTGTTCTATATACCCCAAATAACCGTTGGATACAGATTTGGAATACCTCTTGTAATTTCCCTTTCAACGGTGTAAAACTACCTATTAGGGTGATTTCTGTGCTTAGAAATGAGGTGAAGTTTCTTGGGTAG

mRNA sequence

ATGGCTGCACCCACCAGGTCAGGAGGCTCAGAGCAATGGCTTCTGGCCACTGTTGCCCTCATAACATTTGGGTTCTTGGCCTATGCCATTTACGACGCTGCCGTCGCCTCGGTGGCCGAGTTGTTTCAGAGGATCGTCGTGGTTTCGCCACTGCTTTTGGTGGTTGCCGTTCACTGGCTGTCCATCGGCGGTGGCAGCAGCGGCTGTGGCACTCAGGCGGCTGTGGGGGTGATTTCTGTGCTTAGAAATGAGGTGAAGTTTCTTGGGTAG

Coding sequence (CDS)

ATGGCTGCACCCACCAGGTCAGGAGGCTCAGAGCAATGGCTTCTGGCCACTGTTGCCCTCATAACATTTGGGTTCTTGGCCTATGCCATTTACGACGCTGCCGTCGCCTCGGTGGCCGAGTTGTTTCAGAGGATCGTCGTGGTTTCGCCACTGCTTTTGGTGGTTGCCGTTCACTGGCTGTCCATCGGCGGTGGCAGCAGCGGCTGTGGCACTCAGGCGGCTGTGGGGGTGATTTCTGTGCTTAGAAATGAGGTGAAGTTTCTTGGGTAG

Protein sequence

MAAPTRSGGSEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGSSGCGTQAAVGVISVLRNEVKFLG

Homology

[Close]

BLAST of Moc06g10550 vs. NCBI nr
Match: XP_022157357.1 (uncharacterized protein LOC111024080 [Momordica charantia])

HSP 1 Score: 143.7 bits (361), Expect = 7.8e-31
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MAAPTRSGGSEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWL 60
          MAAPTRSGGSEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWL
Sbjct: 1  MAAPTRSGGSEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWL 60

Query: 61 SIGGGSSGCGTQAAVG 77
          SIGGGSSGCGTQAAVG
Sbjct: 61 SIGGGSSGCGTQAAVG 76

[Close]

BLAST of Moc06g10550 vs. NCBI nr
Match: KAG6588160.1 (hypothetical protein SDJN03_16725, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022053.1 hypothetical protein SDJN02_15782, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.0 bits (232), Expect = 7.1e-16
Identity = 55/84 (65.48%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 1  MAAPTRSGG-SEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHW 60
          MAA TRS   S+QWLLAT+ALI  GFLAYAIYDAA+AS +E+ QR+V+VSPLLLVV VHW
Sbjct: 1  MAAYTRSTTFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHW 60

Query: 61 LSIGGGSSGCG-------TQAAVG 77
          LS+GGG  G G        Q AVG
Sbjct: 61 LSLGGGGGGGGGNSYYSHNQTAVG 84

[Close]

BLAST of Moc06g10550 vs. NCBI nr
Match: KAE8653489.1 (hypothetical protein Csa_006929, partial [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 2.7e-15
Identity = 48/67 (71.64%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 10 SEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGSSGC 69
          S+QWLLAT+ALI FGFLAYA+YDAAVAS +E+FQR+VVVSPLLLVVAVHWLS+G      
Sbjct: 13 SDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLGRDGGYN 72

Query: 70 GTQAAVG 77
             +AVG
Sbjct: 73 NNHSAVG 79

[Close]

BLAST of Moc06g10550 vs. NCBI nr
Match: XP_011660097.1 (uncharacterized protein LOC105436341 [Cucumis sativus] >KAA0042234.1 DNA (cytosine-5)-methyltransferase CMT3-like [Cucumis melo var. makuwa] >TYK14254.1 DNA (cytosine-5)-methyltransferase CMT3-like [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 2.7e-15
Identity = 48/67 (71.64%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 10 SEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGSSGC 69
          S+QWLLAT+ALI FGFLAYA+YDAAVAS +E+FQR+VVVSPLLLVVAVHWLS+G      
Sbjct: 13 SDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLGRDGGYN 72

Query: 70 GTQAAVG 77
             +AVG
Sbjct: 73 NNHSAVG 79

[Close]

BLAST of Moc06g10550 vs. NCBI nr
Match: OMO73116.1 (hypothetical protein CCACVL1_17460 [Corchorus capsularis])

HSP 1 Score: 71.6 bits (174), Expect = 3.8e-09
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 4  PTRS-----GGSEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVH 63
          PTRS       SEQWLL T +++  GFL Y +YDA +A+ AEL QR++++SPLLLVV VH
Sbjct: 5  PTRSRTSPFTPSEQWLLLTASVLVCGFLGYVVYDAIMATAAELLQRLLIISPLLLVVVVH 64

[Close]

BLAST of Moc06g10550 vs. ExPASy TrEMBL
Match: A0A6J1DUA1 (uncharacterized protein LOC111024080 OS=Momordica charantia OX=3673 GN=LOC111024080 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.8e-31
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MAAPTRSGGSEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWL 60
          MAAPTRSGGSEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWL
Sbjct: 1  MAAPTRSGGSEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWL 60

Query: 61 SIGGGSSGCGTQAAVG 77
          SIGGGSSGCGTQAAVG
Sbjct: 61 SIGGGSSGCGTQAAVG 76

[Close]

BLAST of Moc06g10550 vs. ExPASy TrEMBL
Match: A0A5A7TFN5 (DNA (Cytosine-5)-methyltransferase CMT3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1121G00430 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.3e-15
Identity = 48/67 (71.64%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 10 SEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGSSGC 69
          S+QWLLAT+ALI FGFLAYA+YDAAVAS +E+FQR+VVVSPLLLVVAVHWLS+G      
Sbjct: 13 SDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLGRDGGYN 72

Query: 70 GTQAAVG 77
             +AVG
Sbjct: 73 NNHSAVG 79

[Close]

BLAST of Moc06g10550 vs. ExPASy TrEMBL
Match: A0A0A0M2K2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G604070 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.3e-15
Identity = 48/67 (71.64%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 10 SEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGSSGC 69
          S+QWLLAT+ALI FGFLAYA+YDAAVAS +E+FQR+VVVSPLLLVVAVHWLS+G      
Sbjct: 13 SDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLGRDGGYN 72

Query: 70 GTQAAVG 77
             +AVG
Sbjct: 73 NNHSAVG 79

[Close]

BLAST of Moc06g10550 vs. ExPASy TrEMBL
Match: A0A1R3HRX6 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_17460 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.8e-09
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 4  PTRS-----GGSEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVH 63
          PTRS       SEQWLL T +++  GFL Y +YDA +A+ AEL QR++++SPLLLVV VH
Sbjct: 5  PTRSRTSPFTPSEQWLLLTASVLVCGFLGYVVYDAIMATAAELLQRLLIISPLLLVVVVH 64

[Close]

BLAST of Moc06g10550 vs. ExPASy TrEMBL
Match: A0A1R3K8K8 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_10451 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.8e-09
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 4  PTRS-----GGSEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVH 63
          PTRS       SEQWLL T +++  GFL Y +YDA +A+ AEL QR++++SPLLLVV VH
Sbjct: 5  PTRSRTSTFTPSEQWLLLTASVLVCGFLGYVVYDAIMATAAELLQRLLIISPLLLVVVVH 64

The following BLAST results are available for this feature:

BLAST of Moc06g10550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157357.1	7.8e-31	100.00	uncharacterized protein LOC111024080 [Momordica charantia]	[more]
KAG6588160.1	7.1e-16	65.48	hypothetical protein SDJN03_16725, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8653489.1	2.7e-15	71.64	hypothetical protein Csa_006929, partial [Cucumis sativus]	[more]
XP_011660097.1	2.7e-15	71.64	uncharacterized protein LOC105436341 [Cucumis sativus] >KAA0042234.1 DNA (cytosi...	[more]
OMO73116.1	3.8e-09	56.92	hypothetical protein CCACVL1_17460 [Corchorus capsularis]	[more]

BLAST of Moc06g10550 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g10550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DUA1	3.8e-31	100.00	uncharacterized protein LOC111024080 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A5A7TFN5	1.3e-15	71.64	DNA (Cytosine-5)-methyltransferase CMT3-like OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A0A0M2K2	1.3e-15	71.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G604070 PE=4 SV=1	[more]
A0A1R3HRX6	1.8e-09	56.92	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_17460 PE=4 ...	[more]
A0A1R3K8K8	1.8e-09	56.92	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_10451 PE=4 SV=1	[more]

BLAST of Moc06g10550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306	EXPRESSED PROTEIN-RELATED-RELATED	coord: 9..67
None	No IPR available	PANTHER	PTHR33306:SF22	PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR-ASSOCIATED PROTEIN 1	coord: 9..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g10550.1	Moc06g10550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity