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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGAATCCATCGTCCTCCAAAATTGAACAGTCCGGGTGCTGCAAGCCGCCGGCGGCGTGCGGATACAGCTTCCTCAGCCCGACGGCGTGGGCCAACCCTGAAACCCGACGGCCGACCCGGATTGCTCCATCTGGAGCAACGACAGAACCCGCCTCTGCTACGACTGCGGCGGCTGCAAGGCCGGCCTCCTCGGAAACCTCCGTCAGGAGTGGCGGAAGGCCAACGCCATCCTCGTCGCCGCCGTCGTCGTTCTGGTTTTCGTTTATCTCCTCGCCTGCGCCGCCTATAAGAATGCCCAAATCCAGAATATCTCTACCCGGTATAAGCATGGCTGGATTTAACTTAACCCTGTATCCAAACACACCCCTTTTCCCTCTGCCTCTAATTTCCTAA mRNA sequence ATGAATCCATCGTCCTCCAAAATTGAACAGTCCGGGTGCTGCAAGCCGCCGGCGGCGTGCGGATACAGCTTCCTCAGCCCGACGGCGTGGGCCAACCCTGAAACCCGACGGCCGACCCGGATTGCTCCATCTGGAGCAACGACAGAACCCGCCTCTGCTACGACTGCGGCGGCTGCAAGGCCGGCCTCCTCGGAAACCTCCGTCAGGAGTGGCGGAAGGCCAACGCCATCCTCGTCGCCGCCGTCGTCGTTCTGGTTTTCGTTTATCTCCTCGCCTGCGCCGCCTATAAGAATGCCCAAATCCAGAATATCTCTACCCGGTATAAGCATGGCTGGATTTAACTTAACCCTGTATCCAAACACACCCCTTTTCCCTCTGCCTCTAATTTCCTAA Coding sequence (CDS) ATGAATCCATCGTCCTCCAAAATTGAACAGTCCGGGTGCTGCAAGCCGCCGGCGGCGTGCGGATACAGCTTCCTCAGCCCGACGGCGTGGGCCAACCCTGAAACCCGACGGCCGACCCGGATTGCTCCATCTGGAGCAACGACAGAACCCGCCTCTGCTACGACTGCGGCGGCTGCAAGGCCGGCCTCCTCGGAAACCTCCGTCAGGAGTGGCGGAAGGCCAACGCCATCCTCGTCGCCGCCGTCGTCGTTCTGGTTTTCGTTTATCTCCTCGCCTGCGCCGCCTATAAGAATGCCCAAATCCAGAATATCTCTACCCGGTATAAGCATGGCTGGATTTAACTTAACCCTGTATCCAAACACACCCCTTTTCCCTCTGCCTCTAATTTCCTAA Protein sequence MNPSSSKIEQSGCCKPPAACGYSFLSPTAWANPETRRPTRIAPSGATTEPASATTAAAARPASSETSVRSGGRPTPSSSPPSSFWFSFISSPAPPIRMPKSRISLPGISMAGFNLTLYPNTPLFPLPLIS
Homology
BLAST of Moc06g08780 vs. ExPASy Swiss-Prot
Match: Q9ZUN5 (Tetraspanin-2 OS=Arabidopsis thaliana OX=3702 GN=TET2 PE=2 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 4.5e-06 Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 0
Query: 4 SSSKIE--QSGCCKPPAACGYSFLSPTAWANP 34
SSSKI QSGCCKPP ACGY+F++PT W NP
Sbjct: 159 SSSKITPLQSGCCKPPTACGYNFVNPTLWLNP 190
BLAST of Moc06g08780 vs. TAIR 10
Match: AT2G19580.1 (tetraspanin2 ) HSP 1 Score: 52.4 bits (124), Expect = 3.2e-07 Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 0
Query: 4 SSSKIE--QSGCCKPPAACGYSFLSPTAWANP 34
SSSKI QSGCCKPP ACGY+F++PT W NP
Sbjct: 159 SSSKITPLQSGCCKPPTACGYNFVNPTLWLNP 190
BLAST of Moc06g08780 vs. TAIR 10
Match: AT5G46700.1 (Tetraspanin family protein ) HSP 1 Score: 43.9 bits (102), Expect = 1.1e-04 Identity = 15/24 (62.50%), Postives = 20/24 (83.33%), Query Frame = 0
Query: 10 QSGCCKPPAACGYSFLSPTAWANP 34
QSGCCKPP CG++F++PT W +P
Sbjct: 166 QSGCCKPPTKCGFTFVNPTYWISP 189
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
|---|
| Q9ZUN5 | 4.5e-06 | 71.88 | Tetraspanin-2 OS=Arabidopsis thaliana OX=3702 GN=TET2 PE=2 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 26..83 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 41..83 |
Relationships
The following mRNA feature(s) are a part of this gene:
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