Moc06g06580 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g06580
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Location	chr6: 4807160 .. 4808042 (-)
RNA-Seq Expression	Moc06g06580
Synteny	Moc06g06580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCACGTTGAATCGGATTTTCCGGAATCATGTTTTTGCACTAGTCTCTCGCCTCGGCTTCGGAGCAACAGCTTTCGCCGGAGTCTCAGCTACCAGAGGCTTCCGCCGCAGCTCCTCCGGCTTTCGGTGCTGAAACTGGACGGCTCTTCCTTCGGTAATGCATTATCCCCCTGCATACTGATTCTTTTATTTTCGCTCTTTATTGCAAATCTTGCTCTGTGGATGAGCATTTCTGTGGATAATCTAGGTATTGAGGAATGTTTTATGTTGATTTGGGGATTCTGTTTCCATAAATGTTGACGCTGCTGTGAAACGTTTGGATATTCTGCCCTGCCCTGGGACTGTGTATTGAATCAATTATCAATGATTTTTGAAAAATTTAGGTTGTTGAATTATGGTCGGTTTGTTTATGTATTCGAATTTTGAATAATATATGTGCGTAGAGGTGCAAGTTGCAAGGAAAGCGACGGTGGCAGATCTCAGAGACGCGGTGGAGAGTGTTTTCTGTCAAATTATGATGAATAAAGAAGATACCAAGATTTCATGGTAGGCTGTTGGAACTGCTGAGACCGCATACATTAATTTAATCTGTTGATTGAGAAATGTGTTCAATTATTGTTTTTATTTGGTGCAAATGCAGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAACTGATCAACGATAAATCACATATTAAACATTTCGGAATCAGGGATGGTGAACAGGTACACCTCGTGAATATTGGTTTAATTTATAGTTCTCTCTCTGTTGTCTATGACGTTGAGTCTGGTCTTGTATTTGCTCAAGTCATTAACCAATTATATGTATCCCCATGCAGCTGCATTTTGTGAACCGTGTAGCTTAA

mRNA sequence

ATGTCTCACGTTGAATCGGATTTTCCGGAATCATGTTTTTGCACTAGTCTCTCGCCTCGGCTTCGGAGCAACAGCTTTCGCCGGAGTCTCAGCTACCAGAGGCTTCCGCCGCAGCTCCTCCGGCTTTCGGTGCTGAAACTGGACGGCTCTTCCTTCGAGGTGCAAGTTGCAAGGAAAGCGACGGTGGCAGATCTCAGAGACGCGGTGGAGAGTGTTTTCTGTCAAATTATGATGAATAAAGAAGATACCAAGATTTCATGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAACTGATCAACGATAAATCACATATTAAACATTTCGGAATCAGGGATGGTGAACAGCTGCATTTTGTGAACCGTGTAGCTTAA

Coding sequence (CDS)

ATGTCTCACGTTGAATCGGATTTTCCGGAATCATGTTTTTGCACTAGTCTCTCGCCTCGGCTTCGGAGCAACAGCTTTCGCCGGAGTCTCAGCTACCAGAGGCTTCCGCCGCAGCTCCTCCGGCTTTCGGTGCTGAAACTGGACGGCTCTTCCTTCGAGGTGCAAGTTGCAAGGAAAGCGACGGTGGCAGATCTCAGAGACGCGGTGGAGAGTGTTTTCTGTCAAATTATGATGAATAAAGAAGATACCAAGATTTCATGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAACTGATCAACGATAAATCACATATTAAACATTTCGGAATCAGGGATGGTGAACAGCTGCATTTTGTGAACCGTGTAGCTTAA

Protein sequence

MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQLHFVNRVA

Homology

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BLAST of Moc06g06580 vs. NCBI nr
Match: XP_022144848.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Momordica charantia] >XP_022144849.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Momordica charantia])

HSP 1 Score: 267.7 bits (683), Expect = 5.2e-68
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60
           MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA
Sbjct: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60

Query: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120
           TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ
Sbjct: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120

Query: 121 LHFVNRVA 129
           LHFVNRVA
Sbjct: 121 LHFVNRVA 128

[Close]

BLAST of Moc06g06580 vs. NCBI nr
Match: XP_011655436.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >KGN65130.1 hypothetical protein Csa_023500 [Cucumis sativus])

HSP 1 Score: 201.1 bits (510), Expect = 5.9e-48
Identity = 96/124 (77.42%), Postives = 106/124 (85.48%), Query Frame = 0


Query: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60
           MSH+E   P+SC    +SPR  SNSFRRSL Y RLPPQLLRLSVLKLDGSSFEVQV R A
Sbjct: 1   MSHIEPIVPDSC---CISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA 60

Query: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120
           TVA +RDAVESVFC++ MNKED  ISWPHVWGHFCLCYKHFKL++DKS I+HFGIRDG+Q
Sbjct: 61  TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ 120

Query: 121 LHFV 125
           LHFV
Sbjct: 121 LHFV 121

[Close]

BLAST of Moc06g06580 vs. NCBI nr
Match: XP_023531556.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.1 bits (505), Expect = 2.3e-47
Identity = 96/128 (75.00%), Postives = 109/128 (85.16%), Query Frame = 0


Query: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60
           MS +E + P+SC    +SPR RSNSFRRSL YQRLP +LL LSVLKLDGSSFEVQVARKA
Sbjct: 21  MSRIEPNIPDSC---CISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKA 80

Query: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120
           +VA LR+AVESVFC + MN+ED KISWPHVW HFCLCYKH+KLI++KS IK FGIRDG+ 
Sbjct: 81  SVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDL 140

Query: 121 LHFVNRVA 129
           LHFVNRVA
Sbjct: 141 LHFVNRVA 145

[Close]

BLAST of Moc06g06580 vs. NCBI nr
Match: XP_023531557.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.1 bits (505), Expect = 2.3e-47
Identity = 96/128 (75.00%), Postives = 109/128 (85.16%), Query Frame = 0


Query: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60
           MS +E + P+SC    +SPR RSNSFRRSL YQRLP +LL LSVLKLDGSSFEVQVARKA
Sbjct: 1   MSRIEPNIPDSC---CISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKA 60

Query: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120
           +VA LR+AVESVFC + MN+ED KISWPHVW HFCLCYKH+KLI++KS IK FGIRDG+ 
Sbjct: 61  SVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDL 120

Query: 121 LHFVNRVA 129
           LHFVNRVA
Sbjct: 121 LHFVNRVA 125

[Close]

BLAST of Moc06g06580 vs. NCBI nr
Match: XP_022973901.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita maxima])

HSP 1 Score: 198.0 bits (502), Expect = 5.0e-47
Identity = 94/128 (73.44%), Postives = 109/128 (85.16%), Query Frame = 0


Query: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60
           M  +E + P+SC    +SPR RSNSFRRSL YQRLP +LL LSVLKLDGSSFEVQVARKA
Sbjct: 1   MPRIEPNIPDSC---CISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKA 60

Query: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120
           +VA LR+AVESVFC ++MN+ED KISWPHVW HFCLCYKH+KLI++KS IK FGIRDG+ 
Sbjct: 61  SVAKLREAVESVFCGMLMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDL 120

Query: 121 LHFVNRVA 129
           LHFVNR+A
Sbjct: 121 LHFVNRIA 125

[Close]

BLAST of Moc06g06580 vs. ExPASy Swiss-Prot
Match: Q84WS8 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-10
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 40  LRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQI-MMNKEDTKISWPHVWGHFCLCY 99
           +RLSV+KLDGSS +V V   AT+ DL+  ++    ++   N     ISW HVW +FCL  
Sbjct: 52  MRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSC 111

Query: 100 KHFKLINDKSHIKHFGIRDGEQLHFV 125
            + KL++D + ++  GIR+  Q+ F+
Sbjct: 112 NNEKLLDDNAVLQDVGIRNNSQVTFM 137

[Close]

BLAST of Moc06g06580 vs. ExPASy Swiss-Prot
Match: Q3ZBQ4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-06
Identity = 28/92 (30.43%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 38  QLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKED--TKISWPHVWGHFC 97
           Q + + V K+DG    V V + ATV DL+ A++  + Q+   +E     ISW +VW  + 
Sbjct: 30  QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQR-YVQLRQEREGGIQHISWSYVWRTYH 89

Query: 98  LCYKHFKLINDKSHIKHFGIRDGEQLHFVNRV 128
           L     KL  D+  ++ +GIR+ +++ F+ ++
Sbjct: 90  LTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKL 120

[Close]

BLAST of Moc06g06580 vs. ExPASy Swiss-Prot
Match: Q9BV90 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-06
Identity = 28/92 (30.43%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 38  QLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKED--TKISWPHVWGHFC 97
           Q + + V K+DG    V V + ATV DL+ A++  + Q+   +E     ISW +VW  + 
Sbjct: 39  QAMTVRVCKMDGEVMPVVVVQSATVLDLKKAIQR-YVQLKQEREGGIQHISWSYVWRTYH 98

Query: 98  LCYKHFKLINDKSHIKHFGIRDGEQLHFVNRV 128
           L     KL  D+  ++ +GIR+ +++ F+ ++
Sbjct: 99  LTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKL 129

[Close]

BLAST of Moc06g06580 vs. ExPASy Swiss-Prot
Match: Q8VIK1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-06
Identity = 28/92 (30.43%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 38  QLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKED--TKISWPHVWGHFC 97
           Q + + V K+DG    V V + ATV DL+ A++  + Q+   +E     ISW +VW  + 
Sbjct: 30  QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQR-YVQLKQEREGGVQHISWSYVWRTYH 89

Query: 98  LCYKHFKLINDKSHIKHFGIRDGEQLHFVNRV 128
           L     KL  D+  ++ +GIR+ +++ F+ ++
Sbjct: 90  LTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKL 120

[Close]

BLAST of Moc06g06580 vs. ExPASy TrEMBL
Match: A0A6J1CUD1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Momordica charantia OX=3673 GN=LOC111014434 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.5e-68
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60
           MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA
Sbjct: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60

Query: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120
           TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ
Sbjct: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120

Query: 121 LHFVNRVA 129
           LHFVNRVA
Sbjct: 121 LHFVNRVA 128

[Close]

BLAST of Moc06g06580 vs. ExPASy TrEMBL
Match: A0A0A0LT94 (Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.9e-48
Identity = 96/124 (77.42%), Postives = 106/124 (85.48%), Query Frame = 0


Query: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60
           MSH+E   P+SC    +SPR  SNSFRRSL Y RLPPQLLRLSVLKLDGSSFEVQV R A
Sbjct: 1   MSHIEPIVPDSC---CISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA 60

Query: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120
           TVA +RDAVESVFC++ MNKED  ISWPHVWGHFCLCYKHFKL++DKS I+HFGIRDG+Q
Sbjct: 61  TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ 120

Query: 121 LHFV 125
           LHFV
Sbjct: 121 LHFV 121

[Close]

BLAST of Moc06g06580 vs. ExPASy TrEMBL
Match: A0A6J1I9W9 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita maxima OX=3661 GN=LOC111472494 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.4e-47
Identity = 94/128 (73.44%), Postives = 109/128 (85.16%), Query Frame = 0


Query: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60
           M  +E + P+SC    +SPR RSNSFRRSL YQRLP +LL LSVLKLDGSSFEVQVARKA
Sbjct: 1   MPRIEPNIPDSC---CISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKA 60

Query: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120
           +VA LR+AVESVFC ++MN+ED KISWPHVW HFCLCYKH+KLI++KS IK FGIRDG+ 
Sbjct: 61  SVAKLREAVESVFCGMLMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDL 120

Query: 121 LHFVNRVA 129
           LHFVNR+A
Sbjct: 121 LHFVNRIA 125

[Close]

BLAST of Moc06g06580 vs. ExPASy TrEMBL
Match: A0A6J1EHC7 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschata OX=3662 GN=LOC111434307 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 4.2e-47
Identity = 95/128 (74.22%), Postives = 108/128 (84.38%), Query Frame = 0


Query: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60
           M  +E + P+SC    +SPR RSNSFRRSL YQRLP +LL LSVLKLDGSSFEVQVARKA
Sbjct: 1   MPRIEPNIPDSC---CISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKA 60

Query: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120
           +VA LR+AVESVFC + MN+ED KISWPHVW HFCLCYKH+KLI++KS IK FGIRDG+ 
Sbjct: 61  SVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDL 120

Query: 121 LHFVNRVA 129
           LHFVNRVA
Sbjct: 121 LHFVNRVA 125

[Close]

BLAST of Moc06g06580 vs. ExPASy TrEMBL
Match: A0A5A7U4H4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00840 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 5.4e-47
Identity = 94/124 (75.81%), Postives = 105/124 (84.68%), Query Frame = 0


Query: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60
           MS +E   P+SC    +SPR  +NSFRRSL Y RLPPQLLRLSVLKLDGSSFEVQV R A
Sbjct: 4   MSQIEPIVPDSC---CISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA 63

Query: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120
           TVA +RDAVESVFC++ MNKED  ISWPHVWGHFCLCYKHFKL++DKS I+HFGIRDG+Q
Sbjct: 64  TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ 123

Query: 121 LHFV 125
           LHFV
Sbjct: 124 LHFV 124

[Close]

BLAST of Moc06g06580 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 7.5e-25
Identity = 53/102 (51.96%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 27  RRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKIS 86
           RR+ SY +LP + +RLSVLKLDGSSF+V V   ATV DL+ A+E+ F  +   K  +KIS
Sbjct: 6   RRTFSYDKLPNEPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHV-PKKGPSKIS 65

Query: 87  WPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQLHFVNRVA 129
           W HVWGHFCLC+   KLI D   I ++G++DG+++ F N V+
Sbjct: 66  WSHVWGHFCLCFGGQKLITDTDCIGNYGMKDGDEVRFKNHVS 106

[Close]

BLAST of Moc06g06580 vs. TAIR 10
Match: AT4G32270.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 110.5 bits (275), Expect = 9.8e-25
Identity = 54/122 (44.26%), Postives = 80/122 (65.57%), Query Frame = 0


Query: 9   PESCFCTSLSPRLRSNSF--RRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLR 68
           P      SLSP    +    RRS +Y ++P + ++L+VLKLDGSSF +QV + ATV +L+
Sbjct: 5   PRRSLAASLSPLRLIDGLPRRRSFNYNQMPEEPIKLTVLKLDGSSFGIQVLKTATVGELK 64

Query: 69  DAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQLHFVNR 128
            AVE+ F  + ++    KISWPHVWG FCL Y+  +LIN+  ++  FGI+DG+QL F+  
Sbjct: 65  MAVEAAFSHLPISGPG-KISWPHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQLRFIRH 124

[Close]

BLAST of Moc06g06580 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-24
Identity = 57/107 (53.27%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 23  SNSFRRSLSYQRLPPQ-LLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKE 82
           S S RRS SY +LPPQ  ++LSV+KL+GS F+V+VA+  +VA+L+ AVE VF  I   + 
Sbjct: 36  SISGRRS-SYLKLPPQGRIKLSVVKLNGSLFDVEVAKDCSVAELKRAVEQVF-TISPLEG 95

Query: 83  DTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQLHFVNRVA 129
              ISW HVWGHFCLCY+  +L+NDK+ I++ G+ DG+QLHFV  ++
Sbjct: 96  HGMISWSHVWGHFCLCYRDQRLVNDKTSIRYLGLNDGDQLHFVRHLS 140

[Close]

BLAST of Moc06g06580 vs. TAIR 10
Match: AT4G32270.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-19
Identity = 44/94 (46.81%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 35  LPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHF 94
           +P + ++L+VLKLDGSSF   V + ATV +L+ AVE+ F  + ++    KISWPHVWG F
Sbjct: 1   MPEEPIKLTVLKLDGSSF---VLKTATVGELKMAVEAAFSHLPISGPG-KISWPHVWGQF 60

Query: 95  CLCYKHFKLINDKSHIKHFGIRDGEQLHFVNRVA 129
           CL Y+  +LIN+  ++  FGI+DG+QL F+  ++
Sbjct: 61  CLSYEDKRLINESEYLTEFGIKDGDQLRFIRHIS 90

[Close]

BLAST of Moc06g06580 vs. TAIR 10
Match: AT3G07860.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 9.5e-12
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 40  LRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQI-MMNKEDTKISWPHVWGHFCLCY 99
           +RLSV+KLDGSS +V V   AT+ DL+  ++    ++   N     ISW HVW +FCL  
Sbjct: 52  MRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSC 111

Query: 100 KHFKLINDKSHIKHFGIRDGEQLHFV 125
            + KL++D + ++  GIR+  Q+ F+
Sbjct: 112 NNEKLLDDNAVLQDVGIRNNSQVTFM 137

The following BLAST results are available for this feature:

BLAST of Moc06g06580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144848.1	5.2e-68	100.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Momordica charantia...	[more]
XP_011655436.1	5.9e-48	77.42	U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >KGN651...	[more]
XP_023531556.1	2.3e-47	75.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbit...	[more]
XP_023531557.1	2.3e-47	75.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbit...	[more]
XP_022973901.1	5.0e-47	73.44	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita maxima]	[more]

BLAST of Moc06g06580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WS8	1.3e-10	39.53	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana O...	[more]
Q3ZBQ4	1.5e-06	30.43	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=...	[more]
Q9BV90	1.5e-06	30.43	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 G...	[more]
Q8VIK1	1.5e-06	30.43	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 ...	[more]

BLAST of Moc06g06580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CUD1	2.5e-68	100.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Momordica charant...	[more]
A0A0A0LT94	2.9e-48	77.42	Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020...	[more]
A0A6J1I9W9	2.4e-47	73.44	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita maxima ...	[more]
A0A6J1EHC7	4.2e-47	74.22	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschat...	[more]
A0A5A7U4H4	5.4e-47	75.81	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]

BLAST of Moc06g06580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25340.1	7.5e-25	51.96	Ubiquitin-like superfamily protein	[more]
AT4G32270.1	9.8e-25	44.26	Ubiquitin-like superfamily protein	[more]
AT1G80060.1	1.3e-24	53.27	Ubiquitin-like superfamily protein	[more]
AT4G32270.2	1.2e-19	46.81	Ubiquitin-like superfamily protein	[more]
AT3G07860.1	9.5e-12	39.53	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 40..127 e-value: 1.8E-26 score: 92.0
IPR040610	SNRNP25, ubiquitin-like domain	CDD	cd17058	Ubl_SNRNP25	coord: 40..126 e-value: 1.05016E-38 score: 123.782
None	No IPR available	GENE3D	3.10.20.90		coord: 36..128 e-value: 5.1E-33 score: 114.9
None	No IPR available	PANTHER	PTHR14942:SF2	UBIQUITIN-LIKE SUPERFAMILY PROTEIN	coord: 9..127
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 9..127
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 36..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g06580.1	Moc06g06580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex