Moc06g03920 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g03920
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionPentatricopeptide repeat-containing protein
Locationchr6: 2793353 .. 2794452 (-)
RNA-Seq ExpressionMoc06g03920
SyntenyMoc06g03920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCAGGGGCAGAGTGTGCATGAGGAATTTGCTTATGGGCAGATGATAGATTCACTTTGTAAAGCTAGAAGACATCATGGGGCCTCAAGAATTGCATATATAATGAGGAAGAGAGGGTTTAATCCTGGTTTACTCTCGCATAATTCTATTAGCAAGGAATTGAATTTGGGTACTCACCATCTGAACTTACAAATAAGGTTCTTGTAGAAGGTCTTTGCCTAGAGATAGACATCCAGGCAAAGGAAGTTTTTCAAATAATGATAGACAAGGAAGGTGTCGACAGAACTTGAATTTACAACATATACTTGAGAGCTATTTGCCTTGCAAATAAGTCAACCGAGCTCTTAAATACATTTGTTGTAATGCTTCAAACCAATTGTCAATCTGATGTTATTACCCTGAATACAGTTATCAAGGGATTTTGTCATATTGGAAGCATTGAAAAAGCTCTAAAGGTATTAAATGATATGATGATTTGTCAATTTTGTGCCCCTGATTATGTGAACTTCACGACTATTATATATGGGTTACTGAATGTTGGGAGGATCCAGGAATCTCTTGATATATTATATAAAGTAATGCGAGAAAAAGGCATTATGTTGCGTGTTGTTACATATAATGCTCTACTATTTGAGGTTTATTTAAATTTCATACCTTTTGACAGAATGGTTAGGAATGGTGCCTGGCAGACAGTACAACATATGCTGTGGTAATTGATGGGCTATGTGATTCCAATAAAATTGAAGAAGCTAAGAGATTCTGGAAAGATATAGTCTGGCCGTCAAAGATTCGTAATAGTTTTGTCTATTCTACTAAGGGCTTTGCAACAATGGAAAATTTAGTGAAGCTTGCGATTTCCTATATGAACTAGTAGACTCTGGGGCTACAATATTGTGATCAATACTGCGTGTAAGTTTGGACTAAAAGGAGAAGCATATCAACTAGTCACAGAGATGAGGAATAATGGGCTAGCCCCTGGTGCCATAACTTGGAGGATTCTTCACAAATTACATCAAAGTGAGACGATGAAATCACCTCCCAAGGATTTAACTAGTCAACCTAGAGATGGCCGTGACCTGACAGATTTGAAGGATTAA

mRNA sequence

ATGCCTCAGGGGCAGAGTGTGCATGAGGAATTTGCTTATGGGCAGATGATAGATTCACTTTGTAAAGCTAGAAGACATCATGGGGCCTCAAGAATTGCATATATAATGAGGAAGAGAGGGTTTAATCCTGGTTTACTCTCGCATAATTCTATTAGCAAGGAATTGAATTTGGGTACTCACCATCTGAACTTACAAATAAGACTCTGGGGCTACAATATTGTGATCAATACTGCGTGTAAGTTTGGACTAAAAGGAGAAGCATATCAACTAGTCACAGAGATGAGGAATAATGGGCTAGCCCCTGGTGCCATAACTTGGAGGATTCTTCACAAATTACATCAAAGTGAGACGATGAAATCACCTCCCAAGGATTTAACTAGTCAACCTAGAGATGGCCGTGACCTGACAGATTTGAAGGATTAA

Coding sequence (CDS)

ATGCCTCAGGGGCAGAGTGTGCATGAGGAATTTGCTTATGGGCAGATGATAGATTCACTTTGTAAAGCTAGAAGACATCATGGGGCCTCAAGAATTGCATATATAATGAGGAAGAGAGGGTTTAATCCTGGTTTACTCTCGCATAATTCTATTAGCAAGGAATTGAATTTGGGTACTCACCATCTGAACTTACAAATAAGACTCTGGGGCTACAATATTGTGATCAATACTGCGTGTAAGTTTGGACTAAAAGGAGAAGCATATCAACTAGTCACAGAGATGAGGAATAATGGGCTAGCCCCTGGTGCCATAACTTGGAGGATTCTTCACAAATTACATCAAAGTGAGACGATGAAATCACCTCCCAAGGATTTAACTAGTCAACCTAGAGATGGCCGTGACCTGACAGATTTGAAGGATTAA

Protein sequence

MPQGQSVHEEFAYGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSHNSISKELNLGTHHLNLQIRLWGYNIVINTACKFGLKGEAYQLVTEMRNNGLAPGAITWRILHKLHQSETMKSPPKDLTSQPRDGRDLTDLKD
Homology
[Close]
BLAST of Moc06g03920 vs. NCBI nr
Match: XP_022134613.1 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g18020 [Momordica charantia])

HSP 1 Score: 166.0 bits (419), Expect = 2.3e-37
Identity = 130/367 (35.42%), Postives = 133/367 (36.24%), Query Frame = 0 

Query: 1   MPQGQSVHEEFAYGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSHNSI--------- 60
           MPQGQSVHEEFAYGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSHNSI         
Sbjct: 291 MPQGQSVHEEFAYGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSHNSIXQGIEFGYS 350

Query: 61  --------------------SKE------------------------------------- 120
                               +KE                                     
Sbjct: 351 PSELTNKVLVEGLCLEIDIQAKEVFQIMIDKEGVDRTXIYNIYLRAICLANKSTELLNTF 410

Query: 121 ----------------------------------------------------------LN 141
                                                                     LN
Sbjct: 411 VVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLN 470

[Close]
BLAST of Moc06g03920 vs. NCBI nr
Match: XP_022132241.1 (pentatricopeptide repeat-containing protein At3g18020-like [Momordica charantia] >XP_022132242.1 pentatricopeptide repeat-containing protein At3g18020-like [Momordica charantia] >XP_022132243.1 pentatricopeptide repeat-containing protein At3g18020-like [Momordica charantia] >XP_022132244.1 pentatricopeptide repeat-containing protein At3g18020-like [Momordica charantia] >XP_022132246.1 pentatricopeptide repeat-containing protein At3g18020-like [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-25
Identity = 64/133 (48.12%), Postives = 79/133 (59.40%), Query Frame = 0 

Query: 7   VHEEFAYGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSHNSISKELNLGTHHLNLQI 66
           +H+ F Y  ++  LC + + + A    Y +   G +P +                     
Sbjct: 595 IHDSFVYSAILKGLCNSGKFNEACHFLYELADSGVSPNIFC------------------- 654

Query: 67  RLWGYNIVINTACKFGLKGEAYQLVTEMRNNGLAPGAITWRILHKLHQSETMKSPPKDLT 126
               YNIVINTACKFG KGEAYQLVTEMR NGLAP A+TWRILHKLHQSE ++S PKDL+
Sbjct: 655 ----YNIVINTACKFGFKGEAYQLVTEMRKNGLAPDAVTWRILHKLHQSEAVQSHPKDLS 704

Query: 127 SQPRDGRDLTDLK 140
           SQP  G DL DL+
Sbjct: 715 SQPSHGLDLIDLE 704

[Close]
BLAST of Moc06g03920 vs. NCBI nr
Match: XP_022921380.1 (pentatricopeptide repeat-containing protein At3g18020 [Cucurbita moschata])

HSP 1 Score: 125.2 bits (313), Expect = 4.5e-25
Identity = 63/134 (47.01%), Postives = 79/134 (58.96%), Query Frame = 0 

Query: 7   VHEEFAYGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSHNSISKELNLGTHHLNLQI 66
           +H+ F Y  ++  LC + + + A    Y +   G +P +                     
Sbjct: 589 IHDSFVYSAILKGLCLSSKFNEACHFLYELADSGVSPNIFC------------------- 648

Query: 67  RLWGYNIVINTACKFGLKGEAYQLVTEMRNNGLAPGAITWRILHKLHQSETMKSPPKDLT 126
               YNIVINTACK GLKGEAYQLVTEMR NGL P A+TWRILHKLHQ+E  +S PKDLT
Sbjct: 649 ----YNIVINTACKLGLKGEAYQLVTEMRKNGLTPDAVTWRILHKLHQNEMTQSRPKDLT 699

Query: 127 SQPRDGRDLTDLKD 141
           +QP DG D T+LK+
Sbjct: 709 NQPTDGLDQTELKN 699

[Close]
BLAST of Moc06g03920 vs. NCBI nr
Match: KAG7023322.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.2 bits (313), Expect = 4.5e-25
Identity = 63/134 (47.01%), Postives = 79/134 (58.96%), Query Frame = 0 

Query: 7   VHEEFAYGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSHNSISKELNLGTHHLNLQI 66
           +H+ F Y  ++  LC + + + A    Y +   G +P +                     
Sbjct: 589 IHDSFVYSAILKGLCLSSKFNEACHFLYELADSGVSPNIFC------------------- 648

Query: 67  RLWGYNIVINTACKFGLKGEAYQLVTEMRNNGLAPGAITWRILHKLHQSETMKSPPKDLT 126
               YNIVINTACK GLKGEAYQLVTEMR NGL P A+TWRILHKLHQ+E  +S PKDLT
Sbjct: 649 ----YNIVINTACKLGLKGEAYQLVTEMRKNGLTPDAVTWRILHKLHQTEMTQSRPKDLT 699

Query: 127 SQPRDGRDLTDLKD 141
           +QP DG D T+LK+
Sbjct: 709 NQPTDGLDQTELKN 699

[Close]
BLAST of Moc06g03920 vs. NCBI nr
Match: XP_023515599.1 (pentatricopeptide repeat-containing protein At3g18020 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.4 bits (311), Expect = 7.7e-25
Identity = 62/135 (45.93%), Postives = 80/135 (59.26%), Query Frame = 0 

Query: 6   SVHEEFAYGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSHNSISKELNLGTHHLNLQ 65
           ++H+ F Y  ++  LC + + + A    Y +   G +P +                    
Sbjct: 588 NIHDSFVYSAILKGLCLSSKFNEACHFLYELADSGVSPNIFC------------------ 647

Query: 66  IRLWGYNIVINTACKFGLKGEAYQLVTEMRNNGLAPGAITWRILHKLHQSETMKSPPKDL 125
                YNIVINTACK GLKGEAYQLVTEMR NGL P A+TWRILHKLHQ+E  +S PKD+
Sbjct: 648 -----YNIVINTACKLGLKGEAYQLVTEMRKNGLTPDAVTWRILHKLHQNEMTQSRPKDV 699

Query: 126 TSQPRDGRDLTDLKD 141
           T+QP DG D T+LK+
Sbjct: 708 TNQPTDGLDQTELKN 699

[Close]
BLAST of Moc06g03920 vs. ExPASy Swiss-Prot
Match: Q9LSK8 (Pentatricopeptide repeat-containing protein At3g18020 OS=Arabidopsis thaliana OX=3702 GN=At3g18020 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-11
Identity = 40/105 (38.10%), Postives = 53/105 (50.48%), Query Frame = 0 

Query: 5   QSVHEEFAYGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSHNSISKELNLGTHHLNL 64
           +SV+ EFAYG MIDSLC+ RR+HGA+RI YIM+ +G  P                     
Sbjct: 302 ESVNVEFAYGHMIDSLCRYRRNHGAARIVYIMKSKGLKP--------------------- 361

Query: 65  QIRLWGYNIVINTACKFGLKGEAYQLVTEMRNNGLAPGAITWRIL 110
             R   YN +I+  CK G    AYQL+ E       P   T+++L
Sbjct: 362 --RRTSYNAIIHGLCKDGGCMRAYQLLEEGSEFEFFPSEYTYKLL 383

[Close]
BLAST of Moc06g03920 vs. ExPASy Swiss-Prot
Match: Q9FJE6 (Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana OX=3702 GN=At5g59900 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.3e-06
Identity = 34/111 (30.63%), Postives = 52/111 (46.85%), Query Frame = 0 

Query: 11  FAYGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSHNSI------SKELNLGTHHL-- 70
           F Y  +IDSLCK R+ H A  +   M K G  P  ++++ +        +L+     L  
Sbjct: 368 FVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGE 427

Query: 71  ----NLQIRLWGYNIVINTACKFGLKGEAYQLVTEMRNNGLAPGAITWRIL 110
                L++ ++ YN +IN  CKFG    A   + EM N  L P  +T+  L
Sbjct: 428 MVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSL 478

[Close]
BLAST of Moc06g03920 vs. ExPASy Swiss-Prot
Match: Q9CAN5 (Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g63080 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 7.1e-05
Identity = 33/133 (24.81%), Postives = 60/133 (45.11%), Query Frame = 0 

Query: 13  YGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSHNSISK------------ELNLGTH 72
           Y  ++D LCK  +   A  +   ++K    P + ++N +S+            +L     
Sbjct: 453 YNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLS 512

Query: 73  HLNLQIRLWGYNIVINTACKFGLKGEAYQLVTEMRNNGLAPGAITWRILHKLHQSETMKS 132
              ++  +  YN +I+  CK GLK EAY L  +M+ +G  P + T+  L + H  +  K+
Sbjct: 513 LKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKA 572

Query: 133 PPKDLTSQPRDGR 134
              +L  + R  R
Sbjct: 573 ASAELIKEMRSCR 585

[Close]
BLAST of Moc06g03920 vs. ExPASy Swiss-Prot
Match: Q9SS81 (Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana OX=3702 GN=At3g09060 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 38/113 (33.63%), Postives = 49/113 (43.36%), Query Frame = 0 

Query: 11  FAYGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSH------NSISKELNLGTHHLNL 70
           +AY  +ID LCK +R   AS +   M K G    L SH        + ++  LG     L
Sbjct: 430 YAYASIIDCLCKKKRLEEASNLVKEMSKHGVE--LNSHVCNALIGGLIRDSRLGEASFFL 489

Query: 71  --------QIRLWGYNIVINTACKFGLKGEAYQLVTEMRNNGLAPGAITWRIL 110
                   +  +  YNI+I   CK G  GEA   V EM  NG  P   T+ IL
Sbjct: 490 REMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSIL 540

[Close]
BLAST of Moc06g03920 vs. ExPASy Swiss-Prot
Match: B8Y6I0 (Pentatricopeptide repeat-containing protein 10, chloroplastic OS=Zea mays OX=4577 GN=PPR10 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 33/126 (26.19%), Postives = 61/126 (48.41%), Query Frame = 0 

Query: 13  YGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSHNSI-------------SKELNLGT 72
           +  M+    K   +  A+ +   +++ G +P L+++NS+              K LN   
Sbjct: 599 FNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLK 658

Query: 73  HHLNLQIRLWGYNIVINTACKFGLKGEAYQLVTEMRNNGLAPGAITWRILHKLHQSETMK 126
               ++  +  YN VIN  CK GL  EA ++++EM  +G+AP A+T+  L   + S  M 
Sbjct: 659 CSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSSLEMF 718

[Close]
BLAST of Moc06g03920 vs. ExPASy TrEMBL
Match: A0A6J1C2H5 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g18020 OS=Momordica charantia OX=3673 GN=LOC111006840 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.1e-37
Identity = 130/367 (35.42%), Postives = 133/367 (36.24%), Query Frame = 0 

Query: 1   MPQGQSVHEEFAYGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSHNSI--------- 60
           MPQGQSVHEEFAYGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSHNSI         
Sbjct: 291 MPQGQSVHEEFAYGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSHNSIXQGIEFGYS 350

Query: 61  --------------------SKE------------------------------------- 120
                               +KE                                     
Sbjct: 351 PSELTNKVLVEGLCLEIDIQAKEVFQIMIDKEGVDRTXIYNIYLRAICLANKSTELLNTF 410

Query: 121 ----------------------------------------------------------LN 141
                                                                     LN
Sbjct: 411 VVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLN 470

[Close]
BLAST of Moc06g03920 vs. ExPASy TrEMBL
Match: A0A6J1BRQ7 (pentatricopeptide repeat-containing protein At3g18020-like OS=Momordica charantia OX=3673 GN=LOC111005146 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.8e-26
Identity = 64/133 (48.12%), Postives = 79/133 (59.40%), Query Frame = 0 

Query: 7   VHEEFAYGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSHNSISKELNLGTHHLNLQI 66
           +H+ F Y  ++  LC + + + A    Y +   G +P +                     
Sbjct: 595 IHDSFVYSAILKGLCNSGKFNEACHFLYELADSGVSPNIFC------------------- 654

Query: 67  RLWGYNIVINTACKFGLKGEAYQLVTEMRNNGLAPGAITWRILHKLHQSETMKSPPKDLT 126
               YNIVINTACKFG KGEAYQLVTEMR NGLAP A+TWRILHKLHQSE ++S PKDL+
Sbjct: 655 ----YNIVINTACKFGFKGEAYQLVTEMRKNGLAPDAVTWRILHKLHQSEAVQSHPKDLS 704

Query: 127 SQPRDGRDLTDLK 140
           SQP  G DL DL+
Sbjct: 715 SQPSHGLDLIDLE 704

[Close]
BLAST of Moc06g03920 vs. ExPASy TrEMBL
Match: A0A6J1E5H1 (pentatricopeptide repeat-containing protein At3g18020 OS=Cucurbita moschata OX=3662 GN=LOC111429668 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.2e-25
Identity = 63/134 (47.01%), Postives = 79/134 (58.96%), Query Frame = 0 

Query: 7   VHEEFAYGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSHNSISKELNLGTHHLNLQI 66
           +H+ F Y  ++  LC + + + A    Y +   G +P +                     
Sbjct: 589 IHDSFVYSAILKGLCLSSKFNEACHFLYELADSGVSPNIFC------------------- 648

Query: 67  RLWGYNIVINTACKFGLKGEAYQLVTEMRNNGLAPGAITWRILHKLHQSETMKSPPKDLT 126
               YNIVINTACK GLKGEAYQLVTEMR NGL P A+TWRILHKLHQ+E  +S PKDLT
Sbjct: 649 ----YNIVINTACKLGLKGEAYQLVTEMRKNGLTPDAVTWRILHKLHQNEMTQSRPKDLT 699

Query: 127 SQPRDGRDLTDLKD 141
           +QP DG D T+LK+
Sbjct: 709 NQPTDGLDQTELKN 699

[Close]
BLAST of Moc06g03920 vs. ExPASy TrEMBL
Match: A0A6J1JMF0 (pentatricopeptide repeat-containing protein At3g18020 OS=Cucurbita maxima OX=3661 GN=LOC111485716 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.4e-24
Identity = 62/134 (46.27%), Postives = 78/134 (58.21%), Query Frame = 0 

Query: 7   VHEEFAYGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSHNSISKELNLGTHHLNLQI 66
           +H+ F Y  ++  LC + + + A    Y +   G +P +                     
Sbjct: 589 IHDSFVYSAILKGLCLSSKFNEACHFLYELADSGVSPNIFC------------------- 648

Query: 67  RLWGYNIVINTACKFGLKGEAYQLVTEMRNNGLAPGAITWRILHKLHQSETMKSPPKDLT 126
               YNIVINTACK GLKGEAYQLVTEMR NGL P A+TWRILHKLHQ+E  +S PK LT
Sbjct: 649 ----YNIVINTACKLGLKGEAYQLVTEMRKNGLTPDAVTWRILHKLHQNEMTQSRPKHLT 699

Query: 127 SQPRDGRDLTDLKD 141
           +QP DG D T+LK+
Sbjct: 709 NQPTDGLDQTELKN 699

[Close]
BLAST of Moc06g03920 vs. ExPASy TrEMBL
Match: A0A5J5BFE4 (Uncharacterized protein (Fragment) OS=Nyssa sinensis OX=561372 GN=F0562_025309 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.8e-19
Identity = 77/240 (32.08%), Postives = 98/240 (40.83%), Query Frame = 0 

Query: 2   PQGQSVHEEFAYGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSHNSISKELN----- 61
           PQ +SV+EEFAYGQMIDSLCKA  H+GA+RI YIMRKRGF P L+S+NSI   L+     
Sbjct: 248 PQEKSVYEEFAYGQMIDSLCKAGMHNGAARIVYIMRKRGFTPSLVSYNSIVHGLSKAGGC 307

Query: 62  LGTHHL-------------------NLQIRLW---------------------------- 121
           +  + L                     Q++ W                            
Sbjct: 308 MRAYQLLEEGIEFEYKPRVYLQGFNRRQVKQWKFLKAWTSDVVANSTTYAIIIDGLCESD 367

Query: 122 ---------------------------------------------------------GYN 133
                                                                     YN
Sbjct: 368 RIDEAKRFWDDVIWPSKVHDNFVYAAILKGLCRSGKLNEACDFLYELVDCGVTPNIVNYN 427

[Close]
BLAST of Moc06g03920 vs. TAIR 10
Match: AT3G18020.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-12
Identity = 40/105 (38.10%), Postives = 53/105 (50.48%), Query Frame = 0 

Query: 5   QSVHEEFAYGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSHNSISKELNLGTHHLNL 64
           +SV+ EFAYG MIDSLC+ RR+HGA+RI YIM+ +G  P                     
Sbjct: 302 ESVNVEFAYGHMIDSLCRYRRNHGAARIVYIMKSKGLKP--------------------- 361

Query: 65  QIRLWGYNIVINTACKFGLKGEAYQLVTEMRNNGLAPGAITWRIL 110
             R   YN +I+  CK G    AYQL+ E       P   T+++L
Sbjct: 362 --RRTSYNAIIHGLCKDGGCMRAYQLLEEGSEFEFFPSEYTYKLL 383

[Close]
BLAST of Moc06g03920 vs. TAIR 10
Match: AT5G59900.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 51.6 bits (122), Expect = 5.9e-07
Identity = 34/111 (30.63%), Postives = 52/111 (46.85%), Query Frame = 0 

Query: 11  FAYGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSHNSI------SKELNLGTHHL-- 70
           F Y  +IDSLCK R+ H A  +   M K G  P  ++++ +        +L+     L  
Sbjct: 368 FVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGE 427

Query: 71  ----NLQIRLWGYNIVINTACKFGLKGEAYQLVTEMRNNGLAPGAITWRIL 110
                L++ ++ YN +IN  CKFG    A   + EM N  L P  +T+  L
Sbjct: 428 MVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSL 478

[Close]
BLAST of Moc06g03920 vs. TAIR 10
Match: AT1G63080.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 5.0e-06
Identity = 33/133 (24.81%), Postives = 60/133 (45.11%), Query Frame = 0 

Query: 13  YGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSHNSISK------------ELNLGTH 72
           Y  ++D LCK  +   A  +   ++K    P + ++N +S+            +L     
Sbjct: 453 YNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLS 512

Query: 73  HLNLQIRLWGYNIVINTACKFGLKGEAYQLVTEMRNNGLAPGAITWRILHKLHQSETMKS 132
              ++  +  YN +I+  CK GLK EAY L  +M+ +G  P + T+  L + H  +  K+
Sbjct: 513 LKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKA 572

Query: 133 PPKDLTSQPRDGR 134
              +L  + R  R
Sbjct: 573 ASAELIKEMRSCR 585

[Close]
BLAST of Moc06g03920 vs. TAIR 10
Match: AT3G09060.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 8.6e-06
Identity = 38/113 (33.63%), Postives = 49/113 (43.36%), Query Frame = 0 

Query: 11  FAYGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSH------NSISKELNLGTHHLNL 70
           +AY  +ID LCK +R   AS +   M K G    L SH        + ++  LG     L
Sbjct: 430 YAYASIIDCLCKKKRLEEASNLVKEMSKHGVE--LNSHVCNALIGGLIRDSRLGEASFFL 489

Query: 71  --------QIRLWGYNIVINTACKFGLKGEAYQLVTEMRNNGLAPGAITWRIL 110
                   +  +  YNI+I   CK G  GEA   V EM  NG  P   T+ IL
Sbjct: 490 REMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSIL 540

[Close]
BLAST of Moc06g03920 vs. TAIR 10
Match: AT5G39710.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 2.5e-05
Identity = 29/118 (24.58%), Postives = 54/118 (45.76%), Query Frame = 0 

Query: 9   EEFAYGQMIDSLCKARRHHGASRIAYIMRKRGFNPGLLSHNSI------SKELNLGTHHL 68
           +E  Y  +I   CK    H A  +   M + G  P ++++ S+      +  +N     L
Sbjct: 309 DEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFL 368

Query: 69  NLQIRLWG-------YNIVINTACKFGLKGEAYQLVTEMRNNGLAPGAITWRILHKLH 114
           + Q+R+ G       Y  +++   + G   EAY+++ EM +NG +P  +T+  L   H
Sbjct: 369 D-QMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGH 425

The following BLAST results are available for this feature:
BLAST of Moc06g03920 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022134613.12.3e-3735.42LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g18020 [Momo... [more]
XP_022132241.11.2e-2548.12pentatricopeptide repeat-containing protein At3g18020-like [Momordica charantia]... [more]
XP_022921380.14.5e-2547.01pentatricopeptide repeat-containing protein At3g18020 [Cucurbita moschata][more]
KAG7023322.14.5e-2547.01Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_023515599.17.7e-2545.93pentatricopeptide repeat-containing protein At3g18020 [Cucurbita pepo subsp. pep... [more]
BLAST of Moc06g03920 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LSK81.7e-1138.10Pentatricopeptide repeat-containing protein At3g18020 OS=Arabidopsis thaliana OX... [more]
Q9FJE68.3e-0630.63Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis th... [more]
Q9CAN57.1e-0524.81Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidop... [more]
Q9SS811.2e-0433.63Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana OX... [more]
B8Y6I01.2e-0426.19Pentatricopeptide repeat-containing protein 10, chloroplastic OS=Zea mays OX=457... [more]
BLAST of Moc06g03920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C2H51.1e-3735.42LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g18020 OS=Mo... [more]
A0A6J1BRQ75.8e-2648.12pentatricopeptide repeat-containing protein At3g18020-like OS=Momordica charanti... [more]
A0A6J1E5H12.2e-2547.01pentatricopeptide repeat-containing protein At3g18020 OS=Cucurbita moschata OX=3... [more]
A0A6J1JMF01.4e-2446.27pentatricopeptide repeat-containing protein At3g18020 OS=Cucurbita maxima OX=366... [more]
A0A5J5BFE41.8e-1932.08Uncharacterized protein (Fragment) OS=Nyssa sinensis OX=561372 GN=F0562_025309 P... [more]
BLAST of Moc06g03920 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G18020.11.2e-1238.10Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G59900.15.9e-0730.63Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G63080.15.0e-0624.81Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G09060.18.6e-0633.63Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G39710.12.5e-0524.58Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 71..99
e-value: 0.0043
score: 17.2
coord: 12..41
e-value: 0.017
score: 15.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 71..102
e-value: 6.3E-4
score: 17.7
coord: 12..43
e-value: 1.3E-4
score: 19.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 67..101
score: 9.536388
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 9.602157
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..126
e-value: 4.8E-13
score: 50.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 115..140
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..140
NoneNo IPR availablePANTHERPTHR47942TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 68..120
NoneNo IPR availablePANTHERPTHR47942:SF37OS07G0674300 PROTEINcoord: 68..120
NoneNo IPR availablePANTHERPTHR47942:SF37OS07G0674300 PROTEINcoord: 1..56
NoneNo IPR availablePANTHERPTHR47942TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 1..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g03920.1Moc06g03920.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding