Moc06g03550 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g03550
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	VQ domain-containing protein
Location	chr6: 2526895 .. 2528005 (+)
RNA-Seq Expression	Moc06g03550
Synteny	Moc06g03550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCCTCAACAGCTCCATGGGAAGAGGGATAATGGCAGTACCACCGCCAATAATGGCAACGGCAATGGCAATGGATTGTGTCCGCCTCCGTTGAAGATCAATAAGGATTCTCATTTCATCAGAAAATCCTCGTCGTCTTCCTCTTCTCCTTCCTCGTCTTCCTCTTCCACCTCGTCGCTCGTCAATGGCGTCGTAGGCGCCGGCTGCGCCAAGCCGCCGCAGCGGCATCCGGTGATTATATACACGCATTCTCCCAAAATCATCCACACGCATCCTCGAGACTTCATGGCGTTGGTTCAGAAGCTCACCGGATTGTCTCGCTCCGATGACGAAGCGGGAGCTAATTCTCCGAACGCGACGAAATGTGGCGAGGAGAATAAAATCATTAGCTCCAAAGTCGTGGTGACGAGTGACGATAATGAGTCGTCGTCCGTTGTGACGACGGATGAAAATTGCTGCGGCAGCGGCGTGGTGGAAGGTCAGGTTAATTCGTGTTTCGCTCCGCCGATGTTCGAGCCACCGCCGCCGCCACCGCCACCGCAAGTAGCGAGTTCTTACCTAACGAACATCCCTGTTTACAGGCCGAATTCGACGGACTTTTTGTGCTCTAATCATCAACCGTTTTTTAACTACAACGATTCTTCTTTGCTTTTTGGTGCTCCAAATATCCATTCTCTTTCGTCCGCTAATTCAACATTGAATGGAATTAATGATTTCTGCGACTATAGCGAATATTAGGTTTTTTTCTTCTTTTTCCTTTTTGTTGGGGAGGGATTATTTGACCCCATTTGATTTTGAAGCAAATAAAACAATAAAACTCGTTCCGTTCCCGAGACAAATCTCTACTGGGGAACTAATTTTTGCAATTTCGGTAGGAAAACGAGTTCCTTGAGTCAGTCACCTTAAAGAACTTCGATCAATTTTATAGAACATATAGAATATATAGTAACGGTATGATCTCCAACTTTTTTATCTTTCTATTTAACTTTTTCTATTTCTTCAACTTGTATTGGAGTATGTTTCAGAAGAGATGAAGTTTTGCAATAAAATGAAAGGAGCTGGTGCAATGGAAGTTGAGGTTCATCCAATTCAACATCTTGCCTGGTGA

mRNA sequence

ATGAGCCCTCAACAGCTCCATGGGAAGAGGGATAATGGCAGTACCACCGCCAATAATGGCAACGGCAATGGCAATGGATTGTGTCCGCCTCCGTTGAAGATCAATAAGGATTCTCATTTCATCAGAAAATCCTCGTCGTCTTCCTCTTCTCCTTCCTCGTCTTCCTCTTCCACCTCGTCGCTCGTCAATGGCGTCGTAGGCGCCGGCTGCGCCAAGCCGCCGCAGCGGCATCCGGTGATTATATACACGCATTCTCCCAAAATCATCCACACGCATCCTCGAGACTTCATGGCGTTGGTTCAGAAGCTCACCGGATTGTCTCGCTCCGATGACGAAGCGGGAGCTAATTCTCCGAACGCGACGAAATGTGGCGAGGAGAATAAAATCATTAGCTCCAAAGTCGTGGTGACGAGTGACGATAATGAGTCGTCGTCCGTTGTGACGACGGATGAAAATTGCTGCGGCAGCGGCGTGGTGGAAGAAGAGATGAAGTTTTGCAATAAAATGAAAGGAGCTGGTGCAATGGAAGTTGAGGTTCATCCAATTCAACATCTTGCCTGGTGA

Coding sequence (CDS)

ATGAGCCCTCAACAGCTCCATGGGAAGAGGGATAATGGCAGTACCACCGCCAATAATGGCAACGGCAATGGCAATGGATTGTGTCCGCCTCCGTTGAAGATCAATAAGGATTCTCATTTCATCAGAAAATCCTCGTCGTCTTCCTCTTCTCCTTCCTCGTCTTCCTCTTCCACCTCGTCGCTCGTCAATGGCGTCGTAGGCGCCGGCTGCGCCAAGCCGCCGCAGCGGCATCCGGTGATTATATACACGCATTCTCCCAAAATCATCCACACGCATCCTCGAGACTTCATGGCGTTGGTTCAGAAGCTCACCGGATTGTCTCGCTCCGATGACGAAGCGGGAGCTAATTCTCCGAACGCGACGAAATGTGGCGAGGAGAATAAAATCATTAGCTCCAAAGTCGTGGTGACGAGTGACGATAATGAGTCGTCGTCCGTTGTGACGACGGATGAAAATTGCTGCGGCAGCGGCGTGGTGGAAGAAGAGATGAAGTTTTGCAATAAAATGAAAGGAGCTGGTGCAATGGAAGTTGAGGTTCATCCAATTCAACATCTTGCCTGGTGA

Protein sequence

MSPQQLHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSSSSSPSSSSSSTSSLVNGVVGAGCAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDEAGANSPNATKCGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEEEMKFCNKMKGAGAMEVEVHPIQHLAW

Homology

[Close]

BLAST of Moc06g03550 vs. NCBI nr
Match: XP_022135386.1 (VQ motif-containing protein 20 [Momordica charantia])

HSP 1 Score: 312.8 bits (800), Expect = 2.0e-81
Identity = 161/166 (96.99%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MSPQQLHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSSSSSPSSSSSSTSS 60
           MSPQQLHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSSSSSPSSSSSSTSS
Sbjct: 1   MSPQQLHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSSSSSPSSSSSSTSS 60

Query: 61  LVNGVVGAGCAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDEAGANSPNA 120
           LVNGVVGAGCAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDEAGANSPNA
Sbjct: 61  LVNGVVGAGCAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDEAGANSPNA 120

Query: 121 TKCGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEEEMKFC 167
           TKCGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVE ++  C
Sbjct: 121 TKCGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEGQVNSC 166

[Close]

BLAST of Moc06g03550 vs. NCBI nr
Match: XP_038876677.1 (VQ motif-containing protein 20 [Benincasa hispida])

HSP 1 Score: 208.0 bits (528), Expect = 7.1e-50
Identity = 128/168 (76.19%), Postives = 135/168 (80.36%), Query Frame = 0


Query: 1   MSP---QQLHGKRDNGSTTANNGNGNGN-GLCPPPLKINKDSHFIRKSSSSS--SSPSSS 60
           MSP   QQLHGKRDN + + NNGNGNGN  LCPPPLKINKDSH IRKSSSSS  SSPSSS
Sbjct: 1   MSPQPQQQLHGKRDNQNQSINNGNGNGNKPLCPPPLKINKDSHLIRKSSSSSNTSSPSSS 60

Query: 61  SSSTSSLVNGVVGAGCAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDEAG 120
           SSST+SLVNGV      KPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+SRSDDEA 
Sbjct: 61  SSSTTSLVNGV------KPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEAS 120

Query: 121 ANSPNATKCGEENKIISSKVVVTSDDNESSSVVTTDENCC--GSGVVE 161
             +   TK  +EN   S K VV +DDNESSSVVTTDENCC  GSGVVE
Sbjct: 121 TKA--TTKSVDENNKGSKKAVV-NDDNESSSVVTTDENCCGGGSGVVE 159

[Close]

BLAST of Moc06g03550 vs. NCBI nr
Match: XP_023007145.1 (VQ motif-containing protein 20-like [Cucurbita maxima])

HSP 1 Score: 194.9 bits (494), Expect = 6.2e-46
Identity = 127/174 (72.99%), Postives = 136/174 (78.16%), Query Frame = 0


Query: 1   MSPQQ-LHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSS-SSSPSSSSSST 60
           MSPQQ L+GKRD  +   NN   N   LCPPPLKINKDSHFIRKSSSS S+SPSSSSSST
Sbjct: 1   MSPQQPLNGKRDQSTANTNN---NAKVLCPPPLKINKDSHFIRKSSSSNSASPSSSSSST 60

Query: 61  SS-LVNGVVG----AGCAK-PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDE 120
           SS LVNGV      AG AK PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+SRSD+E
Sbjct: 61  SSQLVNGVAAAVAVAGSAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEE 120

Query: 121 AGANSPNATKCGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEEEMKFC 167
           A   SP ATK G+EN    SKVVV SDDNESSSVV T+ENCC  GVVE ++  C
Sbjct: 121 A---SPKATKSGDENN-KGSKVVV-SDDNESSSVV-TEENCCSGGVVEGQVNSC 165

[Close]

BLAST of Moc06g03550 vs. NCBI nr
Match: KAG7021613.1 (VQ motif-containing protein 20, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.4 bits (490), Expect = 1.8e-45
Identity = 124/174 (71.26%), Postives = 133/174 (76.44%), Query Frame = 0


Query: 1   MSPQQ-LHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSS-SSSPSSSSSST 60
           MSPQQ L+GKRD  +   NN   N   LCPPPLKINKDSHFIRKSSSS S+SPSSSSSST
Sbjct: 1   MSPQQPLNGKRDQSTANTNN---NAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSST 60

Query: 61  SS-LVNGVVG----AGCAK-PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDE 120
           SS LVNG+      AG  K PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+SRSD+E
Sbjct: 61  SSQLVNGIAAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEE 120

Query: 121 AGANSPNATKCGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEEEMKFC 167
           A   SP ATK G+EN   S  VV  SDDNESSSVV TDENCC  GVVE ++  C
Sbjct: 121 A---SPKATKSGDENNKGSKAVV--SDDNESSSVV-TDENCCSGGVVEGQVNSC 165

[Close]

BLAST of Moc06g03550 vs. NCBI nr
Match: XP_023531062.1 (VQ motif-containing protein 20 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 192.2 bits (487), Expect = 4.0e-45
Identity = 124/174 (71.26%), Postives = 133/174 (76.44%), Query Frame = 0


Query: 1   MSPQQ-LHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSS-SSSPSSSSSST 60
           MSPQQ L+GKRD  +   NN   N   LCPPPLKINKDSHFIRKSSSS S+SPSSSSSST
Sbjct: 1   MSPQQPLNGKRDQSTANTNN---NAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSST 60

Query: 61  SS-LVNGVVG----AGCAK-PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDE 120
           SS LVNGV      AG  K PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+SRSD+E
Sbjct: 61  SSQLVNGVAAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEE 120

Query: 121 AGANSPNATKCGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEEEMKFC 167
           A   SP ATK G+EN   S  VV  SDDNESSSVV T+ENCC  GVVE ++  C
Sbjct: 121 A---SPKATKSGDENNKGSKAVV--SDDNESSSVV-TEENCCSGGVVEGQVNSC 165

[Close]

BLAST of Moc06g03550 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-17
Identity = 68/172 (39.53%), Postives = 88/172 (51.16%), Query Frame = 0


Query: 29  PPPLKINKDSHFIRKSSSSSSSPSSSSSSTSSLVNGVVGAGCAKPPQRHPVIIYTHSPKI 88
           PP LK+NKDSH I+K      SPSS SS+             AKP  RHPVIIYTH+P+I
Sbjct: 43  PPTLKVNKDSHVIKK----PPSPSSFSSA-------------AKP--RHPVIIYTHTPRI 102

Query: 89  IHTHPRDFMALVQKLTGLSRSDDEAGANSP-----------------------NATKCGE 148
           IHT+P+DFMALVQKLTG++ SD++ G  +                        N  +CG 
Sbjct: 103 IHTNPKDFMALVQKLTGMTHSDEDLGGGNAMTDPGVVKSINRTVSEPTVDRKNNRNRCGG 162

Query: 149 EN------------KIISSKVVVTSDDNESSSVVTTDENCCGSGVVEEEMKF 166
            N            K I     + S+D+ESSSV+TT+EN    G V   + +
Sbjct: 163 GNNYLRNYSGAGNGKGIFFNNTMISEDSESSSVITTEENIGEHGQVNSSLPY 195

[Close]

BLAST of Moc06g03550 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.7e-06
Identity = 43/120 (35.83%), Postives = 59/120 (49.17%), Query Frame = 0


Query: 25  NGLCPPPLKINKDSHFIRKSSSSSSSPSSSSSSTSSLVNGVVGAGCAKPPQRHPVIIYTH 84
           NG  P  LK+  +SH I+K+SS  S P     ++                   PVIIY H
Sbjct: 10  NGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRAS-------------------PVIIYAH 69

Query: 85  SPKIIHTHPRDFMALVQKLTGLSRSDDEAGANSPNATKCGEENKIISSKVVVTSDDNESS 144
           SPK+IHT   DFMALVQ+LTGL   D+    N+       E +  + ++ V   DDN ++
Sbjct: 70  SPKVIHTRAEDFMALVQRLTGL---DEIIRRNT------SESSSSVVTEEVNVGDDNTAA 101

[Close]

BLAST of Moc06g03550 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.6e-04
Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 29  PPPLKINKDSH-FIRKSSSSSSSPSSSSSSTSSLVNGVVGAGCAKPPQRHPVIIYTHSPK 88
           P PLK+  DSH  I+K   +   P      T            ++PP   PV IYT +P+
Sbjct: 16  PTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQ-----QEPSQSRPPP-GPVNIYTVTPR 75

Query: 89  IIHTHPRDFMALVQKLTGLSRSDDEAGANSPNATKCGEENKIISS 133
           IIHTHP +FM LVQ+LTG + +   + ++S + ++  + + ++ +
Sbjct: 76  IIHTHPNNFMTLVQRLTGQTSTSTTSSSSSSSTSEPKDTSTMVDT 114

[Close]

BLAST of Moc06g03550 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)

HSP 1 Score: 45.4 bits (106), Expect = 8.0e-04
Identity = 35/105 (33.33%), Postives = 47/105 (44.76%), Query Frame = 0


Query: 29  PPPLKINKDSHFIRKSSSSSSSPSSSSSSTSSLVNGVVGAGCAKPP--QRHPVIIYTHSP 88
           P PL ++KDSH I+K     + P +                   PP   R PV+IY  SP
Sbjct: 29  PSPLSVHKDSHKIKKPPKHPAPPPNRDQ---------------PPPYIPREPVVIYAVSP 88

Query: 89  KIIHTHPRDFMALVQKLTGLSR----SDDEAGANSPNATKCGEEN 128
           K++H    +FM +VQ+LTG+S          G  SP A     EN
Sbjct: 89  KVVHATASEFMNVVQRLTGISSGVFLESGGGGDVSPAARLASTEN 118

[Close]

BLAST of Moc06g03550 vs. ExPASy TrEMBL
Match: A0A6J1C0L6 (VQ motif-containing protein 20 OS=Momordica charantia OX=3673 GN=LOC111007349 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 9.9e-82
Identity = 161/166 (96.99%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MSPQQLHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSSSSSPSSSSSSTSS 60
           MSPQQLHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSSSSSPSSSSSSTSS
Sbjct: 1   MSPQQLHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSSSSSPSSSSSSTSS 60

Query: 61  LVNGVVGAGCAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDEAGANSPNA 120
           LVNGVVGAGCAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDEAGANSPNA
Sbjct: 61  LVNGVVGAGCAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDEAGANSPNA 120

Query: 121 TKCGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEEEMKFC 167
           TKCGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVE ++  C
Sbjct: 121 TKCGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEGQVNSC 166

[Close]

BLAST of Moc06g03550 vs. ExPASy TrEMBL
Match: A0A6J1L266 (VQ motif-containing protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111499724 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 3.0e-46
Identity = 127/174 (72.99%), Postives = 136/174 (78.16%), Query Frame = 0


Query: 1   MSPQQ-LHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSS-SSSPSSSSSST 60
           MSPQQ L+GKRD  +   NN   N   LCPPPLKINKDSHFIRKSSSS S+SPSSSSSST
Sbjct: 1   MSPQQPLNGKRDQSTANTNN---NAKVLCPPPLKINKDSHFIRKSSSSNSASPSSSSSST 60

Query: 61  SS-LVNGVVG----AGCAK-PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDE 120
           SS LVNGV      AG AK PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+SRSD+E
Sbjct: 61  SSQLVNGVAAAVAVAGSAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEE 120

Query: 121 AGANSPNATKCGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEEEMKFC 167
           A   SP ATK G+EN    SKVVV SDDNESSSVV T+ENCC  GVVE ++  C
Sbjct: 121 A---SPKATKSGDENN-KGSKVVV-SDDNESSSVV-TEENCCSGGVVEGQVNSC 165

[Close]

BLAST of Moc06g03550 vs. ExPASy TrEMBL
Match: A0A6J1EZ55 (VQ motif-containing protein 20-like OS=Cucurbita moschata OX=3662 GN=LOC111440881 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.0e-45
Identity = 124/174 (71.26%), Postives = 133/174 (76.44%), Query Frame = 0


Query: 1   MSPQQ-LHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSS-SSSPSSSSSST 60
           MSPQQ L+GKRD  +   NN   N   LCPPPLKINKDSHFIRKSSSS S+SPSSSSSST
Sbjct: 1   MSPQQPLNGKRDQSTANTNN---NAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSST 60

Query: 61  SS-LVNGVVG----AGCAK-PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDE 120
           SS LVNGV      AG  K PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+SRSD+E
Sbjct: 61  SSQLVNGVAAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEE 120

Query: 121 AGANSPNATKCGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEEEMKFC 167
           A   SP ATK G+EN   S  VV  SDDNESSSVV T+ENCC  GVVE ++  C
Sbjct: 121 A---SPKATKSGDENNKGSKAVV--SDDNESSSVV-TEENCCSGGVVEGQVNSC 165

[Close]

BLAST of Moc06g03550 vs. ExPASy TrEMBL
Match: A0A0A0LKA6 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G350280 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 4.8e-44
Identity = 120/170 (70.59%), Postives = 129/170 (75.88%), Query Frame = 0


Query: 1   MSP---QQLHGKRDNGSTTANNGNGNGNGLCPPP-LKINKDSHFIRKSSSSS--SSPSSS 60
           MSP   QQ+HGKRDN   T NN N     L PPP LKINKDSH IRKSSSSS  SSPSSS
Sbjct: 1   MSPQQQQQIHGKRDN--QTNNNAN---KPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSS 60

Query: 61  SSSTSSLVNGVVGAGCAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDEAG 120
           SSST+SL+NGV+    AKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+SRSDDEA 
Sbjct: 61  SSSTTSLLNGVIPTAAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEAS 120

Query: 121 ANSPNATKCGEENKIISSKVVVTSDDNESSSVVTTDENCCG----SGVVE 161
             +   +   E NK  +SKVV  +DDNESSSVVTTDENCCG    SG VE
Sbjct: 121 TKATAKSVVDENNK--ASKVV--NDDNESSSVVTTDENCCGGSGSSGAVE 161

[Close]

BLAST of Moc06g03550 vs. ExPASy TrEMBL
Match: A0A1S3BXM8 (VQ motif-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103494334 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.4e-43
Identity = 119/186 (63.98%), Postives = 126/186 (67.74%), Query Frame = 0


Query: 1   MSP-QQLHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSSS----SSPSSSS 60
           MSP QQ+HGKRDN      N NGN   LCPPPLKINKDSH IRK+SSSS    SSPSSSS
Sbjct: 1   MSPQQQIHGKRDN----QINNNGNKPILCPPPLKINKDSHLIRKTSSSSNNTTSSPSSSS 60

Query: 61  SSTSSLVNGV--VGAGCAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDEA 120
           SST+SLVNGV    A  AKP QRHPVIIYTHSPK+IHTHPRDFMALVQKLTG+SRSDD  
Sbjct: 61  SSTTSLVNGVAAAAAAAAKPLQRHPVIIYTHSPKVIHTHPRDFMALVQKLTGMSRSDDHE 120

Query: 121 GANSPNATK--CGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEEEMKFCNKMKG 178
            +     TK    E N        V SDDNESSSVVTTDENCCG G             G
Sbjct: 121 ASTKLATTKPVVDENNNNNKGSKAVVSDDNESSSVVTTDENCCGGG------------GG 170

[Close]

BLAST of Moc06g03550 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 91.3 bits (225), Expect = 9.0e-19
Identity = 68/172 (39.53%), Postives = 88/172 (51.16%), Query Frame = 0


Query: 29  PPPLKINKDSHFIRKSSSSSSSPSSSSSSTSSLVNGVVGAGCAKPPQRHPVIIYTHSPKI 88
           PP LK+NKDSH I+K      SPSS SS+             AKP  RHPVIIYTH+P+I
Sbjct: 43  PPTLKVNKDSHVIKK----PPSPSSFSSA-------------AKP--RHPVIIYTHTPRI 102

Query: 89  IHTHPRDFMALVQKLTGLSRSDDEAGANSP-----------------------NATKCGE 148
           IHT+P+DFMALVQKLTG++ SD++ G  +                        N  +CG 
Sbjct: 103 IHTNPKDFMALVQKLTGMTHSDEDLGGGNAMTDPGVVKSINRTVSEPTVDRKNNRNRCGG 162

Query: 149 EN------------KIISSKVVVTSDDNESSSVVTTDENCCGSGVVEEEMKF 166
            N            K I     + S+D+ESSSV+TT+EN    G V   + +
Sbjct: 163 GNNYLRNYSGAGNGKGIFFNNTMISEDSESSSVITTEENIGEHGQVNSSLPY 195

[Close]

BLAST of Moc06g03550 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-07
Identity = 43/120 (35.83%), Postives = 59/120 (49.17%), Query Frame = 0


Query: 25  NGLCPPPLKINKDSHFIRKSSSSSSSPSSSSSSTSSLVNGVVGAGCAKPPQRHPVIIYTH 84
           NG  P  LK+  +SH I+K+SS  S P     ++                   PVIIY H
Sbjct: 10  NGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRAS-------------------PVIIYAH 69

Query: 85  SPKIIHTHPRDFMALVQKLTGLSRSDDEAGANSPNATKCGEENKIISSKVVVTSDDNESS 144
           SPK+IHT   DFMALVQ+LTGL   D+    N+       E +  + ++ V   DDN ++
Sbjct: 70  SPKVIHTRAEDFMALVQRLTGL---DEIIRRNT------SESSSSVVTEEVNVGDDNTAA 101

[Close]

BLAST of Moc06g03550 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 49.3 bits (116), Expect = 3.9e-06
Identity = 36/94 (38.30%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 29  PPPLKINKDSH-FIRKSSSSSSSPSSSSSSTSSLVNGVVGAGCAKPPQRHPVIIYTHSPK 88
           P PLK+  DSH  I+K   +   P      T            ++PP   PVIIYT SP+
Sbjct: 16  PIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQ-----QEPSQSRPPP-GPVIIYTVSPR 75

Query: 89  IIHTHPRDFMALVQKLTGLSRSDDEAGANSPNAT 122
           IIHTHP +FM LVQ+LTG + +   + + S + +
Sbjct: 76  IIHTHPNNFMTLVQRLTGKTSTSTTSSSYSSSTS 103

[Close]

BLAST of Moc06g03550 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 46.6 bits (109), Expect = 2.5e-05
Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 29  PPPLKINKDSH-FIRKSSSSSSSPSSSSSSTSSLVNGVVGAGCAKPPQRHPVIIYTHSPK 88
           P PLK+  DSH  I+K   +   P      T            ++PP   PV IYT +P+
Sbjct: 16  PTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQ-----QEPSQSRPPP-GPVNIYTVTPR 75

Query: 89  IIHTHPRDFMALVQKLTGLSRSDDEAGANSPNATKCGEENKIISS 133
           IIHTHP +FM LVQ+LTG + +   + ++S + ++  + + ++ +
Sbjct: 76  IIHTHPNNFMTLVQRLTGQTSTSTTSSSSSSSTSEPKDTSTMVDT 114

[Close]

BLAST of Moc06g03550 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 )

HSP 1 Score: 45.4 bits (106), Expect = 5.7e-05
Identity = 35/105 (33.33%), Postives = 47/105 (44.76%), Query Frame = 0


Query: 29  PPPLKINKDSHFIRKSSSSSSSPSSSSSSTSSLVNGVVGAGCAKPP--QRHPVIIYTHSP 88
           P PL ++KDSH I+K     + P +                   PP   R PV+IY  SP
Sbjct: 29  PSPLSVHKDSHKIKKPPKHPAPPPNRDQ---------------PPPYIPREPVVIYAVSP 88

Query: 89  KIIHTHPRDFMALVQKLTGLSR----SDDEAGANSPNATKCGEEN 128
           K++H    +FM +VQ+LTG+S          G  SP A     EN
Sbjct: 89  KVVHATASEFMNVVQRLTGISSGVFLESGGGGDVSPAARLASTEN 118

The following BLAST results are available for this feature:

BLAST of Moc06g03550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135386.1	2.0e-81	96.99	VQ motif-containing protein 20 [Momordica charantia]	[more]
XP_038876677.1	7.1e-50	76.19	VQ motif-containing protein 20 [Benincasa hispida]	[more]
XP_023007145.1	6.2e-46	72.99	VQ motif-containing protein 20-like [Cucurbita maxima]	[more]
KAG7021613.1	1.8e-45	71.26	VQ motif-containing protein 20, partial [Cucurbita argyrosperma subsp. argyrospe...	[more]
XP_023531062.1	4.0e-45	71.26	VQ motif-containing protein 20 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Moc06g03550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LS54	1.3e-17	39.53	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
Q9CA36	1.7e-06	35.83	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
F4HWF9	3.6e-04	32.38	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]
Q8LGD5	8.0e-04	33.33	Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2	[more]

BLAST of Moc06g03550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C0L6	9.9e-82	96.99	VQ motif-containing protein 20 OS=Momordica charantia OX=3673 GN=LOC111007349 PE...	[more]
A0A6J1L266	3.0e-46	72.99	VQ motif-containing protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111499724 ...	[more]
A0A6J1EZ55	2.0e-45	71.26	VQ motif-containing protein 20-like OS=Cucurbita moschata OX=3662 GN=LOC11144088...	[more]
A0A0A0LKA6	4.8e-44	70.59	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G350280 PE=4 SV=...	[more]
A0A1S3BXM8	1.4e-43	63.98	VQ motif-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103494334 PE=4 SV=1	[more]

BLAST of Moc06g03550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18360.1	9.0e-19	39.53	VQ motif-containing protein	[more]
AT1G68450.1	1.2e-07	35.83	VQ motif-containing protein	[more]
AT1G21326.1	3.9e-06	38.30	VQ motif-containing protein	[more]
AT1G21320.1	2.5e-05	32.38	nucleotide binding;nucleic acid binding	[more]
AT3G18690.1	5.7e-05	33.33	MAP kinase substrate 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 83..107 e-value: 1.8E-11 score: 43.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..62
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 1..161
IPR039832	VQ motif-containing protein 20	PANTHER	PTHR33143:SF4	VQ MOTIF-CONTAINING PROTEIN 20	coord: 1..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g03550.1	Moc06g03550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
cellular_component	GO:0005634	nucleus