Moc06g03380 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g03380
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	40S ribosomal protein S28-1-like
Location	chr6: 2410449 .. 2414572 (-)
RNA-Seq Expression	Moc06g03380
Synteny	Moc06g03380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTCGCCACTGCCATTGTTGACTGAGGTGATATCATGAATACTCGACCTTCTTCTATCTCTGTTCATTGAGTTCAATCGAATGAAATACTTTTGTGCATGACTGGCTACTTGTGTCGGTGTCCTGGATATAACGAAGTTTCTTGAAATGCTTCTCCAATCCCCTTTCCCAAACTTGTCGAGGCCCAGTAGAAATAACCTGAGAATAGCAAGAGTTAAGAATCTCTCTCAATTCTGTTCTGGATAATGAATCTCTGTATTAATGGGGTAGAATGATTCCTTTCTTAGTCTATATCACAAACAATAGAAGAATACTGATACACTTTCGCCTTTTCTGATCTAATTGATAAATTATAGCTCTCAATGACCCAATATTTGAAGTAATTCCAGGACAGAAGTTGTTTGAAATACACAAACCTGTGTTCTTCCTCTGTCCATGGGATCCCTTTTCTTCTTTCTTGCTCGGACCTGGATCCGCCCTTGGAGTCGTGGGAGAGACCAGAAAATCCACTTCCAAAACCAGAATTGGGTCTTTTATTATTACTGTCAGTACCAGTAGCTCCATGAGGATGAAGATGTTCCTTTTCCTTGGTTGAGCCATTAGTTGCTCCTCCGACAGAAGCATAGTTGGGAATAGGAATTTGGCCTGCCTCAATGGCACCCACGTCTTCCACCAGCATTTGGAAGTGCTGCTTTAAGGCTTCCATGTCTTTGCTTGGAACCATTGAAGCAATCTTTTCCCACATCCCTTCCGAGTCCTTCCCTTCCAATTCTTCAGCCCAATGCATAGCTATGGCGTTTTCAAATGCTTTATCTTCTTCCTTGGTCCAGGCAGCTGATCCAGTAGACATGGTGCAGTGATGTCAGTAAACTCAGATAAATTAGGAGTAGAAATGGTGGGATGGTTTATGGATCAAATCATGCCGAATTGTTTAGTTTTCTGGGGAAGAGCCTGGGCGTTTGGCCAAAAGATAAGAGGAAAGAGGAGAGTGAATGTGGCGTAGGGCAAGGAAGGAGGTGAGTGGTGAAACTATCAATTAAAAGAGGACCACTTTTTGGGGGTTGAAATGACATGTTGTTTGTCATCTTCATACCCCATCAATAATCATACTTGTAGAAACTTTAGAGAGAGAGGGAGAGAGAGACTTTTTGGCCAGACATCAGCAATCATAGAGTAGGTAGTGAGAAATTAGGGGAAGCATAGGTGCAGAGAATCTTCAAAAAAACAACACATTGAACAATGAACAGTAACTTTTCTCACTCATCCCAAGCTCTCTCTCTCACTCTCTGCGTAGTAAAACTGATGTCATCATCAGTAGAGAGGCCCTGAGAAGAAGGGGTCAAAGTTCCATTTGGTCTGTGCCTCCAGGTTTAAGATTATAGATGAATCTTCAGCAGAGAAACCAAAACCAGAAGCAATTTCCAAGAAAAAAGGCTCAAAATCACTCTTATACCAACTGGGTTTTGCTTTTGCCATTCCAATTGCGCTATTATGAACATATGAAATCTTATTTTACCAATGCTTTCTTTACCCTTTTTTTTTTGGTCAGATGGTTTTGTTTTGTTGAGTTTATTATATCAGGAATTGGGTGGCAGCCACAGCCACAGCCACCGTTTGTTATGGGTCAGTGTTGTGTAAATGGGGATGTCTATTTCTCTCTCTCTCTATAAGTATACGTGGTCGATTCTGCACTTCCAGTTTTTGACCCCAAAACTGTACCACAAAAGTATTCTAAGGATCGCGTCCACCTCTGTGATAGTGAGAGAAAGAGAGGAGTGAGAGAGGCCTGCTTAGTCCAGGCTTTAGAATTTGATCGGAGAAATACATTTAGGATGTGTTTGAGAGTGATTTTGATTATGTCACTATTACTTTTCCATTGTTAAAATCACTACACTTTCTATCGATCATATTTGGCAAATTAAAAAATTGATTTTACGAAGGTTGAAGATCACTTTAAAGATGTCATTTAGGTGGTGAAACTTGTGTCTTTTGCTAGTAAAATATTTATGGTTACTTTTATCGTATAAGTGGATCTTTTAAGTGGATTCAAATGTTTATTTGAGAATCATTAGTGGGTGGAGATTAGGGACTTGTTTGAGTATGATTTTAGAATGAGTGATTAGTACTGATATCTGATTTTGTGAAAATTATTTTTATATAGTTATTTTAACGTTTGACTACACATTTTTTCAAGTGATTTTTATATAATTGAAAGTGATTCTAAATTATTAATATTTGAAGTTTAAAGAGAATTTGACAAAATATTTTAGAGAGAGAAAAGCTAAACATACAAACCTTAGAGAGAGATTTTAGAAAGTGAGCTAAAAATTTGGAGAGAGAGATTTTAGAAAGTGAGCTAAAAATTTGGAGTGGGATTACGGAAATTTTAGGAAAAAAAAGAGAGAATAAACAAAATTAAAAATAAATAAAGTTGGAGAGTGACAACAATTTTAGAAAAGAGAAAAAAAAATCTCAAAATTTAACGTGAAAATAAAGGGAATGGAAAGATAATTTTGAAAATTAAAACAAAAACTATTTTAAAAACTAATTTTCTATTAATTTTTTCGTTAAAAAATCACTTTGAGAATCACCTTCAAGTGATTGATCGGAAATCACTGAAAATTTTTCTAAAATCAATTACGAATTCTGGTTAAACATTATATTTTAAAACTAAAGTGATTTTGGAATAAGTAAAAATGATTCTAGTCAAGTGATTTTGGAATAAGTAAAAATGATTCTAGTCAATTGTTTGAGAAGAAATAAAATTTTCTCGGAACTTTGAGACTTTTTAAGCTGGATTCGATTAGGTTGTGTGAAGGAGAACTTGATGTGCCTATTTGAAAGAAAGAAGAGTTGTAACAACATCCACTTATAGAATTGTTGCCAAAGTTGTTGAAGTTCAATGATTTCATGCCCCTCACAGAGCTGATTGCCAAATCAAAGCAGATTAAAAGATTGGATTTTGAAAATTATCTTATACCAAGGATTCCCAATAAGCTCCACTTTCGACTATTCATTGTTGACGAAATTTCTTTTTGAGATAGTTTTGAATCAGCTGCATTGTTTTAATGTATTGTCGATTAACCTTTTGATCATTGATTTCATTTTTGTCCCTCCTCAGAAAAATCTTCGTGTTATTAGATCACTTGAACCGATCAACCCAACCCAAATTGAGTTACGAAGTTTAGGACGATTCACGGGTTTAATAAAAATCTCGACCGAACCGAACCGAATATAATATATATATATTTATAAATGTTTTATGTCTAGGGTTGCCTCCGATCTCATCTCGCGCCTCACAGAACTCTCAATCTCACCTCGCTCTCTTGCCTCTCAGCCCGTCGCCGCCGTCTGTCGTCGTTTGCCGTTCGTCCGCCGCCAGTCTCTCTCGTCTTCGCCTCGAGGTACATTTTGTTTCAGAGAGAATTAACTCAAATCCAGAAAAAATGTCTGTATTTTGGTCTGTCATTTTCCGGTTTATGCATGAAGAATTAAAGGGGCATTGCTCCCATTCTATGAACTTGATTGCCTGATTTTTGGTCTACTTGAGTTTTAGGAAAATTTTTGAGATCCCTGTTCGGGTTGGATTGAGTTGCCTAGTTGAATTGGTTCATAAAGCTCTTATTCGAAGGGCCTCCGTTCAAAAATTTCCAGTAATTGGAATTATATAGCTTTCTTTCTTTACCTGTGATTCTGAATGTTAGGCGCTTCTTAGACTGAGTTATTCTGTAGCTTTGCTGTCGGTACTAGTTTGCTTGTTCATGTAACTTAAAAGGCACTTGAGATTGTTGAACTGGGAAATTGGGGCTAAATAACTTGTACAAGTAATGGTAGATTGCTACTCAGTATCAGAAGTGTAATTTTAAGGGAAAGTGCCTGCTTTGCTGTGATTGTAAGATATACTTTTGGTGGGTCTGTGTAGGATGGAATCTCAGATTAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACCGGATCTAGGGGGCAGGTAACTCAAGTTAGAGTCAAGTTTCTTGATGATCAAAATCGTTACATCATGAGGAATGTGAAGGGACCAGTGAGGGAAGGCGATATTCTGACCCTGCTGGAGTCTGAGAGAGAAGCTAGGAGATTGCGTTGA

mRNA sequence

ATGACGTCGCCACTGCCATTGTTGACTGAGGGTTGCCTCCGATCTCATCTCGCGCCTCACAGAACTCTCAATCTCACCTCGCTCTCTTGCCTCTCAGCCCGTCGCCGCCGTCTGTCGTCGTTTGCCGTTCGTCCGCCGCCAGTCTCTCTCGTCTTCGCCTCGAGGATGGAATCTCAGATTAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACCGGATCTAGGGGGCAGGTAACTCAAGTTAGAGTCAAGTTTCTTGATGATCAAAATCGTTACATCATGAGGAATGTGAAGGGACCAGTGAGGGAAGGCGATATTCTGACCCTGCTGGAGTCTGAGAGAGAAGCTAGGAGATTGCGTTGA

Coding sequence (CDS)

ATGACGTCGCCACTGCCATTGTTGACTGAGGGTTGCCTCCGATCTCATCTCGCGCCTCACAGAACTCTCAATCTCACCTCGCTCTCTTGCCTCTCAGCCCGTCGCCGCCGTCTGTCGTCGTTTGCCGTTCGTCCGCCGCCAGTCTCTCTCGTCTTCGCCTCGAGGATGGAATCTCAGATTAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACCGGATCTAGGGGGCAGGTAACTCAAGTTAGAGTCAAGTTTCTTGATGATCAAAATCGTTACATCATGAGGAATGTGAAGGGACCAGTGAGGGAAGGCGATATTCTGACCCTGCTGGAGTCTGAGAGAGAAGCTAGGAGATTGCGTTGA

Protein sequence

MTSPLPLLTEGCLRSHLAPHRTLNLTSLSCLSARRRRLSSFAVRPPPVSLVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Homology

[Close]

BLAST of Moc06g03380 vs. NCBI nr
Match: XP_022134697.1 (40S ribosomal protein S28-1-like [Momordica charantia])

HSP 1 Score: 231.1 bits (588), Expect = 5.0e-57
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MTSPLPLLTEGCLRSHLAPHRTLNLTSLSCLSARRRRLSSFAVRPPPVSLVFASRMESQI 60
           MTSPLPLLTEGCLRSHLAPHRTLNLTSLSCLSARRRRLSSFAVRPPPVSLVFASRMESQI
Sbjct: 1   MTSPLPLLTEGCLRSHLAPHRTLNLTSLSCLSARRRRLSSFAVRPPPVSLVFASRMESQI 60

Query: 61  KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 120
           KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Sbjct: 61  KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 120

[Close]

BLAST of Moc06g03380 vs. NCBI nr
Match: KAG7961624.1 (hypothetical protein I3843_09G026100 [Carya illinoinensis])

HSP 1 Score: 128.6 bits (322), Expect = 3.5e-26
Identity = 64/71 (90.14%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 50  LVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL 109
           ++ + RMESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTL
Sbjct: 17  IILSRRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 76

Query: 110 LESEREARRLR 121
           LESEREARRLR
Sbjct: 77  LESEREARRLR 87

[Close]

BLAST of Moc06g03380 vs. NCBI nr
Match: KAG4913629.1 (hypothetical protein JHK86_054062 [Glycine max] >KAG4928534.1 hypothetical protein JHK85_055020 [Glycine max] >KAG5084050.1 hypothetical protein JHK84_054088 [Glycine max] >KAG5086819.1 hypothetical protein JHK82_054216 [Glycine max])

HSP 1 Score: 128.6 bits (322), Expect = 3.5e-26
Identity = 68/75 (90.67%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 47  PVSL-VFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGD 106
           PV+L VF  RMESQ+KHA+VVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGD
Sbjct: 6   PVTLDVFNLRMESQVKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGD 65

Query: 107 ILTLLESEREARRLR 121
           ILTLLESEREARRLR
Sbjct: 66  ILTLLESEREARRLR 80

[Close]

BLAST of Moc06g03380 vs. NCBI nr
Match: KGN63808.2 (hypothetical protein Csa_014218 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 3.5e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 55  RMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 114
           RMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 65  RMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 124

Query: 115 EARRLR 121
           EARRLR
Sbjct: 125 EARRLR 130

[Close]

BLAST of Moc06g03380 vs. NCBI nr
Match: PON44916.1 (Ribosomal protein [Parasponia andersonii])

HSP 1 Score: 127.9 bits (320), Expect = 6.0e-26
Identity = 75/102 (73.53%), Postives = 83/102 (81.37%), Query Frame = 0


Query: 22  TLN-LTSLSCLSAR--RRRLSSFAVRPPPVSLVFASRMESQIKHAVVVKVMGRTGSRGQV 81
           TLN  +S S +S R  RRRL +         L  ++RM+SQ+KHAVVVKVMGRTGSRGQV
Sbjct: 54  TLNPASSSSVVSPREPRRRLEALG------DLKLSTRMDSQVKHAVVVKVMGRTGSRGQV 113

Query: 82  TQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 121
           TQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRLR
Sbjct: 114 TQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESEREARRLR 149

[Close]

BLAST of Moc06g03380 vs. ExPASy Swiss-Prot
Match: P46302 (40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-24
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 56  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 115
           M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1   MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 116 ARRLR 121
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of Moc06g03380 vs. ExPASy Swiss-Prot
Match: Q9SR73 (40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.6e-24
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 56  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 115
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 116 ARRLR 121
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of Moc06g03380 vs. ExPASy Swiss-Prot
Match: P34789 (40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 9.9e-24
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 56  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 115
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 116 ARRLR 121
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of Moc06g03380 vs. ExPASy Swiss-Prot
Match: Q6PBK3 (40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 8.7e-20
Identity = 52/68 (76.47%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 53  ASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLES 112
           ASR++  IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLES
Sbjct: 3   ASRVQ-PIKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLES 62

Query: 113 EREARRLR 121
           EREARRLR
Sbjct: 63  EREARRLR 69

[Close]

BLAST of Moc06g03380 vs. ExPASy Swiss-Prot
Match: Q90YP3 (40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 8.7e-20
Identity = 52/68 (76.47%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 53  ASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLES 112
           ASR++  IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLES
Sbjct: 3   ASRVQ-PIKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLES 62

Query: 113 EREARRLR 121
           EREARRLR
Sbjct: 63  EREARRLR 69

[Close]

BLAST of Moc06g03380 vs. ExPASy TrEMBL
Match: A0A6J1C0B5 (40S ribosomal protein S28-1-like OS=Momordica charantia OX=3673 GN=LOC111006903 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.4e-57
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MTSPLPLLTEGCLRSHLAPHRTLNLTSLSCLSARRRRLSSFAVRPPPVSLVFASRMESQI 60
           MTSPLPLLTEGCLRSHLAPHRTLNLTSLSCLSARRRRLSSFAVRPPPVSLVFASRMESQI
Sbjct: 1   MTSPLPLLTEGCLRSHLAPHRTLNLTSLSCLSARRRRLSSFAVRPPPVSLVFASRMESQI 60

Query: 61  KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 120
           KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Sbjct: 61  KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 120

[Close]

BLAST of Moc06g03380 vs. ExPASy TrEMBL
Match: A0A2P5B837 (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_262890 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.9e-26
Identity = 75/102 (73.53%), Postives = 83/102 (81.37%), Query Frame = 0


Query: 22  TLN-LTSLSCLSAR--RRRLSSFAVRPPPVSLVFASRMESQIKHAVVVKVMGRTGSRGQV 81
           TLN  +S S +S R  RRRL +         L  ++RM+SQ+KHAVVVKVMGRTGSRGQV
Sbjct: 54  TLNPASSSSVVSPREPRRRLEALG------DLKLSTRMDSQVKHAVVVKVMGRTGSRGQV 113

Query: 82  TQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 121
           TQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRLR
Sbjct: 114 TQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESEREARRLR 149

[Close]

BLAST of Moc06g03380 vs. ExPASy TrEMBL
Match: A0A5N6R7X9 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013301 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.8e-26
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 47  PVSLVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDI 106
           P   ++  RMESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDI
Sbjct: 28  PDYTLYLCRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 87

Query: 107 LTLLESEREARRLR 121
           LTLLESEREARRLR
Sbjct: 88  LTLLESEREARRLR 101

[Close]

BLAST of Moc06g03380 vs. ExPASy TrEMBL
Match: W9SEX7 (40S ribosomal protein S28 OS=Morus notabilis OX=981085 GN=L484_012438 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.8e-26
Identity = 64/68 (94.12%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 53  ASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLES 112
           ++RMESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLES
Sbjct: 88  STRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLES 147

Query: 113 EREARRLR 121
           EREARRLR
Sbjct: 148 EREARRLR 155

[Close]

BLAST of Moc06g03380 vs. ExPASy TrEMBL
Match: A0A6J1HTG7 (40S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.9e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 56  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 115
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 116 ARRLR 121
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of Moc06g03380 vs. TAIR 10
Match: AT3G10090.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 56  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 115
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 116 ARRLR 121
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of Moc06g03380 vs. TAIR 10
Match: AT5G03850.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 56  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 115
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 116 ARRLR 121
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of Moc06g03380 vs. TAIR 10
Match: AT5G64140.1 (ribosomal protein S28 )

HSP 1 Score: 110.9 bits (276), Expect = 7.1e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 56  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 115
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 116 ARRLR 121
           ARRLR
Sbjct: 61  ARRLR 64

The following BLAST results are available for this feature:

BLAST of Moc06g03380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134697.1	5.0e-57	100.00	40S ribosomal protein S28-1-like [Momordica charantia]	[more]
KAG7961624.1	3.5e-26	90.14	hypothetical protein I3843_09G026100 [Carya illinoinensis]	[more]
KAG4913629.1	3.5e-26	90.67	hypothetical protein JHK86_054062 [Glycine max] >KAG4928534.1 hypothetical prote...	[more]
KGN63808.2	3.5e-26	100.00	hypothetical protein Csa_014218 [Cucumis sativus]	[more]
PON44916.1	6.0e-26	73.53	Ribosomal protein [Parasponia andersonii]	[more]

BLAST of Moc06g03380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46302	1.2e-24	90.77	40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1	[more]
Q9SR73	2.6e-24	92.31	40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1	[more]
P34789	9.9e-24	89.23	40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1	[more]
Q6PBK3	8.7e-20	76.47	40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1	[more]
Q90YP3	8.7e-20	76.47	40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1	[more]

BLAST of Moc06g03380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C0B5	2.4e-57	100.00	40S ribosomal protein S28-1-like OS=Momordica charantia OX=3673 GN=LOC111006903 ...	[more]
A0A2P5B837	2.9e-26	73.53	Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_262890 PE=3 SV=...	[more]
A0A5N6R7X9	3.8e-26	87.84	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013301 PE=3 SV=1	[more]
W9SEX7	3.8e-26	94.12	40S ribosomal protein S28 OS=Morus notabilis OX=981085 GN=L484_012438 PE=3 SV=1	[more]
A0A6J1HTG7	4.9e-26	100.00	40S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=...	[more]

BLAST of Moc06g03380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10090.1	1.9e-25	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G03850.1	1.9e-25	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G64140.1	7.1e-25	89.23	ribosomal protein S28	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000289	Ribosomal protein S28e	PFAM	PF01200	Ribosomal_S28e	coord: 59..119 e-value: 7.7E-32 score: 109.1
IPR000289	Ribosomal protein S28e	PANTHER	PTHR10769	40S RIBOSOMAL PROTEIN S28	coord: 56..120
IPR000289	Ribosomal protein S28e	HAMAP	MF_00292	Ribosomal_S28e	coord: 56..120 score: 21.430906
IPR000289	Ribosomal protein S28e	CDD	cd04457	S1_S28E	coord: 61..120 e-value: 1.85737E-33 score: 109.262
None	No IPR available	GENE3D	2.40.50.140		coord: 54..120 e-value: 5.7E-36 score: 124.2
None	No IPR available	PANTHER	PTHR10769:SF3	40S RIBOSOMAL PROTEIN S28	coord: 56..120
IPR028626	Ribosomal protein S28e conserved site	PROSITE	PS00961	RIBOSOMAL_S28E	coord: 111..119
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 56..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g03380.1	Moc06g03380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0003735	structural constituent of ribosome