Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATAAACCCACTAGTATTTTGGCACTTCCCCAGACTACACAAGAGCTTGCAATTGAGGGCATCAAGCATCTAGAGGAAACGATAGAATCCGCTTTCCAGATCCTCTACTCCATGAATGATGAGCTCTGCAATCCCACGTTATGGTCCACCACTTCTTCAACGGCTACTTCTGCTTTATCAATTGCAAGCCCAAATGGTCCATCTCCGCATTCCACAAATGGAGTTGTAAACGGCGACGCGAGTTCTGAAAGCACTAACCATCACGCTGACACCAGCAGTGGCGGAGGCACCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAATAATTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAGCTCTCAGAATGTAAATTATCAGACTGATCTTTCAACTCTCCGTCTAAGTTCATTGGCCAATGTTTCTCATTTTTCATTTGGTTGTTATTTGGAAAACTCGAGACCGATTCAGAGATATTGAGTTTCCCCACAGTACAAAATGCTTTGCTGAGAACACATGAACTTTTCATATTCAATTTCAGACGAATGCATAAATTTTTTTTTATGTTAATAAGTATTTCTTGCTACAATTTGCACATACTACTCTCGAGCTGGTATTCATTTTCATAACTGCCGATTGATACGTGGACCAACTCCATGTACTACGAATTTGATATATTGCTCACTGGATTGACTTGGTGTTCACCACTGCTGATTAAGCGATTTTAAGCAGTCTCTCGTGTTTTTTTGATAGGCAAAAGCATATGAATCGGGTACGAGTGGTCATGCATCCCCAGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTGTAATCTTAGAAAGGTATTTCATTCTGTCTTCCGCTTGTAAATTCTAGTCAATAGTTTATTTTTTCTTAAGGCTTTCAGGATGTGTCCGAATACTTCCTTTCACTGAATTGCACCAGTTAAAATTTTTAGGCTAAGATTTCGTGAAGGAACTAATACTTCTGGAAATTATTTACTTTTTGGAAACTTTGTAGTCTACTTTCTACTTTCAACGCATGATGCATAGCTATTTATCGATGTATCTGTAATAAGATTTTCTGAAGTGTCTACAAATATTGATGAAACTGTGAAAATTTTAAAGATTTGAGAAACAAGAGTTCTTTTTGTGTTGTTGTATCACCGTCTTAATTTAAACAAAGATTTTGAAACTAAATAGACAATATTGAAAATCAAATATTAAAACTAACGATATTTTGTAGATAATATACTTCTTCATTCGTCTCATTTTTATTCTTTGGTAAGGTCCTCGAGCGATATTTTATTCTTCCTTCAACTGCTTTCTTATAAGGATCCGTGTATCTGTGGTCTCTTTGCAGGAACTTGTCAATAAGAACTTGCATCTCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATATATCTACATGGCAAAGTCCTTGTTCAGTTTGA
mRNA sequence
ATGGAAGATAAACCCACTAGTATTTTGGCACTTCCCCAGACTACACAAGAGCTTGCAATTGAGGGCATCAAGCATCTAGAGGAAACGATAGAATCCGCTTTCCAGATCCTCTACTCCATGAATGATGAGCTCTGCAATCCCACGTTATGGTCCACCACTTCTTCAACGGCTACTTCTGCTTTATCAATTGCAAGCCCAAATGGTCCATCTCCGCATTCCACAAATGGAGTTGTAAACGGCGACGCGAGTTCTGAAAGCACTAACCATCACGCTGACACCAGCAGTGGCGGAGGCACCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAATAATTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAGCTCTCAGAATGCAAAAGCATATGAATCGGGTACGAGTGGTCATGCATCCCCAGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTGTAATCTTAGAAAGGAACTTGTCAATAAGAACTTGCATCTCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATATATCTACATGGCAAAGTCCTTGTTCAGTTTGA
Coding sequence (CDS)
ATGGAAGATAAACCCACTAGTATTTTGGCACTTCCCCAGACTACACAAGAGCTTGCAATTGAGGGCATCAAGCATCTAGAGGAAACGATAGAATCCGCTTTCCAGATCCTCTACTCCATGAATGATGAGCTCTGCAATCCCACGTTATGGTCCACCACTTCTTCAACGGCTACTTCTGCTTTATCAATTGCAAGCCCAAATGGTCCATCTCCGCATTCCACAAATGGAGTTGTAAACGGCGACGCGAGTTCTGAAAGCACTAACCATCACGCTGACACCAGCAGTGGCGGAGGCACCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAATAATTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAGCTCTCAGAATGCAAAAGCATATGAATCGGGTACGAGTGGTCATGCATCCCCAGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTGTAATCTTAGAAAGGAACTTGTCAATAAGAACTTGCATCTCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATATATCTACATGGCAAAGTCCTTGTTCAGTTTGA
Protein sequence
MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV
Homology
BLAST of Moc06g00470 vs. NCBI nr
Match:
XP_022134927.1 (mediator of RNA polymerase II transcription subunit 30 [Momordica charantia])
HSP 1 Score: 370.2 bits (949), Expect = 1.1e-98
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query: 1 MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA 60
MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA
Sbjct: 1 MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA 60
Query: 61 LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVLALR 120
LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVLALR
Sbjct: 61 LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVLALR 120
Query: 121 AILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLR 180
AILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLR
Sbjct: 121 AILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLR 180
Query: 181 DLVADISTWQSPCSV 196
DLVADISTWQSPCSV
Sbjct: 181 DLVADISTWQSPCSV 195
BLAST of Moc06g00470 vs. NCBI nr
Match:
XP_022921424.1 (mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_022987135.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita maxima] >XP_023515464.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita pepo subsp. pepo] >KAG6589379.1 Mediator of RNA polymerase II transcription subunit 30, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023058.1 Mediator of RNA polymerase II transcription subunit 30 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 329.3 bits (843), Expect = 2.2e-86
Identity = 174/198 (87.88%), Postives = 187/198 (94.44%), Query Frame = 0
Query: 1 MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA--- 60
ME+KPT++L+LPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA
Sbjct: 1 MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60
Query: 61 TSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVL 120
TS L+IASPN PS HSTNGVVNGDASSESTNHH DTSSGGG+GSGGALEEARVRY NSVL
Sbjct: 61 TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120
Query: 121 ALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLID 180
ALRAILAAIP+SQ AKA+ESGTSGHASPADQSEIDKLEQHL NLRKEL+ KNLH+KLLID
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
Query: 181 QLRDLVADISTWQSPCSV 196
QLR+LVAD+STWQSPCSV
Sbjct: 181 QLRELVADVSTWQSPCSV 198
BLAST of Moc06g00470 vs. NCBI nr
Match:
XP_008464424.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo] >KAA0057767.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis melo var. makuwa] >TYJ98448.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis melo var. makuwa])
HSP 1 Score: 327.0 bits (837), Expect = 1.1e-85
Identity = 174/198 (87.88%), Postives = 186/198 (93.94%), Query Frame = 0
Query: 1 MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA 60
ME+K T++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT+A
Sbjct: 1 MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
Query: 61 ---LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVL 120
L+IASPNGPS HS NGVVNGDASSEST+HH D+SSGGG+GSGGALEEARVRY NSVL
Sbjct: 61 TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120
Query: 121 ALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLID 180
ALRAILAAIP+SQ AKAYESGTS HASPADQSEIDKLEQHL NLRKELV KNLH+KLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
Query: 181 QLRDLVADISTWQSPCSV 196
QLRDLVAD+STWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198
BLAST of Moc06g00470 vs. NCBI nr
Match:
XP_004138044.1 (mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus] >KGN63478.1 hypothetical protein Csa_013518 [Cucumis sativus])
HSP 1 Score: 325.9 bits (834), Expect = 2.4e-85
Identity = 173/198 (87.37%), Postives = 186/198 (93.94%), Query Frame = 0
Query: 1 MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA 60
ME+K T++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT+A
Sbjct: 1 MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
Query: 61 ---LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVL 120
L+IASP+GPS HS NGVVNGDASSEST+HH D+S GGG+GSGGALEEARVRY NSVL
Sbjct: 61 TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
Query: 121 ALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLID 180
ALRAILAAIP+SQ AKAYESGTSGHASPADQSEIDKLEQHL NLRKELV KNLH+KLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
Query: 181 QLRDLVADISTWQSPCSV 196
QLRDLVAD+STWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198
BLAST of Moc06g00470 vs. NCBI nr
Match:
XP_038879540.1 (mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida])
HSP 1 Score: 318.2 bits (814), Expect = 5.1e-83
Identity = 172/198 (86.87%), Postives = 184/198 (92.93%), Query Frame = 0
Query: 1 MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS---TA 60
ME+KPT++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS TA
Sbjct: 2 MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTVTTA 61
Query: 61 TSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVL 120
TS L+IASPNGPS HS NGVVNGDASSEST+HH D+SSGGG+GSGGALEEARVRY NSVL
Sbjct: 62 TSGLAIASPNGPSSHSVNGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 121
Query: 121 ALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLID 180
ALRAILAAIP+SQ A AYESGTSG SPADQSEIDKLEQHL +LRKELV KNLH+KLLID
Sbjct: 122 ALRAILAAIPNSQKATAYESGTSG--SPADQSEIDKLEQHLSSLRKELVVKNLHIKLLID 181
Query: 181 QLRDLVADISTWQSPCSV 196
QLRDLVAD+STWQSPCSV
Sbjct: 182 QLRDLVADVSTWQSPCSV 197
BLAST of Moc06g00470 vs. ExPASy Swiss-Prot
Match:
Q9FMV4 (Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana OX=3702 GN=MED30 PE=1 SV=1)
HSP 1 Score: 177.2 bits (448), Expect = 1.8e-43
Identity = 103/185 (55.68%), Postives = 138/185 (74.59%), Query Frame = 0
Query: 14 TTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSALSIASPNGPSPHS 73
TTQELA+EG K LEETIE+AFQI+ +MNDELCNP+LWS TS+T +SA + NG
Sbjct: 13 TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWS-TSATPSSAATTTGSNG----- 72
Query: 74 TNGVVNGDASS-ESTNHHADTSSGGGTGSGG--ALEEARVRYNNSVLALRAILAAIPSSQ 133
+ +V+ DA++ + T+HH++++ GGG G G L+EA +RY NSV +LRA+LAAIP+SQ
Sbjct: 73 -SALVSADAAAIDGTSHHSESAGGGGGGGSGNSVLDEASLRYKNSVTSLRAVLAAIPNSQ 132
Query: 134 NAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQ 193
AKA E +G SP + EI+KLE+ +LR E+ KN+H+K LID+LR+L+ADISTWQ
Sbjct: 133 KAKASEM-QNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIADISTWQ 189
Query: 194 SPCSV 196
SPCSV
Sbjct: 193 SPCSV 189
BLAST of Moc06g00470 vs. ExPASy TrEMBL
Match:
A0A6J1C121 (mediator of RNA polymerase II transcription subunit 30 OS=Momordica charantia OX=3673 GN=LOC111007061 PE=4 SV=1)
HSP 1 Score: 370.2 bits (949), Expect = 5.5e-99
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query: 1 MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA 60
MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA
Sbjct: 1 MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA 60
Query: 61 LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVLALR 120
LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVLALR
Sbjct: 61 LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVLALR 120
Query: 121 AILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLR 180
AILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLR
Sbjct: 121 AILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLR 180
Query: 181 DLVADISTWQSPCSV 196
DLVADISTWQSPCSV
Sbjct: 181 DLVADISTWQSPCSV 195
BLAST of Moc06g00470 vs. ExPASy TrEMBL
Match:
A0A6J1JFZ2 (mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita maxima OX=3661 GN=LOC111484777 PE=4 SV=1)
HSP 1 Score: 329.3 bits (843), Expect = 1.1e-86
Identity = 174/198 (87.88%), Postives = 187/198 (94.44%), Query Frame = 0
Query: 1 MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA--- 60
ME+KPT++L+LPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA
Sbjct: 1 MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60
Query: 61 TSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVL 120
TS L+IASPN PS HSTNGVVNGDASSESTNHH DTSSGGG+GSGGALEEARVRY NSVL
Sbjct: 61 TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120
Query: 121 ALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLID 180
ALRAILAAIP+SQ AKA+ESGTSGHASPADQSEIDKLEQHL NLRKEL+ KNLH+KLLID
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
Query: 181 QLRDLVADISTWQSPCSV 196
QLR+LVAD+STWQSPCSV
Sbjct: 181 QLRELVADVSTWQSPCSV 198
BLAST of Moc06g00470 vs. ExPASy TrEMBL
Match:
A0A6J1E0F5 (mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita moschata OX=3662 GN=LOC111429707 PE=4 SV=1)
HSP 1 Score: 329.3 bits (843), Expect = 1.1e-86
Identity = 174/198 (87.88%), Postives = 187/198 (94.44%), Query Frame = 0
Query: 1 MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA--- 60
ME+KPT++L+LPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA
Sbjct: 1 MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60
Query: 61 TSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVL 120
TS L+IASPN PS HSTNGVVNGDASSESTNHH DTSSGGG+GSGGALEEARVRY NSVL
Sbjct: 61 TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120
Query: 121 ALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLID 180
ALRAILAAIP+SQ AKA+ESGTSGHASPADQSEIDKLEQHL NLRKEL+ KNLH+KLLID
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
Query: 181 QLRDLVADISTWQSPCSV 196
QLR+LVAD+STWQSPCSV
Sbjct: 181 QLRELVADVSTWQSPCSV 198
BLAST of Moc06g00470 vs. ExPASy TrEMBL
Match:
A0A5A7USU3 (Mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00490 PE=4 SV=1)
HSP 1 Score: 327.0 bits (837), Expect = 5.3e-86
Identity = 174/198 (87.88%), Postives = 186/198 (93.94%), Query Frame = 0
Query: 1 MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA 60
ME+K T++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT+A
Sbjct: 1 MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
Query: 61 ---LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVL 120
L+IASPNGPS HS NGVVNGDASSEST+HH D+SSGGG+GSGGALEEARVRY NSVL
Sbjct: 61 TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120
Query: 121 ALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLID 180
ALRAILAAIP+SQ AKAYESGTS HASPADQSEIDKLEQHL NLRKELV KNLH+KLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
Query: 181 QLRDLVADISTWQSPCSV 196
QLRDLVAD+STWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198
BLAST of Moc06g00470 vs. ExPASy TrEMBL
Match:
A0A1S3CMZ7 (mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 GN=LOC103502315 PE=4 SV=1)
HSP 1 Score: 327.0 bits (837), Expect = 5.3e-86
Identity = 174/198 (87.88%), Postives = 186/198 (93.94%), Query Frame = 0
Query: 1 MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA 60
ME+K T++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT+A
Sbjct: 1 MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
Query: 61 ---LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVL 120
L+IASPNGPS HS NGVVNGDASSEST+HH D+SSGGG+GSGGALEEARVRY NSVL
Sbjct: 61 TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120
Query: 121 ALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLID 180
ALRAILAAIP+SQ AKAYESGTS HASPADQSEIDKLEQHL NLRKELV KNLH+KLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
Query: 181 QLRDLVADISTWQSPCSV 196
QLRDLVAD+STWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198
BLAST of Moc06g00470 vs. TAIR 10
Match:
AT5G63480.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 177.2 bits (448), Expect = 1.3e-44
Identity = 103/185 (55.68%), Postives = 138/185 (74.59%), Query Frame = 0
Query: 14 TTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSALSIASPNGPSPHS 73
TTQELA+EG K LEETIE+AFQI+ +MNDELCNP+LWS TS+T +SA + NG
Sbjct: 13 TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWS-TSATPSSAATTTGSNG----- 72
Query: 74 TNGVVNGDASS-ESTNHHADTSSGGGTGSGG--ALEEARVRYNNSVLALRAILAAIPSSQ 133
+ +V+ DA++ + T+HH++++ GGG G G L+EA +RY NSV +LRA+LAAIP+SQ
Sbjct: 73 -SALVSADAAAIDGTSHHSESAGGGGGGGSGNSVLDEASLRYKNSVTSLRAVLAAIPNSQ 132
Query: 134 NAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQ 193
AKA E +G SP + EI+KLE+ +LR E+ KN+H+K LID+LR+L+ADISTWQ
Sbjct: 133 KAKASEM-QNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIADISTWQ 189
Query: 194 SPCSV 196
SPCSV
Sbjct: 193 SPCSV 189
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022134927.1 | 1.1e-98 | 100.00 | mediator of RNA polymerase II transcription subunit 30 [Momordica charantia] | [more] |
XP_022921424.1 | 2.2e-86 | 87.88 | mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_... | [more] |
XP_008464424.1 | 1.1e-85 | 87.88 | PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]... | [more] |
XP_004138044.1 | 2.4e-85 | 87.37 | mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus] >KGN634... | [more] |
XP_038879540.1 | 5.1e-83 | 86.87 | mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
Q9FMV4 | 1.8e-43 | 55.68 | Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana O... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1C121 | 5.5e-99 | 100.00 | mediator of RNA polymerase II transcription subunit 30 OS=Momordica charantia OX... | [more] |
A0A6J1JFZ2 | 1.1e-86 | 87.88 | mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita maxima OX=36... | [more] |
A0A6J1E0F5 | 1.1e-86 | 87.88 | mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita moschata OX=... | [more] |
A0A5A7USU3 | 5.3e-86 | 87.88 | Mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo var. maku... | [more] |
A0A1S3CMZ7 | 5.3e-86 | 87.88 | mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 G... | [more] |
Match Name | E-value | Identity | Description | |
AT5G63480.1 | 1.3e-44 | 55.68 | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... | [more] |