Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAATTTTTTTTGGAAAGGGAGTAGCAACAAACATGGGCAAAACCTGGTGCGATGGGATAAGATCACTCATCCCATTGAGGATGGAGGCCTCGACATCTCCAAAATCAAGGAAAAGAATAAAGCTCTATTAGCAAAATGGATCTGGAGGTATCATACAGAAGAATTGGCCCTTTGGAGGCAAGTCATTGAAGCCAAATATGGGCCCCTCGATAGGCACAAAAGCTCCCTTCACCATTCTCTTGCTTCTGCCCATGGTCCTTGGAAATCTATATTAAAACAGAAGCAACATGTTCTGGACAGAAGCTGCTTCAAGATAGGCGATGGATCTAAAGTTCTCTTTTGGAAAGATGGATGGTTGGCCCCCAGTCCTCTATGTACTGTCTTCCCCCTCCTATTTGCTTTACACTCCTGCAAAGATGCCTTGGTGAAGGAGATGTGGTCGATAACTACAAAATCATGGGACCTCTGTTTTAGACGGAATCTCAAAGACGCAGAAATCCATGAATGCCTAGAGCTCCATCTCCTGCTGTCTCCCATCCACATCAATCGGGGATGTGATAGATTTGTCTGGAAATTGAAACCATCTGGCCTTTTCTCCGTCAACTCCCTTCTACAAGATCTACAAATCTCACAAACTACTCATGAAGAGACTATGCTCTACAAATCGATTTGGAAGGATCATTACCCAAAAAGGATCAAAGTCTTTTTATGGGAGATCAACAAGAATGCCCTTAATACCCATGACAAGCTTCAAAGAAGTTGCAGCATATGTGTCTTTCACCCCAATGGTGTGTGCTTTGTAAAAAACAAGAAGAATCCATGGGCCACATTTTTGTTTCCTGTGAATACACAGCAAAGCTATGGGCCTCTATTCTTTCATCCTTCGGTTGGCCTATAG
mRNA sequence
ATGAGGAATTTTTTTTGGAAAGGGAGTAGCAACAAACATGGGCAAAACCTGGTGCGATGGGATAAGATCACTCATCCCATTGAGGATGGAGGCCTCGACATCTCCAAAATCAAGGAAAAGAATAAAGCTCTATTAGCAAAATGGATCTGGAGGTATCATACAGAAGAATTGGCCCTTTGGAGGCAAGTCATTGAAGCCAAATATGGGCCCCTCGATAGGCACAAAAGCTCCCTTCACCATTCTCTTGCTTCTGCCCATGGTCCTTGGAAATCTATATTAAAACAGAAGCAACATGTTCTGGACAGAAGCTGCTTCAAGATAGGCGATGGATCTAAAGTTCTCTTTTGGAAAGATGGATGGTTGGCCCCCAGTCCTCTATGTACTGTCTTCCCCCTCCTATTTGCTTTACACTCCTGCAAAGATGCCTTGGTGAAGGAGATGTGGTCGATAACTACAAAATCATGGGACCTCTGTTTTAGACGGAATCTCAAAGACGCAGAAATCCATGAATGCCTAGAGCTCCATCTCCTGCTGTCTCCCATCCACATCAATCGGGGATGTGATAGATTTGTCTGGAAATTGAAACCATCTGGCCTTTTCTCCGTCAACTCCCTTCTACAAGATCTACAAATCTCACAAACTACTCATGAAGAGACTATGCTCTACAAATCGATTTGGAAGGATCATTACCCAAAAAGGATCAAAGTCTTTTTATGGGAGATCAACAAGAATGCCCTTAATACCCATGACAAGCTTCAAAGAAGTTGCAGCATATGTGTCTTTCACCCCAATGGTGTGTGCTTTGTAAAAAACAAGAAGAATCCATGGGCCACATTTTTGTTTCCTGTGAATACACAGCAAAGCTATGGGCCTCTATTCTTTCATCCTTCGGTTGGCCTATAG
Coding sequence (CDS)
ATGAGGAATTTTTTTTGGAAAGGGAGTAGCAACAAACATGGGCAAAACCTGGTGCGATGGGATAAGATCACTCATCCCATTGAGGATGGAGGCCTCGACATCTCCAAAATCAAGGAAAAGAATAAAGCTCTATTAGCAAAATGGATCTGGAGGTATCATACAGAAGAATTGGCCCTTTGGAGGCAAGTCATTGAAGCCAAATATGGGCCCCTCGATAGGCACAAAAGCTCCCTTCACCATTCTCTTGCTTCTGCCCATGGTCCTTGGAAATCTATATTAAAACAGAAGCAACATGTTCTGGACAGAAGCTGCTTCAAGATAGGCGATGGATCTAAAGTTCTCTTTTGGAAAGATGGATGGTTGGCCCCCAGTCCTCTATGTACTGTCTTCCCCCTCCTATTTGCTTTACACTCCTGCAAAGATGCCTTGGTGAAGGAGATGTGGTCGATAACTACAAAATCATGGGACCTCTGTTTTAGACGGAATCTCAAAGACGCAGAAATCCATGAATGCCTAGAGCTCCATCTCCTGCTGTCTCCCATCCACATCAATCGGGGATGTGATAGATTTGTCTGGAAATTGAAACCATCTGGCCTTTTCTCCGTCAACTCCCTTCTACAAGATCTACAAATCTCACAAACTACTCATGAAGAGACTATGCTCTACAAATCGATTTGGAAGGATCATTACCCAAAAAGGATCAAAGTCTTTTTATGGGAGATCAACAAGAATGCCCTTAATACCCATGACAAGCTTCAAAGAAGTTGCAGCATATGTGTCTTTCACCCCAATGGTGTGTGCTTTGTAAAAAACAAGAAGAATCCATGGGCCACATTTTTGTTTCCTGTGAATACACAGCAAAGCTATGGGCCTCTATTCTTTCATCCTTCGGTTGGCCTATAG
Protein sequence
MRNFFWKGSSNKHGQNLVRWDKITHPIEDGGLDISKIKEKNKALLAKWIWRYHTEELALWRQVIEAKYGPLDRHKSSLHHSLASAHGPWKSILKQKQHVLDRSCFKIGDGSKVLFWKDGWLAPSPLCTVFPLLFALHSCKDALVKEMWSITTKSWDLCFRRNLKDAEIHECLELHLLLSPIHINRGCDRFVWKLKPSGLFSVNSLLQDLQISQTTHEETMLYKSIWKDHYPKRIKVFLWEINKNALNTHDKLQRSCSICVFHPNGVCFVKNKKNPWATFLFPVNTQQSYGPLFFHPSVGL
Homology
BLAST of Moc06g00310 vs. NCBI nr
Match:
KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 188.3 bits (477), Expect = 9.3e-44
Identity = 94/282 (33.33%), Postives = 147/282 (52.13%), Query Frame = 0
Query: 2 RNFFWKGSSNKHGQNLVRWDKITHPIEDGGLDISKIKEKNKALLAKWIWRYHTEELALWR 61
RNF W G+SN H +L+RW+++ P E GGL I + N ALL KW+W++ TE+ LW+
Sbjct: 646 RNFLWNGTSNGHNISLIRWNQVVSPKEKGGLGIHSVHSTNFALLCKWLWKFLTEKEPLWK 705
Query: 62 QVIEAKYGPLDRHKSSLHHSLASAHGPWKSILKQKQHVLDRSCFKIGDGSKVLFWKDGWL 121
++I +KY + +S + PWK++ +K+ DG + FW D W
Sbjct: 706 RLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWLDNWN 765
Query: 122 APSPLCTVFPLLFALHSCKDALVKEMWSITTKSWDLCFRRNLKDAEIHECLELHLLLSPI 181
SPL V P LFAL + K VK++W+ + K W++ R L+D E + + L
Sbjct: 766 GNSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTP 825
Query: 182 HINRGCDRFVWKLKPSGLFSVNSLLQDLQ--ISQTTHEETMLYKSIWKDHYPKRIKVFLW 241
+RG + +WKL + +F S+ +DL + T+ LYK++WK +PK+ K F+W
Sbjct: 826 LPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIW 885
Query: 242 EINKNALNTHDKLQRSCSICVFHPNGVCFVKNKKNPWATFLF 282
+ +NT D+LQ+ PN C++ NK LF
Sbjct: 886 TLIHGCINTADRLQKRLPNWTLSPNW-CYMCNKSQEDINHLF 926
BLAST of Moc06g00310 vs. NCBI nr
Match:
KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 185.7 bits (470), Expect = 6.1e-43
Identity = 93/282 (32.98%), Postives = 146/282 (51.77%), Query Frame = 0
Query: 2 RNFFWKGSSNKHGQNLVRWDKITHPIEDGGLDISKIKEKNKALLAKWIWRYHTEELALWR 61
RNF W G+SN H +L+RW+++ P E GGL I + N ALL KW+W++ TE+ LW+
Sbjct: 552 RNFLWNGTSNGHNISLIRWNQVVSPKEKGGLGIHFVHSTNFALLCKWLWKFLTEKEPLWK 611
Query: 62 QVIEAKYGPLDRHKSSLHHSLASAHGPWKSILKQKQHVLDRSCFKIGDGSKVLFWKDGWL 121
++I +KY + +S + PWK++ +K+ DG + FW D W
Sbjct: 612 RLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWLDNWN 671
Query: 122 APSPLCTVFPLLFALHSCKDALVKEMWSITTKSWDLCFRRNLKDAEIHECLELHLLLSPI 181
SPL P LFAL + K VK++W+ + K W++ R L+D E + + L
Sbjct: 672 GNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTP 731
Query: 182 HINRGCDRFVWKLKPSGLFSVNSLLQDLQ--ISQTTHEETMLYKSIWKDHYPKRIKVFLW 241
+RG + +WKL + +F S+ +DL + T+ LYK++WK +PK+ K F+W
Sbjct: 732 LPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIW 791
Query: 242 EINKNALNTHDKLQRSCSICVFHPNGVCFVKNKKNPWATFLF 282
+ +NT D+LQ+ PN C++ NK LF
Sbjct: 792 TLIHGCINTADRLQKRLPNWTLSPNW-CYMCNKSQEDINHLF 832
BLAST of Moc06g00310 vs. NCBI nr
Match:
KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 184.5 bits (467), Expect = 1.3e-42
Identity = 95/283 (33.57%), Postives = 142/283 (50.18%), Query Frame = 0
Query: 2 RNFFWKGSSNKHGQNLVRWDKITHPIEDGGLDISKIKEKNKALLAKWIWRYHTEELALWR 61
RNF W G+SN H +L+RW++I P E GGL I + N ALL KW+W++ TE+ LW+
Sbjct: 754 RNFLWNGASNGHNISLIRWNQIVSPKEKGGLGIHSVNSTNFALLCKWLWKFLTEKDPLWK 813
Query: 62 QVIEAKYGPLDRHKSSLHHSLASAHGPWKSILKQKQHVLDRSCFKIGDGSKVLFWKDGWL 121
++I +KY H +S + PWK++ + +K+ DG + FW D W
Sbjct: 814 RLIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECISWFYKNISWKVNDGEDISFWLDNWN 873
Query: 122 APSPLCTVFPLLFALHSCKDALVKEMWSITTKSWDLCFRRNLKDAEIHECLELHLLLSPI 181
+PL P LFAL + K VKE W+ ++ W L R L+D E + + L
Sbjct: 874 GNAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLHINRPLRDHEENLWHNIKASLPTP 933
Query: 182 HINRGCDRFVWKLKPSGLF---SVNSLLQDLQISQTTHEETMLYKSIWKDHYPKRIKVFL 241
NRG + +W L + +F SV + + IS LYK++WK +PK+ K F+
Sbjct: 934 LPNRGHPKPLWNLNSNNIFDTASVKRAIAEAPISPANFHPN-LYKTLWKVEFPKKCKFFI 993
Query: 242 WEINKNALNTHDKLQRSCSICVFHPNGVCFVKNKKNPWATFLF 282
W + +NT D+LQ+ PN C++ NK LF
Sbjct: 994 WTLIHGCINTADRLQKRLPNWTLSPNW-CYMCNKSQEDINHLF 1034
BLAST of Moc06g00310 vs. NCBI nr
Match:
KAA0056839.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ99342.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 176.8 bits (447), Expect = 2.8e-40
Identity = 92/257 (35.80%), Postives = 138/257 (53.70%), Query Frame = 0
Query: 2 RNFFWKGSSNKHGQNLVRWDKITHPIEDGGLDISKIKEKNKALLAKWIWRYHTEELALWR 61
R+F W GS +K +L+ W+ T P E GGL ISK+K+ N+ALL KW+WRYH E +LW+
Sbjct: 381 RDFLWGGSEDKQNAHLINWNICTSPKELGGLGISKVKDTNQALLCKWLWRYHNESNSLWK 440
Query: 62 QVIEAKYGPLDRHKSSLHHSLASAHGPWKSILKQKQHVLDRSCFKIGDGSKVLFWKDGWL 121
+ I+AKY + + +SA+ PW +I K K + + DGS + FW W
Sbjct: 441 KCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWMANDGSSLSFWHSKWH 500
Query: 122 APSPLCTVFPLLFALHSCKDALVKEMWSITTKSWDLCFRRNLKDAEIHECLELHLLLSPI 181
PL FP L+AL + + A VKE+W + W++ RR L + E + + L I
Sbjct: 501 NNIPLSLQFPRLYALSNMQSATVKEIWDQGSDDWNMEPRRPLNEREQQTWDSIKMSLPRI 560
Query: 182 HINRGCDRFVWKLKPSGLFSVNS----LLQDLQISQTTHEETMLYKSIWKDHYPKRIKVF 241
H NRG + W S ++V S ++ I + T+ E L K +W+ H P++ K F
Sbjct: 561 HNNRGMCKPSWNPSDSKKYTVASAKDIAFKESSIPKETNWEKEL-KHLWRSHIPQKCKFF 620
Query: 242 LWEINKNALNTHDKLQR 255
+W + LNT DK+Q+
Sbjct: 621 IWTMVHQKLNTMDKIQK 636
BLAST of Moc06g00310 vs. NCBI nr
Match:
TQD93576.1 (hypothetical protein C1H46_020784 [Malus baccata])
HSP 1 Score: 176.4 bits (446), Expect = 3.7e-40
Identity = 91/276 (32.97%), Postives = 141/276 (51.09%), Query Frame = 0
Query: 1 MRNFFWKGSSNKHGQNLVRWDKITHPIEDGGLDISKIKEKNKALLAKWIWRYHTEELALW 60
M+ F W+G +LV+W+ + E+GGL + ++ +N+ALLAKW+WR+ E +LW
Sbjct: 117 MKGFLWEGVEEGKKNHLVKWEIVIKSKEEGGLGVGNLRNRNEALLAKWLWRFPKEPHSLW 176
Query: 61 RQVIEAKYGPLDRHKSSLHHSLASAHGPWKSILKQKQHVLDRSCFKIGDGSKVLFWKDGW 120
+VI +KYG + ++ S+ PWK I Q L F++G+G +V FW+DGW
Sbjct: 177 HKVIRSKYGLQNNGWNAFPPMRGSSRSPWKDISSGSQLFLHCCKFEVGNGERVRFWEDGW 236
Query: 121 LAPSPLCTVFPLLFALHSCKDALVKEM--WSITTKSWDLCFRRNLKDAEIHECLELHLLL 180
L PL FP LF L + + +S + SW+ FRRNL +AEI E L +
Sbjct: 237 LEGGPLKEQFPRLFLLSRMHNQNISSFADFSTNSLSWNFDFRRNLNEAEIEEAARLLQKV 296
Query: 181 SPIHINRG-CDRFVWKLKPSGLFSVNSLLQDLQISQTTHEETMLYKSIWKDHYPKRIKVF 240
+ +++ D WKL+ S LF+ S L + + Y IWK P ++K+
Sbjct: 297 EEVRLSQSRTDNRRWKLEASRLFTCKSYRSFLS-NNGIMQYFPPYSQIWKSKVPPKVKIL 356
Query: 241 LWEINKNALNTHDKLQRSCSICVFHPNGVCFVKNKK 274
+W + K LNT D++QR P+ K K+
Sbjct: 357 VWLVAKGKLNTCDQIQRRSHFICLSPHWCSLCKAKE 391
BLAST of Moc06g00310 vs. ExPASy Swiss-Prot
Match:
P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)
HSP 1 Score: 121.3 bits (303), Expect = 1.8e-26
Identity = 76/271 (28.04%), Postives = 122/271 (45.02%), Query Frame = 0
Query: 2 RNFFWKGSSNKHGQNLVRWDKITHPIEDGGLDISKIKEKNKALLAKWIWRYHTEELALWR 61
R F W ++ K Q+LV+W K+ P ++GGL + K N+AL++K WR E+ +LW
Sbjct: 71 RTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWT 130
Query: 62 QVIEAKYGPLDRHKSSLHHSLASAHGPWKSILKQKQHVLDRSCFKI-GDGSKVLFWKDGW 121
V++ KY + S S W+SI + V+ I GDG ++ FW D W
Sbjct: 131 LVLQKKYHVGEIRDSRWLIPKGSWSSTWRSIAIGLRDVVSHGVGWIPGDGQQIRFWTDRW 190
Query: 122 LAPSPLCTV----FPLLFALHSCKDALVKEMWSITTKSWDLCFRRNLKDAEIHECLELHL 181
++ PL + P C + K++W I + WD F + + LEL
Sbjct: 191 VSGKPLLELDNGERPT-----DCDTVVAKDLW-IPGRGWD--FAKIDPYTTNNTRLELRA 250
Query: 182 LLSPIHINRGCDRFVWKLKPSGLFSVNSLLQDLQISQTTHEE-TMLYKSIWKDHYPKRIK 241
++ + + DR WK G FSV S + L + + + +WK P+R+K
Sbjct: 251 VVLDL-VTGARDRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVK 310
Query: 242 VFLWEINKNALNTHDKLQRS-------CSIC 260
FLW + A+ T ++ R C +C
Sbjct: 311 TFLWLVGNQAVMTEEERHRRHLSASNVCQVC 332
BLAST of Moc06g00310 vs. ExPASy TrEMBL
Match:
A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)
HSP 1 Score: 188.3 bits (477), Expect = 4.5e-44
Identity = 94/282 (33.33%), Postives = 147/282 (52.13%), Query Frame = 0
Query: 2 RNFFWKGSSNKHGQNLVRWDKITHPIEDGGLDISKIKEKNKALLAKWIWRYHTEELALWR 61
RNF W G+SN H +L+RW+++ P E GGL I + N ALL KW+W++ TE+ LW+
Sbjct: 646 RNFLWNGTSNGHNISLIRWNQVVSPKEKGGLGIHSVHSTNFALLCKWLWKFLTEKEPLWK 705
Query: 62 QVIEAKYGPLDRHKSSLHHSLASAHGPWKSILKQKQHVLDRSCFKIGDGSKVLFWKDGWL 121
++I +KY + +S + PWK++ +K+ DG + FW D W
Sbjct: 706 RLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWLDNWN 765
Query: 122 APSPLCTVFPLLFALHSCKDALVKEMWSITTKSWDLCFRRNLKDAEIHECLELHLLLSPI 181
SPL V P LFAL + K VK++W+ + K W++ R L+D E + + L
Sbjct: 766 GNSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTP 825
Query: 182 HINRGCDRFVWKLKPSGLFSVNSLLQDLQ--ISQTTHEETMLYKSIWKDHYPKRIKVFLW 241
+RG + +WKL + +F S+ +DL + T+ LYK++WK +PK+ K F+W
Sbjct: 826 LPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIW 885
Query: 242 EINKNALNTHDKLQRSCSICVFHPNGVCFVKNKKNPWATFLF 282
+ +NT D+LQ+ PN C++ NK LF
Sbjct: 886 TLIHGCINTADRLQKRLPNWTLSPNW-CYMCNKSQEDINHLF 926
BLAST of Moc06g00310 vs. ExPASy TrEMBL
Match:
A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)
HSP 1 Score: 185.7 bits (470), Expect = 2.9e-43
Identity = 93/282 (32.98%), Postives = 146/282 (51.77%), Query Frame = 0
Query: 2 RNFFWKGSSNKHGQNLVRWDKITHPIEDGGLDISKIKEKNKALLAKWIWRYHTEELALWR 61
RNF W G+SN H +L+RW+++ P E GGL I + N ALL KW+W++ TE+ LW+
Sbjct: 552 RNFLWNGTSNGHNISLIRWNQVVSPKEKGGLGIHFVHSTNFALLCKWLWKFLTEKEPLWK 611
Query: 62 QVIEAKYGPLDRHKSSLHHSLASAHGPWKSILKQKQHVLDRSCFKIGDGSKVLFWKDGWL 121
++I +KY + +S + PWK++ +K+ DG + FW D W
Sbjct: 612 RLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWLDNWN 671
Query: 122 APSPLCTVFPLLFALHSCKDALVKEMWSITTKSWDLCFRRNLKDAEIHECLELHLLLSPI 181
SPL P LFAL + K VK++W+ + K W++ R L+D E + + L
Sbjct: 672 GNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTP 731
Query: 182 HINRGCDRFVWKLKPSGLFSVNSLLQDLQ--ISQTTHEETMLYKSIWKDHYPKRIKVFLW 241
+RG + +WKL + +F S+ +DL + T+ LYK++WK +PK+ K F+W
Sbjct: 732 LPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIW 791
Query: 242 EINKNALNTHDKLQRSCSICVFHPNGVCFVKNKKNPWATFLF 282
+ +NT D+LQ+ PN C++ NK LF
Sbjct: 792 TLIHGCINTADRLQKRLPNWTLSPNW-CYMCNKSQEDINHLF 832
BLAST of Moc06g00310 vs. ExPASy TrEMBL
Match:
A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)
HSP 1 Score: 184.5 bits (467), Expect = 6.5e-43
Identity = 95/283 (33.57%), Postives = 142/283 (50.18%), Query Frame = 0
Query: 2 RNFFWKGSSNKHGQNLVRWDKITHPIEDGGLDISKIKEKNKALLAKWIWRYHTEELALWR 61
RNF W G+SN H +L+RW++I P E GGL I + N ALL KW+W++ TE+ LW+
Sbjct: 754 RNFLWNGASNGHNISLIRWNQIVSPKEKGGLGIHSVNSTNFALLCKWLWKFLTEKDPLWK 813
Query: 62 QVIEAKYGPLDRHKSSLHHSLASAHGPWKSILKQKQHVLDRSCFKIGDGSKVLFWKDGWL 121
++I +KY H +S + PWK++ + +K+ DG + FW D W
Sbjct: 814 RLIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECISWFYKNISWKVNDGEDISFWLDNWN 873
Query: 122 APSPLCTVFPLLFALHSCKDALVKEMWSITTKSWDLCFRRNLKDAEIHECLELHLLLSPI 181
+PL P LFAL + K VKE W+ ++ W L R L+D E + + L
Sbjct: 874 GNAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLHINRPLRDHEENLWHNIKASLPTP 933
Query: 182 HINRGCDRFVWKLKPSGLF---SVNSLLQDLQISQTTHEETMLYKSIWKDHYPKRIKVFL 241
NRG + +W L + +F SV + + IS LYK++WK +PK+ K F+
Sbjct: 934 LPNRGHPKPLWNLNSNNIFDTASVKRAIAEAPISPANFHPN-LYKTLWKVEFPKKCKFFI 993
Query: 242 WEINKNALNTHDKLQRSCSICVFHPNGVCFVKNKKNPWATFLF 282
W + +NT D+LQ+ PN C++ NK LF
Sbjct: 994 WTLIHGCINTADRLQKRLPNWTLSPNW-CYMCNKSQEDINHLF 1034
BLAST of Moc06g00310 vs. ExPASy TrEMBL
Match:
A0A803P465 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 177.2 bits (448), Expect = 1.0e-40
Identity = 89/264 (33.71%), Postives = 141/264 (53.41%), Query Frame = 0
Query: 1 MRNFFWKGSSNKHGQNLVRWDKITHPIEDGGLDISKIKEKNKALLAKWIWRYHTEELALW 60
MR+F W+GS + G++LV WD++ P +GGL I +++ +NK+LL KW+WR+ E+ +LW
Sbjct: 1526 MRDFLWEGSESSGGEHLVAWDEVCRPRHEGGLGIGRLELRNKSLLMKWLWRFPLEQNSLW 1585
Query: 61 RQVIEAKYGPLDRHKSSLHHSLASAHGPWKSILKQKQHVLDRSCFKIGDGSKVLFWKDGW 120
+V+ ++YG D S S S GPW+ I L FK+G G ++ FW+D W
Sbjct: 1586 HRVVVSRYGRADNLWDSKKGSRLSPKGPWRDISDLYDEFLGLVHFKLGRGDRIRFWEDVW 1645
Query: 121 LAPSPLCTVFPLLFALHSCKDALVKEM---------WSITTKSWDLCFRRNLKDAEIHEC 180
+ PL + FP L + ++ +KE+ W +SW+ FRRNL D E+
Sbjct: 1646 IDDYPLVSAFPDLAVISEGRNTPIKELIVDEGLPGGW---VESWNFKFRRNLMDRELPSL 1705
Query: 181 LELHLLLSPIHI-NRGCDRFVWKLKPSGLFSVNSLLQDLQISQTTHEETMLYKSIWKDHY 240
+ L + + + + D +WK PSG+FS S +S + KS+WK
Sbjct: 1706 ISLMQKVEHVRVLSISEDSRIWKPDPSGVFSCKSAF-SWMVSNPSFRVLDWTKSLWKSCA 1765
Query: 241 PKRIKVFLWEINKNALNTHDKLQR 255
P ++KVF W + +N HDK+Q+
Sbjct: 1766 PSKVKVFGWLLALEKVNVHDKVQK 1785
BLAST of Moc06g00310 vs. ExPASy TrEMBL
Match:
A0A5A7UTI6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005580 PE=4 SV=1)
HSP 1 Score: 176.8 bits (447), Expect = 1.4e-40
Identity = 92/257 (35.80%), Postives = 138/257 (53.70%), Query Frame = 0
Query: 2 RNFFWKGSSNKHGQNLVRWDKITHPIEDGGLDISKIKEKNKALLAKWIWRYHTEELALWR 61
R+F W GS +K +L+ W+ T P E GGL ISK+K+ N+ALL KW+WRYH E +LW+
Sbjct: 381 RDFLWGGSEDKQNAHLINWNICTSPKELGGLGISKVKDTNQALLCKWLWRYHNESNSLWK 440
Query: 62 QVIEAKYGPLDRHKSSLHHSLASAHGPWKSILKQKQHVLDRSCFKIGDGSKVLFWKDGWL 121
+ I+AKY + + +SA+ PW +I K K + + DGS + FW W
Sbjct: 441 KCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWMANDGSSLSFWHSKWH 500
Query: 122 APSPLCTVFPLLFALHSCKDALVKEMWSITTKSWDLCFRRNLKDAEIHECLELHLLLSPI 181
PL FP L+AL + + A VKE+W + W++ RR L + E + + L I
Sbjct: 501 NNIPLSLQFPRLYALSNMQSATVKEIWDQGSDDWNMEPRRPLNEREQQTWDSIKMSLPRI 560
Query: 182 HINRGCDRFVWKLKPSGLFSVNS----LLQDLQISQTTHEETMLYKSIWKDHYPKRIKVF 241
H NRG + W S ++V S ++ I + T+ E L K +W+ H P++ K F
Sbjct: 561 HNNRGMCKPSWNPSDSKKYTVASAKDIAFKESSIPKETNWEKEL-KHLWRSHIPQKCKFF 620
Query: 242 LWEINKNALNTHDKLQR 255
+W + LNT DK+Q+
Sbjct: 621 IWTMVHQKLNTMDKIQK 636
BLAST of Moc06g00310 vs. TAIR 10
Match:
AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )
HSP 1 Score: 51.6 bits (122), Expect = 1.3e-06
Identity = 55/267 (20.60%), Postives = 86/267 (32.21%), Query Frame = 0
Query: 3 NFFWKGSSNKHGQNLVRWDKITHPIEDGGLDISKIKEKNKALLAKWIWRYHTEELALWRQ 62
+F W G + V W + P ++GGL I +KE NK + W
Sbjct: 101 SFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKG--------------SFW-- 160
Query: 63 VIEAKYGPLDRHKSSLHHSLASAHGPWKSILKQKQHVLDRSCFKIGDGSKVLFWKDGWLA 122
S+ + WK ILK + I +GS FW D W
Sbjct: 161 --------------SISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSK 220
Query: 123 PSPLCTVFPLLFALHSCKDALVKEMWSITTKSWDLCFRRNLKDAEIHECLELHLLLSPIH 182
L V C D + S+ + RR+ D L + +++ +
Sbjct: 221 IGRLIDV----TGHRGCIDMGITLHASVAEAVVNHRPRRHRHDT----LLRIEDVIAEVR 280
Query: 183 ---INRGCDRFVWKLKPSGLFSVNSLLQDLQISQTTHEETMLYKSIWKDHYPKRIKVFLW 242
+ G D WK + + ++ + YK +W H + V W
Sbjct: 281 HQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAW 329
Query: 243 EINKNALNTHDKL-------QRSCSIC 260
KN L T D++ SC +C
Sbjct: 341 IAIKNRLTTGDRMLSWNAGADSSCVLC 329
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0041397.1 | 9.3e-44 | 33.33 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0044556.1 | 6.1e-43 | 32.98 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0039950.1 | 1.3e-42 | 33.57 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... | [more] |
KAA0056839.1 | 2.8e-40 | 35.80 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ993... | [more] |
TQD93576.1 | 3.7e-40 | 32.97 | hypothetical protein C1H46_020784 [Malus baccata] | [more] |
Match Name | E-value | Identity | Description | |
P0C2F6 | 1.8e-26 | 28.04 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7TIB8 | 4.5e-44 | 33.33 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TR15 | 2.9e-43 | 32.98 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7T9I7 | 6.5e-43 | 33.57 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A803P465 | 1.0e-40 | 33.71 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A5A7UTI6 | 1.4e-40 | 35.80 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
Match Name | E-value | Identity | Description | |
AT3G24255.1 | 1.3e-06 | 20.60 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein | [more] |