Moc05g33910 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g33910
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionIntegrase catalytic domain-containing protein
Locationchr5: 25268204 .. 25268605 (+)
RNA-Seq ExpressionMoc05g33910
SyntenyMoc05g33910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGATTCCAGCGTCCCCATTTCTACACCGCCGTTGTCCTCTGAGACAATTCCGACTTCTACGTCTCTTCCTTCATCTGATAATGATTGTCCTCCGAATCTCTACTACCTTCATCATACTGATAACACAGGTCTTGTTCTTATGAATCAATTTCTCACTGAGGAGAATTATACGTCGTGGAGTCGATCGATGATAATCGCACTCAGGAACAAGTTAGGTTTTATTGATGGAACCATTCCGCGTCCCTCTGGAGATTTGCTCCCGATTCGGAACAATCACGTTGTTATTGTTTGGATCCTCAATTCGGTGTCCAAGGAAATTTCCATGAGCATCCTATTTTCTGAATCTGCTCGAGACATTTGGATCGACCTGAAGGAAAGATTTGAGAAGACCAATTGA

mRNA sequence

ATGACTGATTCCAGCGTCCCCATTTCTACACCGCCGTTGTCCTCTGAGACAATTCCGACTTCTACGTCTCTTCCTTCATCTGATAATGATTGTCCTCCGAATCTCTACTACCTTCATCATACTGATAACACAGGTCTTGTTCTTATGAATCAATTTCTCACTGAGGAGAATTATACGTCGTGGAGTCGATCGATGATAATCGCACTCAGGAACAAGTTAGGTTTTATTGATGGAACCATTCCGCGTCCCTCTGGAGATTTGCTCCCGATTCGGAACAATCACGTTGTTATTGTTTGGATCCTCAATTCGGTGTCCAAGGAAATTTCCATGAGCATCCTATTTTCTGAATCTGCTCGAGACATTTGGATCGACCTGAAGGAAAGATTTGAGAAGACCAATTGA

Coding sequence (CDS)

ATGACTGATTCCAGCGTCCCCATTTCTACACCGCCGTTGTCCTCTGAGACAATTCCGACTTCTACGTCTCTTCCTTCATCTGATAATGATTGTCCTCCGAATCTCTACTACCTTCATCATACTGATAACACAGGTCTTGTTCTTATGAATCAATTTCTCACTGAGGAGAATTATACGTCGTGGAGTCGATCGATGATAATCGCACTCAGGAACAAGTTAGGTTTTATTGATGGAACCATTCCGCGTCCCTCTGGAGATTTGCTCCCGATTCGGAACAATCACGTTGTTATTGTTTGGATCCTCAATTCGGTGTCCAAGGAAATTTCCATGAGCATCCTATTTTCTGAATCTGCTCGAGACATTTGGATCGACCTGAAGGAAAGATTTGAGAAGACCAATTGA

Protein sequence

MTDSSVPISTPPLSSETIPTSTSLPSSDNDCPPNLYYLHHTDNTGLVLMNQFLTEENYTSWSRSMIIALRNKLGFIDGTIPRPSGDLLPIRNNHVVIVWILNSVSKEISMSILFSESARDIWIDLKERFEKTN
Homology
BLAST of Moc05g33910 vs. NCBI nr
Match: XP_022156861.1 (uncharacterized protein LOC111023702 [Momordica charantia])

HSP 1 Score: 166.4 bits (420), Expect = 1.7e-37
Identity = 94/137 (68.61%), Postives = 103/137 (75.18%), Query Frame = 0

Query: 1   MTDSSVPISTPPLSSETIPTSTSLPSSDNDCPPNLYYLHHTDNTGLVLMNQFLTEENYTS 60
           + D   P    P SS + P S+S  S D     N YYLHHTDNTGLV +NQ LTE+NYTS
Sbjct: 8   LEDPLPPTGLSPESSSS-PVSSSTLSGDASV-LNPYYLHHTDNTGLVFVNQLLTEDNYTS 67

Query: 61  WSRSMIIAL--RNKLGFIDGTIPRPSGDLLP--IRNNHVVIVWILNSVSKEISMSILFSE 120
           WSRSM+I L  +NKL FIDG IPRPSGDLLP  I NNH+VI WILNSVSKEIS SILFSE
Sbjct: 68  WSRSMMIVLSVKNKLDFIDGFIPRPSGDLLPAWIDNNHIVIAWILNSVSKEISASILFSE 127

Query: 121 SARDIWIDLKERFEKTN 134
           SARDIWIDL ERFEK+N
Sbjct: 128 SARDIWIDLNERFEKSN 142

BLAST of Moc05g33910 vs. NCBI nr
Match: XP_022154608.1 (uncharacterized protein LOC111021831 [Momordica charantia])

HSP 1 Score: 163.7 bits (413), Expect = 1.1e-36
Identity = 91/127 (71.65%), Postives = 100/127 (78.74%), Query Frame = 0

Query: 11  PPLSSETIPTSTSLPSSDNDCPPNLYYLHHTDNTGLVLMNQFLTEENYTSWSRSMIIAL- 70
           P L   + P S+S   S  D   N YYLHHTDNT LVL+ Q LTEENY+SWSRSM+IAL 
Sbjct: 18  PVLDDSSSPNSSS-SVSGVDSVLNPYYLHHTDNTELVLVTQPLTEENYSSWSRSMLIALS 77

Query: 71  -RNKLGFIDGTIPRPSGDLLP--IRNNHVVIVWILNSVSKEISMSILFSESARDIWIDLK 130
            +NKLGFIDG+I RP G+LLP  I NNHVVI WILNSVSKEIS SILFSESARDIWIDLK
Sbjct: 78  IKNKLGFIDGSISRPIGELLPAWIHNNHVVIAWILNSVSKEISSSILFSESARDIWIDLK 137

Query: 131 ERFEKTN 134
           ERFEK+N
Sbjct: 138 ERFEKSN 143

BLAST of Moc05g33910 vs. NCBI nr
Match: XP_022152756.1 (uncharacterized protein LOC111020399 [Momordica charantia])

HSP 1 Score: 142.1 bits (357), Expect = 3.4e-30
Identity = 77/121 (63.64%), Postives = 94/121 (77.69%), Query Frame = 0

Query: 17  TIPTSTSLPSSDNDCPPNLYYLHHTDNTGLVLMNQFLTEENYTSWSRSMIIAL--RNKLG 76
           T  TST +     +   N Y+LHH+DNT LVL++  LT ENYTSWSRSM+IAL  +NK+G
Sbjct: 9   TASTSTIIALIAIEQYTNPYFLHHSDNTSLVLVSDPLTNENYTSWSRSMLIALTVKNKVG 68

Query: 77  FIDGTIPRPSGDLLP--IRNNHVVIVWILNSVSKEISMSILFSESARDIWIDLKERFEKT 134
           F+DG+I RP+GDLL   I  N+VVI WILNS+SKEIS SILFS+SAR+IW+DLKERFEK 
Sbjct: 69  FVDGSIVRPTGDLLHSWIICNNVVISWILNSLSKEISASILFSDSAREIWLDLKERFEKQ 128

BLAST of Moc05g33910 vs. NCBI nr
Match: XP_031736906.1 (uncharacterized protein LOC105434586 isoform X3 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 3.4e-30
Identity = 74/124 (59.68%), Postives = 90/124 (72.58%), Query Frame = 0

Query: 14  SSETIPTSTSLPSSDNDCPPNLYYLHHTDNTGLVLMNQFLTEENYTSWSRSMIIAL--RN 73
           +S    TS       N    N Y+LHH DNT LVL+ + LTEENY SWSR+M I L  +N
Sbjct: 20  NSNQSDTSAQTSFDQNQGYLNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKN 79

Query: 74  KLGFIDGTIPRPSGDLLP--IRNNHVVIVWILNSVSKEISMSILFSESARDIWIDLKERF 133
           K+GF+DGTI RP+GDLLP  IRNN++VI WILNSVSK IS +ILFS+ AR IW++LKERF
Sbjct: 80  KIGFVDGTIARPTGDLLPVWIRNNNIVISWILNSVSKPISANILFSDLARTIWVELKERF 139

BLAST of Moc05g33910 vs. NCBI nr
Match: XP_031736905.1 (uncharacterized protein LOC105434586 isoform X2 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-29
Identity = 79/147 (53.74%), Postives = 102/147 (69.39%), Query Frame = 0

Query: 4   SSVPISTPPLS-SETIPTSTSLPSSD------------NDCPPNLYYLHHTDNTGLVLMN 63
           S+  ++TP ++ S T P +   P+S+            N    N Y+LHH DNT LVL+ 
Sbjct: 37  SAARMTTPTINVSHTSPKNQENPNSNQSDTSAQTSFDQNQGYLNPYFLHHNDNTNLVLVT 96

Query: 64  QFLTEENYTSWSRSMIIAL--RNKLGFIDGTIPRPSGDLLP--IRNNHVVIVWILNSVSK 123
           + LTEENY SWSR+M I L  +NK+GF+DGTI RP+GDLLP  IRNN++VI WILNSVSK
Sbjct: 97  EQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWIRNNNIVISWILNSVSK 156

Query: 124 EISMSILFSESARDIWIDLKERFEKTN 134
            IS +ILFS+ AR IW++LKERF+K N
Sbjct: 157 PISANILFSDLARTIWVELKERFQKKN 183

BLAST of Moc05g33910 vs. ExPASy TrEMBL
Match: A0A6J1DW89 (uncharacterized protein LOC111023702 OS=Momordica charantia OX=3673 GN=LOC111023702 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 8.2e-38
Identity = 94/137 (68.61%), Postives = 103/137 (75.18%), Query Frame = 0

Query: 1   MTDSSVPISTPPLSSETIPTSTSLPSSDNDCPPNLYYLHHTDNTGLVLMNQFLTEENYTS 60
           + D   P    P SS + P S+S  S D     N YYLHHTDNTGLV +NQ LTE+NYTS
Sbjct: 8   LEDPLPPTGLSPESSSS-PVSSSTLSGDASV-LNPYYLHHTDNTGLVFVNQLLTEDNYTS 67

Query: 61  WSRSMIIAL--RNKLGFIDGTIPRPSGDLLP--IRNNHVVIVWILNSVSKEISMSILFSE 120
           WSRSM+I L  +NKL FIDG IPRPSGDLLP  I NNH+VI WILNSVSKEIS SILFSE
Sbjct: 68  WSRSMMIVLSVKNKLDFIDGFIPRPSGDLLPAWIDNNHIVIAWILNSVSKEISASILFSE 127

Query: 121 SARDIWIDLKERFEKTN 134
           SARDIWIDL ERFEK+N
Sbjct: 128 SARDIWIDLNERFEKSN 142

BLAST of Moc05g33910 vs. ExPASy TrEMBL
Match: A0A6J1DKR8 (uncharacterized protein LOC111021831 OS=Momordica charantia OX=3673 GN=LOC111021831 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 5.3e-37
Identity = 91/127 (71.65%), Postives = 100/127 (78.74%), Query Frame = 0

Query: 11  PPLSSETIPTSTSLPSSDNDCPPNLYYLHHTDNTGLVLMNQFLTEENYTSWSRSMIIAL- 70
           P L   + P S+S   S  D   N YYLHHTDNT LVL+ Q LTEENY+SWSRSM+IAL 
Sbjct: 18  PVLDDSSSPNSSS-SVSGVDSVLNPYYLHHTDNTELVLVTQPLTEENYSSWSRSMLIALS 77

Query: 71  -RNKLGFIDGTIPRPSGDLLP--IRNNHVVIVWILNSVSKEISMSILFSESARDIWIDLK 130
            +NKLGFIDG+I RP G+LLP  I NNHVVI WILNSVSKEIS SILFSESARDIWIDLK
Sbjct: 78  IKNKLGFIDGSISRPIGELLPAWIHNNHVVIAWILNSVSKEISSSILFSESARDIWIDLK 137

Query: 131 ERFEKTN 134
           ERFEK+N
Sbjct: 138 ERFEKSN 143

BLAST of Moc05g33910 vs. ExPASy TrEMBL
Match: A0A6J1DIP8 (uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020399 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.6e-30
Identity = 77/121 (63.64%), Postives = 94/121 (77.69%), Query Frame = 0

Query: 17  TIPTSTSLPSSDNDCPPNLYYLHHTDNTGLVLMNQFLTEENYTSWSRSMIIAL--RNKLG 76
           T  TST +     +   N Y+LHH+DNT LVL++  LT ENYTSWSRSM+IAL  +NK+G
Sbjct: 9   TASTSTIIALIAIEQYTNPYFLHHSDNTSLVLVSDPLTNENYTSWSRSMLIALTVKNKVG 68

Query: 77  FIDGTIPRPSGDLLP--IRNNHVVIVWILNSVSKEISMSILFSESARDIWIDLKERFEKT 134
           F+DG+I RP+GDLL   I  N+VVI WILNS+SKEIS SILFS+SAR+IW+DLKERFEK 
Sbjct: 69  FVDGSIVRPTGDLLHSWIICNNVVISWILNSLSKEISASILFSDSAREIWLDLKERFEKQ 128

BLAST of Moc05g33910 vs. ExPASy TrEMBL
Match: A0A6J1CMF8 (uncharacterized protein LOC111012468 OS=Momordica charantia OX=3673 GN=LOC111012468 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.2e-27
Identity = 75/145 (51.72%), Postives = 98/145 (67.59%), Query Frame = 0

Query: 1   MTDSSVPISTPPLSSETIPTSTSLPSSDNDCP--------PNLYYLHHTDNTGLVLMNQF 60
           MTD + PI    + SE +    S  S+ +            N YYLHH+DNT LVL++  
Sbjct: 1   MTDET-PILPSGIPSEQVHAGVSSSSTTHGVATTSILENYSNPYYLHHSDNTSLVLVSDL 60

Query: 61  LTEENYTSWSRSMIIAL--RNKLGFIDGTIPRPSGDLLPIRN--NHVVIVWILNSVSKEI 120
           L E NYTSWSRSMIIAL  +NK+GF+DG+I RPSG  +      N+VVI W+LNS+SKEI
Sbjct: 61  LNENNYTSWSRSMIIALTVKNKIGFVDGSISRPSGAQINSWKICNNVVIAWLLNSLSKEI 120

Query: 121 SMSILFSESARDIWIDLKERFEKTN 134
           S S+LFS+SARDIW+DL+ER+++ N
Sbjct: 121 SASVLFSDSARDIWLDLQERYQRKN 144

BLAST of Moc05g33910 vs. ExPASy TrEMBL
Match: A0A7J0FKC9 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein OS=Actinidia rufa OX=165716 GN=Acr_13g0000100 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 5.0e-27
Identity = 70/119 (58.82%), Postives = 91/119 (76.47%), Query Frame = 0

Query: 22  TSLPSSDNDCPPNLYYLHHTDNTGLVLMNQFLTEENYTSWSRSMIIAL--RNKLGFIDGT 81
           +S+     D P + Y+LHH+D   LVL++Q LT +NY SW+R+MIIAL  +NKLGFIDG+
Sbjct: 257 SSINKLATDDPSSPYFLHHSDGPELVLVSQSLTGDNYASWNRAMIIALSVKNKLGFIDGS 316

Query: 82  IPRPSG---DLLP--IRNNHVVIVWILNSVSKEISMSILFSESARDIWIDLKERFEKTN 134
           I +P G   +LL   IRNN+VVI WILNSVSKEIS SI+FS SA +IWIDLK+RF+++N
Sbjct: 317 ITKPEGNDTNLLNSWIRNNNVVISWILNSVSKEISASIIFSASANEIWIDLKDRFQQSN 375

BLAST of Moc05g33910 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 7.1e-10
Identity = 41/126 (32.54%), Postives = 71/126 (56.35%), Query Frame = 0

Query: 15  SETIPTSTSLPSSDNDCPPNLYYL----HHTDNTGLVLMNQFLTEENYTSWSRSMIIALR 74
           +ETI + +  P+SD D P   YYL    HH  +  +  +++   E+NY +W       LR
Sbjct: 2   AETIKSVS--PTSDPDSP---YYLPPDIHHPSDFSIQKLSK--DEDNYVAWKIRFRSFLR 61

Query: 75  --NKLGFIDGTIPRPSGDLLPI-----RNNHVVIVWILNSVSKEISMSILFSESARDIWI 130
              K GFIDGT+P+P     P+     + N +V+ W++NS++ ++  S++++E+A  +W 
Sbjct: 62  VTKKFGFIDGTLPKPD-PFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWE 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156861.11.7e-3768.61uncharacterized protein LOC111023702 [Momordica charantia][more]
XP_022154608.11.1e-3671.65uncharacterized protein LOC111021831 [Momordica charantia][more]
XP_022152756.13.4e-3063.64uncharacterized protein LOC111020399 [Momordica charantia][more]
XP_031736906.13.4e-3059.68uncharacterized protein LOC105434586 isoform X3 [Cucumis sativus][more]
XP_031736905.11.3e-2953.74uncharacterized protein LOC105434586 isoform X2 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DW898.2e-3868.61uncharacterized protein LOC111023702 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1DKR85.3e-3771.65uncharacterized protein LOC111021831 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A6J1DIP81.6e-3063.64uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A6J1CMF82.2e-2751.72uncharacterized protein LOC111012468 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A7J0FKC95.0e-2758.82Haloacid dehalogenase-like hydrolase (HAD) superfamily protein OS=Actinidia rufa... [more]
Match NameE-valueIdentityDescription
AT1G21280.17.1e-1032.54CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029472Retrotransposon Copia-like, N-terminalPFAMPF14244Retrotran_gag_3coord: 39..83
e-value: 2.0E-16
score: 59.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availablePANTHERPTHR37610:SF55SUBFAMILY NOT NAMEDcoord: 30..131
NoneNo IPR availablePANTHERPTHR37610FAMILY NOT NAMEDcoord: 30..131

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g33910.1Moc05g33910.1mRNA