Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGATTCCAGCGTCCCCATTTCTACACCGCCGTTGTCCTCTGAGACAATTCCGACTTCTACGTCTCTTCCTTCATCTGATAATGATTGTCCTCCGAATCTCTACTACCTTCATCATACTGATAACACAGGTCTTGTTCTTATGAATCAATTTCTCACTGAGGAGAATTATACGTCGTGGAGTCGATCGATGATAATCGCACTCAGGAACAAGTTAGGTTTTATTGATGGAACCATTCCGCGTCCCTCTGGAGATTTGCTCCCGATTCGGAACAATCACGTTGTTATTGTTTGGATCCTCAATTCGGTGTCCAAGGAAATTTCCATGAGCATCCTATTTTCTGAATCTGCTCGAGACATTTGGATCGACCTGAAGGAAAGATTTGAGAAGACCAATTGA
mRNA sequence
ATGACTGATTCCAGCGTCCCCATTTCTACACCGCCGTTGTCCTCTGAGACAATTCCGACTTCTACGTCTCTTCCTTCATCTGATAATGATTGTCCTCCGAATCTCTACTACCTTCATCATACTGATAACACAGGTCTTGTTCTTATGAATCAATTTCTCACTGAGGAGAATTATACGTCGTGGAGTCGATCGATGATAATCGCACTCAGGAACAAGTTAGGTTTTATTGATGGAACCATTCCGCGTCCCTCTGGAGATTTGCTCCCGATTCGGAACAATCACGTTGTTATTGTTTGGATCCTCAATTCGGTGTCCAAGGAAATTTCCATGAGCATCCTATTTTCTGAATCTGCTCGAGACATTTGGATCGACCTGAAGGAAAGATTTGAGAAGACCAATTGA
Coding sequence (CDS)
ATGACTGATTCCAGCGTCCCCATTTCTACACCGCCGTTGTCCTCTGAGACAATTCCGACTTCTACGTCTCTTCCTTCATCTGATAATGATTGTCCTCCGAATCTCTACTACCTTCATCATACTGATAACACAGGTCTTGTTCTTATGAATCAATTTCTCACTGAGGAGAATTATACGTCGTGGAGTCGATCGATGATAATCGCACTCAGGAACAAGTTAGGTTTTATTGATGGAACCATTCCGCGTCCCTCTGGAGATTTGCTCCCGATTCGGAACAATCACGTTGTTATTGTTTGGATCCTCAATTCGGTGTCCAAGGAAATTTCCATGAGCATCCTATTTTCTGAATCTGCTCGAGACATTTGGATCGACCTGAAGGAAAGATTTGAGAAGACCAATTGA
Protein sequence
MTDSSVPISTPPLSSETIPTSTSLPSSDNDCPPNLYYLHHTDNTGLVLMNQFLTEENYTSWSRSMIIALRNKLGFIDGTIPRPSGDLLPIRNNHVVIVWILNSVSKEISMSILFSESARDIWIDLKERFEKTN
Homology
BLAST of Moc05g33910 vs. NCBI nr
Match:
XP_022156861.1 (uncharacterized protein LOC111023702 [Momordica charantia])
HSP 1 Score: 166.4 bits (420), Expect = 1.7e-37
Identity = 94/137 (68.61%), Postives = 103/137 (75.18%), Query Frame = 0
Query: 1 MTDSSVPISTPPLSSETIPTSTSLPSSDNDCPPNLYYLHHTDNTGLVLMNQFLTEENYTS 60
+ D P P SS + P S+S S D N YYLHHTDNTGLV +NQ LTE+NYTS
Sbjct: 8 LEDPLPPTGLSPESSSS-PVSSSTLSGDASV-LNPYYLHHTDNTGLVFVNQLLTEDNYTS 67
Query: 61 WSRSMIIAL--RNKLGFIDGTIPRPSGDLLP--IRNNHVVIVWILNSVSKEISMSILFSE 120
WSRSM+I L +NKL FIDG IPRPSGDLLP I NNH+VI WILNSVSKEIS SILFSE
Sbjct: 68 WSRSMMIVLSVKNKLDFIDGFIPRPSGDLLPAWIDNNHIVIAWILNSVSKEISASILFSE 127
Query: 121 SARDIWIDLKERFEKTN 134
SARDIWIDL ERFEK+N
Sbjct: 128 SARDIWIDLNERFEKSN 142
BLAST of Moc05g33910 vs. NCBI nr
Match:
XP_022154608.1 (uncharacterized protein LOC111021831 [Momordica charantia])
HSP 1 Score: 163.7 bits (413), Expect = 1.1e-36
Identity = 91/127 (71.65%), Postives = 100/127 (78.74%), Query Frame = 0
Query: 11 PPLSSETIPTSTSLPSSDNDCPPNLYYLHHTDNTGLVLMNQFLTEENYTSWSRSMIIAL- 70
P L + P S+S S D N YYLHHTDNT LVL+ Q LTEENY+SWSRSM+IAL
Sbjct: 18 PVLDDSSSPNSSS-SVSGVDSVLNPYYLHHTDNTELVLVTQPLTEENYSSWSRSMLIALS 77
Query: 71 -RNKLGFIDGTIPRPSGDLLP--IRNNHVVIVWILNSVSKEISMSILFSESARDIWIDLK 130
+NKLGFIDG+I RP G+LLP I NNHVVI WILNSVSKEIS SILFSESARDIWIDLK
Sbjct: 78 IKNKLGFIDGSISRPIGELLPAWIHNNHVVIAWILNSVSKEISSSILFSESARDIWIDLK 137
Query: 131 ERFEKTN 134
ERFEK+N
Sbjct: 138 ERFEKSN 143
BLAST of Moc05g33910 vs. NCBI nr
Match:
XP_022152756.1 (uncharacterized protein LOC111020399 [Momordica charantia])
HSP 1 Score: 142.1 bits (357), Expect = 3.4e-30
Identity = 77/121 (63.64%), Postives = 94/121 (77.69%), Query Frame = 0
Query: 17 TIPTSTSLPSSDNDCPPNLYYLHHTDNTGLVLMNQFLTEENYTSWSRSMIIAL--RNKLG 76
T TST + + N Y+LHH+DNT LVL++ LT ENYTSWSRSM+IAL +NK+G
Sbjct: 9 TASTSTIIALIAIEQYTNPYFLHHSDNTSLVLVSDPLTNENYTSWSRSMLIALTVKNKVG 68
Query: 77 FIDGTIPRPSGDLLP--IRNNHVVIVWILNSVSKEISMSILFSESARDIWIDLKERFEKT 134
F+DG+I RP+GDLL I N+VVI WILNS+SKEIS SILFS+SAR+IW+DLKERFEK
Sbjct: 69 FVDGSIVRPTGDLLHSWIICNNVVISWILNSLSKEISASILFSDSAREIWLDLKERFEKQ 128
BLAST of Moc05g33910 vs. NCBI nr
Match:
XP_031736906.1 (uncharacterized protein LOC105434586 isoform X3 [Cucumis sativus])
HSP 1 Score: 142.1 bits (357), Expect = 3.4e-30
Identity = 74/124 (59.68%), Postives = 90/124 (72.58%), Query Frame = 0
Query: 14 SSETIPTSTSLPSSDNDCPPNLYYLHHTDNTGLVLMNQFLTEENYTSWSRSMIIAL--RN 73
+S TS N N Y+LHH DNT LVL+ + LTEENY SWSR+M I L +N
Sbjct: 20 NSNQSDTSAQTSFDQNQGYLNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKN 79
Query: 74 KLGFIDGTIPRPSGDLLP--IRNNHVVIVWILNSVSKEISMSILFSESARDIWIDLKERF 133
K+GF+DGTI RP+GDLLP IRNN++VI WILNSVSK IS +ILFS+ AR IW++LKERF
Sbjct: 80 KIGFVDGTIARPTGDLLPVWIRNNNIVISWILNSVSKPISANILFSDLARTIWVELKERF 139
BLAST of Moc05g33910 vs. NCBI nr
Match:
XP_031736905.1 (uncharacterized protein LOC105434586 isoform X2 [Cucumis sativus])
HSP 1 Score: 140.2 bits (352), Expect = 1.3e-29
Identity = 79/147 (53.74%), Postives = 102/147 (69.39%), Query Frame = 0
Query: 4 SSVPISTPPLS-SETIPTSTSLPSSD------------NDCPPNLYYLHHTDNTGLVLMN 63
S+ ++TP ++ S T P + P+S+ N N Y+LHH DNT LVL+
Sbjct: 37 SAARMTTPTINVSHTSPKNQENPNSNQSDTSAQTSFDQNQGYLNPYFLHHNDNTNLVLVT 96
Query: 64 QFLTEENYTSWSRSMIIAL--RNKLGFIDGTIPRPSGDLLP--IRNNHVVIVWILNSVSK 123
+ LTEENY SWSR+M I L +NK+GF+DGTI RP+GDLLP IRNN++VI WILNSVSK
Sbjct: 97 EQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWIRNNNIVISWILNSVSK 156
Query: 124 EISMSILFSESARDIWIDLKERFEKTN 134
IS +ILFS+ AR IW++LKERF+K N
Sbjct: 157 PISANILFSDLARTIWVELKERFQKKN 183
BLAST of Moc05g33910 vs. ExPASy TrEMBL
Match:
A0A6J1DW89 (uncharacterized protein LOC111023702 OS=Momordica charantia OX=3673 GN=LOC111023702 PE=4 SV=1)
HSP 1 Score: 166.4 bits (420), Expect = 8.2e-38
Identity = 94/137 (68.61%), Postives = 103/137 (75.18%), Query Frame = 0
Query: 1 MTDSSVPISTPPLSSETIPTSTSLPSSDNDCPPNLYYLHHTDNTGLVLMNQFLTEENYTS 60
+ D P P SS + P S+S S D N YYLHHTDNTGLV +NQ LTE+NYTS
Sbjct: 8 LEDPLPPTGLSPESSSS-PVSSSTLSGDASV-LNPYYLHHTDNTGLVFVNQLLTEDNYTS 67
Query: 61 WSRSMIIAL--RNKLGFIDGTIPRPSGDLLP--IRNNHVVIVWILNSVSKEISMSILFSE 120
WSRSM+I L +NKL FIDG IPRPSGDLLP I NNH+VI WILNSVSKEIS SILFSE
Sbjct: 68 WSRSMMIVLSVKNKLDFIDGFIPRPSGDLLPAWIDNNHIVIAWILNSVSKEISASILFSE 127
Query: 121 SARDIWIDLKERFEKTN 134
SARDIWIDL ERFEK+N
Sbjct: 128 SARDIWIDLNERFEKSN 142
BLAST of Moc05g33910 vs. ExPASy TrEMBL
Match:
A0A6J1DKR8 (uncharacterized protein LOC111021831 OS=Momordica charantia OX=3673 GN=LOC111021831 PE=4 SV=1)
HSP 1 Score: 163.7 bits (413), Expect = 5.3e-37
Identity = 91/127 (71.65%), Postives = 100/127 (78.74%), Query Frame = 0
Query: 11 PPLSSETIPTSTSLPSSDNDCPPNLYYLHHTDNTGLVLMNQFLTEENYTSWSRSMIIAL- 70
P L + P S+S S D N YYLHHTDNT LVL+ Q LTEENY+SWSRSM+IAL
Sbjct: 18 PVLDDSSSPNSSS-SVSGVDSVLNPYYLHHTDNTELVLVTQPLTEENYSSWSRSMLIALS 77
Query: 71 -RNKLGFIDGTIPRPSGDLLP--IRNNHVVIVWILNSVSKEISMSILFSESARDIWIDLK 130
+NKLGFIDG+I RP G+LLP I NNHVVI WILNSVSKEIS SILFSESARDIWIDLK
Sbjct: 78 IKNKLGFIDGSISRPIGELLPAWIHNNHVVIAWILNSVSKEISSSILFSESARDIWIDLK 137
Query: 131 ERFEKTN 134
ERFEK+N
Sbjct: 138 ERFEKSN 143
BLAST of Moc05g33910 vs. ExPASy TrEMBL
Match:
A0A6J1DIP8 (uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020399 PE=4 SV=1)
HSP 1 Score: 142.1 bits (357), Expect = 1.6e-30
Identity = 77/121 (63.64%), Postives = 94/121 (77.69%), Query Frame = 0
Query: 17 TIPTSTSLPSSDNDCPPNLYYLHHTDNTGLVLMNQFLTEENYTSWSRSMIIAL--RNKLG 76
T TST + + N Y+LHH+DNT LVL++ LT ENYTSWSRSM+IAL +NK+G
Sbjct: 9 TASTSTIIALIAIEQYTNPYFLHHSDNTSLVLVSDPLTNENYTSWSRSMLIALTVKNKVG 68
Query: 77 FIDGTIPRPSGDLLP--IRNNHVVIVWILNSVSKEISMSILFSESARDIWIDLKERFEKT 134
F+DG+I RP+GDLL I N+VVI WILNS+SKEIS SILFS+SAR+IW+DLKERFEK
Sbjct: 69 FVDGSIVRPTGDLLHSWIICNNVVISWILNSLSKEISASILFSDSAREIWLDLKERFEKQ 128
BLAST of Moc05g33910 vs. ExPASy TrEMBL
Match:
A0A6J1CMF8 (uncharacterized protein LOC111012468 OS=Momordica charantia OX=3673 GN=LOC111012468 PE=4 SV=1)
HSP 1 Score: 131.7 bits (330), Expect = 2.2e-27
Identity = 75/145 (51.72%), Postives = 98/145 (67.59%), Query Frame = 0
Query: 1 MTDSSVPISTPPLSSETIPTSTSLPSSDNDCP--------PNLYYLHHTDNTGLVLMNQF 60
MTD + PI + SE + S S+ + N YYLHH+DNT LVL++
Sbjct: 1 MTDET-PILPSGIPSEQVHAGVSSSSTTHGVATTSILENYSNPYYLHHSDNTSLVLVSDL 60
Query: 61 LTEENYTSWSRSMIIAL--RNKLGFIDGTIPRPSGDLLPIRN--NHVVIVWILNSVSKEI 120
L E NYTSWSRSMIIAL +NK+GF+DG+I RPSG + N+VVI W+LNS+SKEI
Sbjct: 61 LNENNYTSWSRSMIIALTVKNKIGFVDGSISRPSGAQINSWKICNNVVIAWLLNSLSKEI 120
Query: 121 SMSILFSESARDIWIDLKERFEKTN 134
S S+LFS+SARDIW+DL+ER+++ N
Sbjct: 121 SASVLFSDSARDIWLDLQERYQRKN 144
BLAST of Moc05g33910 vs. ExPASy TrEMBL
Match:
A0A7J0FKC9 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein OS=Actinidia rufa OX=165716 GN=Acr_13g0000100 PE=4 SV=1)
HSP 1 Score: 130.6 bits (327), Expect = 5.0e-27
Identity = 70/119 (58.82%), Postives = 91/119 (76.47%), Query Frame = 0
Query: 22 TSLPSSDNDCPPNLYYLHHTDNTGLVLMNQFLTEENYTSWSRSMIIAL--RNKLGFIDGT 81
+S+ D P + Y+LHH+D LVL++Q LT +NY SW+R+MIIAL +NKLGFIDG+
Sbjct: 257 SSINKLATDDPSSPYFLHHSDGPELVLVSQSLTGDNYASWNRAMIIALSVKNKLGFIDGS 316
Query: 82 IPRPSG---DLLP--IRNNHVVIVWILNSVSKEISMSILFSESARDIWIDLKERFEKTN 134
I +P G +LL IRNN+VVI WILNSVSKEIS SI+FS SA +IWIDLK+RF+++N
Sbjct: 317 ITKPEGNDTNLLNSWIRNNNVVISWILNSVSKEISASIIFSASANEIWIDLKDRFQQSN 375
BLAST of Moc05g33910 vs. TAIR 10
Match:
AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 61.2 bits (147), Expect = 7.1e-10
Identity = 41/126 (32.54%), Postives = 71/126 (56.35%), Query Frame = 0
Query: 15 SETIPTSTSLPSSDNDCPPNLYYL----HHTDNTGLVLMNQFLTEENYTSWSRSMIIALR 74
+ETI + + P+SD D P YYL HH + + +++ E+NY +W LR
Sbjct: 2 AETIKSVS--PTSDPDSP---YYLPPDIHHPSDFSIQKLSK--DEDNYVAWKIRFRSFLR 61
Query: 75 --NKLGFIDGTIPRPSGDLLPI-----RNNHVVIVWILNSVSKEISMSILFSESARDIWI 130
K GFIDGT+P+P P+ + N +V+ W++NS++ ++ S++++E+A +W
Sbjct: 62 VTKKFGFIDGTLPKPD-PFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWE 119
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022156861.1 | 1.7e-37 | 68.61 | uncharacterized protein LOC111023702 [Momordica charantia] | [more] |
XP_022154608.1 | 1.1e-36 | 71.65 | uncharacterized protein LOC111021831 [Momordica charantia] | [more] |
XP_022152756.1 | 3.4e-30 | 63.64 | uncharacterized protein LOC111020399 [Momordica charantia] | [more] |
XP_031736906.1 | 3.4e-30 | 59.68 | uncharacterized protein LOC105434586 isoform X3 [Cucumis sativus] | [more] |
XP_031736905.1 | 1.3e-29 | 53.74 | uncharacterized protein LOC105434586 isoform X2 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DW89 | 8.2e-38 | 68.61 | uncharacterized protein LOC111023702 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
A0A6J1DKR8 | 5.3e-37 | 71.65 | uncharacterized protein LOC111021831 OS=Momordica charantia OX=3673 GN=LOC111021... | [more] |
A0A6J1DIP8 | 1.6e-30 | 63.64 | uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020... | [more] |
A0A6J1CMF8 | 2.2e-27 | 51.72 | uncharacterized protein LOC111012468 OS=Momordica charantia OX=3673 GN=LOC111012... | [more] |
A0A7J0FKC9 | 5.0e-27 | 58.82 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein OS=Actinidia rufa... | [more] |
Match Name | E-value | Identity | Description | |
AT1G21280.1 | 7.1e-10 | 32.54 | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha... | [more] |