Moc05g32510 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g32510
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr5: 24320284 .. 24320595 (-)
RNA-Seq ExpressionMoc05g32510
SyntenyMoc05g32510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGGCTGTATTTGTTTTGGAGGTCGCAGCAAGAAGCAGAAGAGAAATCAAATTGCCGGTGGCGGTGACAAAGGCGGCCGTAAATTCAGACCGCCGCGAGGATACGGAGGTGGAACAACCGGCGGCGGAATGGGTGCTGGAAATGGTAATTTGACTGTTCTAACTGATGATGGTGGCGTCGCTTTGGCCGCCACGGTTGCTTTTACGATTGCTGCAGCTGCTGTCGCCGATAGTGGCGAATGCGGCGGCAGCTGTGGTGGCGGAGAATGCGGCGGCGGCGGCGGCTGTGGTGGTGGCTGTGGGGGCTGA

mRNA sequence

ATGGTGGGCTGTATTTGTTTTGGAGGTCGCAGCAAGAAGCAGAAGAGAAATCAAATTGCCGGTGGCGGTGACAAAGGCGGCCGTAAATTCAGACCGCCGCGAGGATACGGAGGTGGAACAACCGGCGGCGGAATGGGTGCTGGAAATGGTAATTTGACTGTTCTAACTGATGATGGTGGCGTCGCTTTGGCCGCCACGGTTGCTTTTACGATTGCTGCAGCTGCTGTCGCCGATAGTGGCGAATGCGGCGGCAGCTGTGGTGGCGGAGAATGCGGCGGCGGCGGCGGCTGTGGTGGTGGCTGTGGGGGCTGA

Coding sequence (CDS)

ATGGTGGGCTGTATTTGTTTTGGAGGTCGCAGCAAGAAGCAGAAGAGAAATCAAATTGCCGGTGGCGGTGACAAAGGCGGCCGTAAATTCAGACCGCCGCGAGGATACGGAGGTGGAACAACCGGCGGCGGAATGGGTGCTGGAAATGGTAATTTGACTGTTCTAACTGATGATGGTGGCGTCGCTTTGGCCGCCACGGTTGCTTTTACGATTGCTGCAGCTGCTGTCGCCGATAGTGGCGAATGCGGCGGCAGCTGTGGTGGCGGAGAATGCGGCGGCGGCGGCGGCTGTGGTGGTGGCTGTGGGGGCTGA

Protein sequence

MVGCICFGGRSKKQKRNQIAGGGDKGGRKFRPPRGYGGGTTGGGMGAGNGNLTVLTDDGGVALAATVAFTIAAAAVADSGECGGSCGGGECGGGGGCGGGCGG
Homology
BLAST of Moc05g32510 vs. NCBI nr
Match: XP_023528737.1 (loricrin-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 109.0 bits (271), Expect = 2.5e-20
Identity = 73/104 (70.19%), Postives = 79/104 (75.96%), Query Frame = 0

Query: 2   VGCICFGGRSKKQKRNQIAGGGDKGGRKFRPPRGYGGGTTGGGMGAGNGNLTVLTD-DGG 61
           + CICF G  +K+K NQ    GDKG RKFRPPRGY GGT  GG   GNGNLTVLTD DGG
Sbjct: 1   MSCICFRGPKEKKKSNQ--AHGDKGARKFRPPRGYTGGTAAGGSTTGNGNLTVLTDHDGG 60

Query: 62  VALAATVAFTIAAAAVADSGECGGSCGGGECGGGGGC-GGGCGG 104
           V LA+T  F +AAAAV D+GE GGSCGGGECGG GGC GGGCGG
Sbjct: 61  VVLASTFGFAVAAAAVVDAGEHGGSCGGGECGGAGGCGGGGCGG 102

BLAST of Moc05g32510 vs. NCBI nr
Match: KAG6580518.1 (hypothetical protein SDJN03_20520, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-14
Identity = 61/100 (61.00%), Postives = 68/100 (68.00%), Query Frame = 0

Query: 2   VGCICFGGRSKKQKRNQIAGGGDKGGRKFRPPRGYGGGTTGGGMGAGNGNLTVLTD-DGG 61
           + CICF  R  K+++N     GD G RKFRPPRGY GGT       GNGNLTVLTD DGG
Sbjct: 55  MSCICF--RGPKEEKNSNQAHGDNGARKFRPPRGYSGGTAAAASTPGNGNLTVLTDHDGG 114

Query: 62  VALAATVAFTIAAAAVADSGECGGSCGGGECGGGGGCGGG 101
           V LA+T  F +AAAAV D+GE GG CGG    GGGGCGGG
Sbjct: 115 VVLASTFGFAVAAAAVVDAGEHGGECGGAGGCGGGGCGGG 152

BLAST of Moc05g32510 vs. ExPASy TrEMBL
Match: A0A0A0LDL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733910 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.1e-18
Identity = 64/94 (68.09%), Postives = 70/94 (74.47%), Query Frame = 0

Query: 4  CICFG-GRSKKQKRNQIAGGGDKGGRKFRPPRGYGGGTTGGGMGAGNGNLTVLTD--DGG 63
          CICFG G+ KK+  N     G KGGRKFRPPRG+GG T  GG GAGNGNL VLTD  DGG
Sbjct: 5  CICFGAGQKKKKSNNNNQTDGHKGGRKFRPPRGHGGRTGVGGSGAGNGNLAVLTDHHDGG 64

Query: 64 VALAATVAFTIAAAAVADSGECGGSCGGGECGGG 95
          VA+ AT+ F +AAAAV D  E GGSCGGGECGGG
Sbjct: 65 VAMVATLGFAVAAAAVVDVAEHGGSCGGGECGGG 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023528737.12.5e-2070.19loricrin-like [Cucurbita pepo subsp. pepo][more]
KAG6580518.11.6e-1461.00hypothetical protein SDJN03_20520, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LDL81.1e-1868.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733910 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..43

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g32510.1Moc05g32510.1mRNA