Moc05g29380 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g29380
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr5: 21726806 .. 21728890 (+)
RNA-Seq Expression	Moc05g29380
Synteny	Moc05g29380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTCCAGAACCTAAACAACTCAGTTGAGAGCTCCGTGACCGGTGAAAGGGAAGGTCCACTAATGATTGATAGGCCATTCCCACCCTATCTGTCTCTTGATCTGAACGACGTAATAAAGGAACTAGCAGCCATCAAGACTGAACGAGATGAGGATCAAAGAAAATCGAACTAACTGTGATAAGCAGGTTCATTTTACCATAAAAGCAGAAAGAAGGAAAGAAAACTGATGAAAGTTCGCCCAATGGAAGCGAGTGACTCCCAAGAAATATAGGCCTGCCATCCACACCTGAATAAATGAAGTTTTCCGAAAAAACCTGCTAGTGAAGGAAGACCTCCTAAGAATAAGAGACATAAGGCTAAAGAGAGAGCCAAAAAAGGATCTTTTGTGTATAATCCTGCATAATCTCGAATGTTATCCGTTCCGGTACGTAGACCAAATGATACAAGGTGTTGGGTGGTGGGTTTTCGATGGATACAGCTTTGATTGCTTTTCACCAGTTTATATAATGAATATTTGTTTATACCTCATTGACATTGATAATTGTAGACAGACTAAAGGACCAGACCTTGAGCTGAGAACAAGATCGAAAGCGCAACTTCTCATTCGAAGCATGAAAGTGGTCAGGTCACAACAAGCCGGAAGAGAGAGGAGTGGCCTTCTCGAAGGTTGGGGGTTGCTCGAAATCTGTCAAATACGCTCTGGGAGAGTCTTCCATGATTCTAAAATGGGGTCGAGCTCAATCAAAGTGGAAGGAGAATGCTGCTTTAAAAAGAAACTAATAAAGATGCCCTGACCGTGGTGGACGCATGCACTCGCAACACAAAAGTCAAGCGAAAGATGCCCCTTTTCAGATAGCAGATCTATATTAACTTGTTTACCCTGCAGCATCCATCATGGGGGTATCATCAGTAGCAGGGATATCGCCAGTCGATTCAGACGCTGTTCCAGGTAAAGCACCACCCGCAGAGGTATTCGGGACAGATAGGATTTCATCTAGGGATAGACAGAAGCAACTGACATAGTGACCGAGGAGTCAATAAGACACTTTACTGTAAAGGACGTATTTATTGTTCAGCTTCCTCTGAAAACATATCCTGAAAGTTCTAGAATCATCGGGAACGACAACTCGACACTGGAAGCTTTGATGAGACTCTTTTTGGCTCGTGCACAGATTTACGTTCAATAATCCCAGGGGCTTTCACTTCGAGGGAGAACTTTGTAGCCTAGTCTTCTAGCAAACTTTAACTCCTCACTATAATACACTCCAATAAATTTACCGGTTGGAAAGATTACGTCGACTTTTCTAAAGAAGGGGGGCGTGCTAGCTTACGAGACCCTTCGAAAGACGAGACTCAGATCGGGGTCGGCTTTCATTGTTGCAACCTTCGCATTTCCTGCTGAGATCCCAAGTCTCCAAGTGGGCCCTCTTGGCCCCATGGTTATGGAACCGAATCCATTAGTATGGAACATTTTCTCGGAAGCTGTAGCTTTGCGGACGAAGCCGAGGGCTAGGTTAGGTTGATCTTTTGGAGTGATCTTCAAGAAGGGTCGTCGCTCCCTATTGTTGCTCCCACTGGAGGGTTCAGAGAGGCATTTGATCCAGGAGCCTCTTCGCTGGTACTTCCTTTCTGGGGCAGTCAGCTGGCTGCTTCTTGGCCACGCCCGTTCTCTTTCAGACCTTTCAACCAGGAGAGCGGCCTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTAGAGATCAATCTTGTGGCAATTTCCTCTTCAAATCACATCAAGATGAACTTTAAAGGAGTAGGGAAGTCGTATCCTGCCGAGCAAATTACTGAAGTTGGTTCTGAGTCGGCTGGTGATGGTCGGTAAACTCTTTTTGCAGGCAGCCTATCAAACAAATCAGATCACGGTAGTAGATCCATAATCAAAAAAGTGTTTGTGATTGTTCCAGAAGAAATGAAACAAAAGATACGGTAGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAGATGGTCAGAACTCAGAAGGCGACGGAAGATCGTTCGAAAGAGAAGAGAACGAAAGGGATCAGATTCAATAA

mRNA sequence

ATGGAATTCCAGAACCTAAACAACTCAGTTGAGAGCTCCGTGACCGGTGAAAGGGAAGGTCCACTAATGATTGATAGGCCATTCCCACCCTATCTGTCTCTTGATCTGAACGACACTAAAGGACCAGACCTTGAGCTGAGAACAAGATCGAAAGCGCAACTTCTCATTCGAAGCATGAAAGTGGTCAGGTCACAACAAGCCGGAAGAGAGAGGAGTGGCCTTCTCGAAGCATCCATCATGGGGGTATCATCAGTAGCAGGGATATCGCCAGTCGATTCAGACGCTGTTCCAGGTAAAGCACCACCCGCAGAGCTTCCTCTGAAAACATATCCTGAAAGTTCTAGAATCATCGGGAACGACAACTCGACACTGGAAGCTTTGATGAGACTCTTTTTGGCTCGTGCACAGATTTACATTACGTCGACTTTTCTAAAGAAGGGGGGCGTGCTAGCTTACGAGACCCTTCGAAAGACGAGACTCAGATCGGGGTCGGCTTTCATTGTTGCAACCTTCGCATTTCCTGCTGAGATCCCAAGTCTCCAAGTGGGCCCTCTTGGCCCCATGGTTATGGAACCGAATCCATTAGTATGGAACATTTTCTCGGAAGCTGTAGCTTTGCGGACGAAGCCGAGGGCTAGCTGGCTGCTTCTTGGCCACGCCCGTTCTCTTTCAGACCTTTCAACCAGGAGAGCGGCCTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTAGAGATCAATCTTGTGGCAATTTCCTCTTCAAATCACATCAAGATGAACTTTAAAGGAGTAGGGAAGTCGTATCCTGCCGAGCAAATTACTGAAGTTGGTTCTGAGTCGGCTGGTGATGGTCGAAGAAATGAAACAAAAGATACGGTAGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAGATGGTCAGAACTCAGAAGGCGACGGAAGATCGTTCGAAAGAGAAGAGAACGAAAGGGATCAGATTCAATAA

Coding sequence (CDS)

ATGGAATTCCAGAACCTAAACAACTCAGTTGAGAGCTCCGTGACCGGTGAAAGGGAAGGTCCACTAATGATTGATAGGCCATTCCCACCCTATCTGTCTCTTGATCTGAACGACACTAAAGGACCAGACCTTGAGCTGAGAACAAGATCGAAAGCGCAACTTCTCATTCGAAGCATGAAAGTGGTCAGGTCACAACAAGCCGGAAGAGAGAGGAGTGGCCTTCTCGAAGCATCCATCATGGGGGTATCATCAGTAGCAGGGATATCGCCAGTCGATTCAGACGCTGTTCCAGGTAAAGCACCACCCGCAGAGCTTCCTCTGAAAACATATCCTGAAAGTTCTAGAATCATCGGGAACGACAACTCGACACTGGAAGCTTTGATGAGACTCTTTTTGGCTCGTGCACAGATTTACATTACGTCGACTTTTCTAAAGAAGGGGGGCGTGCTAGCTTACGAGACCCTTCGAAAGACGAGACTCAGATCGGGGTCGGCTTTCATTGTTGCAACCTTCGCATTTCCTGCTGAGATCCCAAGTCTCCAAGTGGGCCCTCTTGGCCCCATGGTTATGGAACCGAATCCATTAGTATGGAACATTTTCTCGGAAGCTGTAGCTTTGCGGACGAAGCCGAGGGCTAGCTGGCTGCTTCTTGGCCACGCCCGTTCTCTTTCAGACCTTTCAACCAGGAGAGCGGCCTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTAGAGATCAATCTTGTGGCAATTTCCTCTTCAAATCACATCAAGATGAACTTTAAAGGAGTAGGGAAGTCGTATCCTGCCGAGCAAATTACTGAAGTTGGTTCTGAGTCGGCTGGTGATGGTCGAAGAAATGAAACAAAAGATACGGTAGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAGATGGTCAGAACTCAGAAGGCGACGGAAGATCGTTCGAAAGAGAAGAGAACGAAAGGGATCAGATTCAATAA

Protein sequence

MEFQNLNNSVESSVTGEREGPLMIDRPFPPYLSLDLNDTKGPDLELRTRSKAQLLIRSMKVVRSQQAGRERSGLLEASIMGVSSVAGISPVDSDAVPGKAPPAELPLKTYPESSRIIGNDNSTLEALMRLFLARAQIYITSTFLKKGGVLAYETLRKTRLRSGSAFIVATFAFPAEIPSLQVGPLGPMVMEPNPLVWNIFSEAVALRTKPRASWLLLGHARSLSDLSTRRAASASSRRIQFHRVEINLVAISSSNHIKMNFKGVGKSYPAEQITEVGSESAGDGRRNETKDTVELGQLLYEVYPMLDGQNSEGDGRSFEREENERDQIQ

Homology

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BLAST of Moc05g29380 vs. ExPASy TrEMBL
Match: A0A164V6Z2 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022733 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.0e-04
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 1  MEFQNLNNSVESSVTGEREGPLMIDRPFPPYLSLD 36
          MEF+NLNNSVESS TG REGP MIDR  PPY SLD
Sbjct: 18 MEFKNLNNSVESSATGSREGPPMIDR--PPYPSLD 50

The following BLAST results are available for this feature:

BLAST of Moc05g29380 vs.


Match Name	E-value	Identity	Description

BLAST of Moc05g29380 vs.


Match Name	E-value	Identity	Description

BLAST of Moc05g29380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A164V6Z2	5.0e-04	80.00	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022733 ...	[more]

BLAST of Moc05g29380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 305..329
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 313..329

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g29380.1	Moc05g29380.1	mRNA