Moc05g29250 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g29250
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionPentatricopeptide repeat-containing protein
Locationchr5: 21704600 .. 21705968 (+)
RNA-Seq ExpressionMoc05g29250
SyntenyMoc05g29250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACAGAAAAATCTTACTCCTCAGTGGATGATTCGTGATTTTGCCCCTTTTTCTAGTTGTAAGGTCTTGTCCACCTTAGCGTTACAATGAAAAAAGAACTTTCTCATCATTGCATCCTTTTTCTAGAGCTAGGCTATCTTTCTTCAAGTGAGAGATCGGATCGTGAAACCCTCTCGCATGCAAATATTTCGATCGGGAAAGTCTTCAATATAAAACTAGAGACTACTCTTATACTTTATATATTCTATATAAAGAGTCTCTAGACTAGTAGTCATATCTAGACAATAGACTACTGTGGGTTAGTGATATCGAGGCCGTTTCTTGTCCCGTCCCCCCGCCCCGGCTACCCTTTTCTGGATTTGTGACGGGAGGCAGGAAACTCCGTCTATACCACAGCTTGAGACGAGACCCGGGAGGCCATCCAAAGGCTTTGAAATAGGAATAGTCTGGAATCTTTTGAAAAAGCTTTTGATGAGGGGAGTCACCAGCAATAGTCGACGATTGCAATCAGTAATTAATATGCACAGCTTTATGAAACGCTTCCTGGACATGAATTGGCTCCACGATTCCTTGGTGACGCCGGCCGAGTCCTGATCCGGGGAGTCCGTGGGGCTGCAGGTACTATGGATCCTCTGACTCCCAATCGGGTTGCCTTCCCAGGTCTCGCCGGTGTTGCCTGTAGGTCGTGCTGTGCCTTGAGATGGCTGTCTCCTGTCCCCGGGAGAAGGTTCTGGTAAGCTCGTCAGGGGAAGTTGGTGACCTGATGACAGGGGAGCCGGCGACCGAAGCCCCGGCGAAGTTCAAACCTCGCCAGAGAGAGAGAAGCGAATTGAAAACCGGTCTCAAATCCCTTCGTAATCGAAGGTGAAAGCGTAGTAAGACCAACCATCACTAACATAGGGCTAACGTGATAAATCCTGCCAAATATAGGCGGGCCGTACTTGTGATGGTTCCCAAGGATCCAATATGACCACTTAGGTCTACGTTGCCACGATATTGTTCTATGGAAGCGGGCGGGCAGTTAGAAGTTCGGCCCTTCCTAACTAAGAATAAGATCGAGAGGAGCCCGAACCAAACCAAGAACGAAAACGGATTCGATTCGACGATCTCGATGAAGCCAATGGGTTAGCAATGATCCTCTCAATTGACTAGTTCAGTTTCGGGACTTCTCCTGAAGAATGACCAATGGAACCGACCGTATCAAAGTAGTGACCCGAACTTTTTGGCTGAAGTCGACCTGCCACAGGCGCATCCGATGGATTTCGCGGATACTTTGCGCTTAAAGGCTTCTATCATTCTGGAGTCGTATTTGGATTCCGTAAGGAGACCTCTGACTATAATTGAGAATACGGTGGGCCTCTGCTAG

mRNA sequence

ATGAAACAGAAAAATCTTACTCCTCAGTGGATGATTCGTGATTTTGCCCCTTTTTCTAGTTGTAAGCTTTATGAAACGCTTCCTGGACATGAATTGGCTCCACGATTCCTTGGTGACGCCGGCCGAGTCCTGATCCGGGGAGTCCGTGGGGCTGCAGGTACTATGGATCCTCTGACTCCCAATCGGGTTGCCTTCCCAGGTCTCGCCGGTGTTGCCTGTAGGTCGTGCTGTGCCTTGAGATGGCTGTCTCCTGTCCCCGGGAGAAGGTTCTGTTCAGTTTCGGGACTTCTCCTGAAGAATGACCAATGGAACCGACCGTATCAAAGTAGTGACCCGAACTTTTTGGCTGAAGTCGACCTGCCACAGGCGCATCCGATGGATTTCGCGGATACTTTGCGCTTAAAGGCTTCTATCATTCTGGAGTCGTATTTGGATTCCGTAAGGAGACCTCTGACTATAATTGAGAATACGGTGGGCCTCTGCTAG

Coding sequence (CDS)

ATGAAACAGAAAAATCTTACTCCTCAGTGGATGATTCGTGATTTTGCCCCTTTTTCTAGTTGTAAGCTTTATGAAACGCTTCCTGGACATGAATTGGCTCCACGATTCCTTGGTGACGCCGGCCGAGTCCTGATCCGGGGAGTCCGTGGGGCTGCAGGTACTATGGATCCTCTGACTCCCAATCGGGTTGCCTTCCCAGGTCTCGCCGGTGTTGCCTGTAGGTCGTGCTGTGCCTTGAGATGGCTGTCTCCTGTCCCCGGGAGAAGGTTCTGTTCAGTTTCGGGACTTCTCCTGAAGAATGACCAATGGAACCGACCGTATCAAAGTAGTGACCCGAACTTTTTGGCTGAAGTCGACCTGCCACAGGCGCATCCGATGGATTTCGCGGATACTTTGCGCTTAAAGGCTTCTATCATTCTGGAGTCGTATTTGGATTCCGTAAGGAGACCTCTGACTATAATTGAGAATACGGTGGGCCTCTGCTAG

Protein sequence

MKQKNLTPQWMIRDFAPFSSCKLYETLPGHELAPRFLGDAGRVLIRGVRGAAGTMDPLTPNRVAFPGLAGVACRSCCALRWLSPVPGRRFCSVSGLLLKNDQWNRPYQSSDPNFLAEVDLPQAHPMDFADTLRLKASIILESYLDSVRRPLTIIENTVGLC
Homology
[Close]
BLAST of Moc05g29250 vs. NCBI nr
Match: KAF3773510.1 (hypothetical protein EJ110_NYTH47861 [Nymphaea thermarum])

HSP 1 Score: 62.4 bits (150), Expect = 4.1e-06
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 112 PNFLAEVDLPQAHPMDFADTLRLKASIILES-YLDSVRR 150
           PNFLAEVDLPQAHPMD ADTLRLKAS+ILES + DS+ R
Sbjct: 11  PNFLAEVDLPQAHPMDSADTLRLKASLILESAFKDSLTR 49

[Close]
BLAST of Moc05g29250 vs. NCBI nr
Match: GFA29215.1 (pentatricopeptide repeat-containing protein [Tanacetum cinerariifolium])

HSP 1 Score: 61.2 bits (147), Expect = 9.2e-06
Identity = 34/68 (50.00%), Postives = 37/68 (54.41%), Query Frame = 0 

Query: 8   PQWMIRDFAPFSSCKLYETLPGHELAPRFLGDAGRVLIRGVRGAAGTMDPLTPNRVAFPG 67
           P WM  +  P   C ++       L P F  D        VR AA TMDPLTPN VAFPG
Sbjct: 111 PLWM--EVVPNQICSVFSVAEKRSLPPAFKNDEYE-----VREAASTMDPLTPNWVAFPG 170

Query: 68  LAGVACRS 76
           LAGVACRS
Sbjct: 171 LAGVACRS 171

[Close]
BLAST of Moc05g29250 vs. NCBI nr
Match: PWA52990.1 (pentatricopeptide repeat-containing protein [Artemisia annua] >PWA80991.1 pentatricopeptide repeat-containing protein [Artemisia annua])

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-04
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 48 VRGAAGTMDPLTPNRVAFPGLAGVACRS 76
          VR AAGTMDPLTPNRVAFPGLAGVACRS
Sbjct: 65 VREAAGTMDPLTPNRVAFPGLAGVACRS 92

[Close]
BLAST of Moc05g29250 vs. ExPASy TrEMBL
Match: A0A2U1LVG7 (Pentatricopeptide repeat-containing protein OS=Artemisia annua OX=35608 GN=CTI12_AA190810 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.9e-05
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 48 VRGAAGTMDPLTPNRVAFPGLAGVACRS 76
          VR AAGTMDPLTPNRVAFPGLAGVACRS
Sbjct: 65 VREAAGTMDPLTPNRVAFPGLAGVACRS 92

[Close]
BLAST of Moc05g29250 vs. ExPASy TrEMBL
Match: A0A2N9FVS8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22598 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.5e-05
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 48  VRGAAGTMDPLTPNRVAFPGLAGVACRS 76
           VRGAAGTMDPLTPNRVA PGLAGVACR+
Sbjct: 972 VRGAAGTMDPLTPNRVALPGLAGVACRA 999

The following BLAST results are available for this feature:
BLAST of Moc05g29250 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF3773510.14.1e-0682.05hypothetical protein EJ110_NYTH47861 [Nymphaea thermarum][more]
GFA29215.19.2e-0650.00pentatricopeptide repeat-containing protein [Tanacetum cinerariifolium][more]
PWA52990.11.0e-0496.43pentatricopeptide repeat-containing protein [Artemisia annua] >PWA80991.1 pentat... [more]
BLAST of Moc05g29250 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc05g29250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2U1LVG74.9e-0596.43Pentatricopeptide repeat-containing protein OS=Artemisia annua OX=35608 GN=CTI12... [more]
A0A2N9FVS86.5e-0592.86Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22598 PE=4 SV=1[more]
BLAST of Moc05g29250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g29250.1Moc05g29250.1mRNA