Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGTCGCAAGAATCGATATTGACAAGTTCGATGGTAAAGGTGATTTTGAGTTATGGAAGGTCAAAATTAAAGCACTTCTGGGACAACATAAAGCATCCAAGGCCATTCTAGATCAAGCAAAGTTATTGGAGACAATGACTGCATAAGAAAGGGAAACAATGGAAGAAATTGCATACGGGACAATCATCCTCAACCTCAGTGATAACGTTCTAAGGCAAGTAATGGAGGTTGAAACTGCATACAAGATATGGACGAAGTTGGAAGAAATTTTTCTCTCTAGAGAATTACCAAACAAGGTATACATCAAAGAGAAATATTTCACTTACAAGATGGGCAACTCAAAAACCCTAAGTGAGAATCTTGACGACTTCAAGAAACTATCATCAGAATTCAAAAGCTTAGGGGAAAAGATTGGTGATGACAACGAAGCTTTCATCCCTTTGAACTCACTTCCTGAGGCATATAAAGAAGTGAAACTCACTTCCTGA
mRNA sequence
ATGGCAGTCGCAAGAATCGATATTGACAAGTTCGATGGTAAAGGTGATTTTGAGTTATGGAAGGTCAAAATTAAAGCACTTCTGGGACAACATAAAGCATCCAAGGCCATTCTAGATCAAGCAAATGATAACGTTCTAAGGCAAGTAATGGAGGTTGAAACTGCATACAAGATATGGACGAAGTTGGAAGAAATTTTTCTCTCTAGAGAATTACCAAACAAGGTATACATCAAAGAGAAATATTTCACTTACAAGATGGGCAACTCAAAAACCCTAAGTGAGAATCTTGACGACTTCAAGAAACTATCATCAGAATTCAAAAGCTTAGGGGAAAAGATTGGTGATGACAACGAAGCTTTCATCCCTTTGAACTCACTTCCTGAGGCATATAAAGAAGTGAAACTCACTTCCTGA
Coding sequence (CDS)
ATGGCAGTCGCAAGAATCGATATTGACAAGTTCGATGGTAAAGGTGATTTTGAGTTATGGAAGGTCAAAATTAAAGCACTTCTGGGACAACATAAAGCATCCAAGGCCATTCTAGATCAAGCAAATGATAACGTTCTAAGGCAAGTAATGGAGGTTGAAACTGCATACAAGATATGGACGAAGTTGGAAGAAATTTTTCTCTCTAGAGAATTACCAAACAAGGTATACATCAAAGAGAAATATTTCACTTACAAGATGGGCAACTCAAAAACCCTAAGTGAGAATCTTGACGACTTCAAGAAACTATCATCAGAATTCAAAAGCTTAGGGGAAAAGATTGGTGATGACAACGAAGCTTTCATCCCTTTGAACTCACTTCCTGAGGCATATAAAGAAGTGAAACTCACTTCCTGA
Protein sequence
MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASKAILDQANDNVLRQVMEVETAYKIWTKLEEIFLSRELPNKVYIKEKYFTYKMGNSKTLSENLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVKLTS
Homology
BLAST of Moc05g28200 vs. NCBI nr
Match:
XP_038896323.1 (uncharacterized protein LOC120084587 [Benincasa hispida])
HSP 1 Score: 161.8 bits (408), Expect = 4.3e-36
Identity = 75/144 (52.08%), Postives = 109/144 (75.69%), Query Frame = 0
Query: 1 MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASKAILD----------QANDNVLRQVM 60
M++AR +++KFDGKGDF LWK KIKA+L Q KA +A+L+ Q ++
Sbjct: 1 MSIARFEVEKFDGKGDFGLWKAKIKAILDQQKAHRALLNPSTLSATMTAQEKEDWELATY 60
Query: 61 EVETAYKIWTKLEEIFLSRELPNKVYIKEKYFTYKMGNSKTLSENLDDFKKLSSEFKSLG 120
+ ETAY+IWTKLEE++ +++LP+K+Y+ EK+FT+KM +SKTL+ N D+FKK+ +EFK+LG
Sbjct: 61 DQETAYRIWTKLEELYATKDLPSKMYLSEKFFTFKMDSSKTLTNNFDEFKKIVAEFKTLG 120
Query: 121 EKIGDDNEAFIPLNSLPEAYKEVK 135
EK+ D NEA++ NSLPE+YKE+K
Sbjct: 121 EKLSDKNEAYVLPNSLPESYKEIK 144
BLAST of Moc05g28200 vs. NCBI nr
Match:
XP_038889933.1 (uncharacterized protein LOC120079695 [Benincasa hispida])
HSP 1 Score: 154.5 bits (389), Expect = 6.8e-34
Identity = 76/162 (46.91%), Postives = 109/162 (67.28%), Query Frame = 0
Query: 1 MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASKAILD--------------------- 60
M R +I+KFDGK DFELWK KIKA+LGQ KA AI D
Sbjct: 1 MTTTRFEIEKFDGKTDFELWKAKIKAVLGQQKALLAITDLTKYPKTFTDVEKEIIEVNAY 60
Query: 61 -----QANDNVLRQVMEVETAYKIWTKLEEIFLSRELPNKVYIKEKYFTYKMGNSKTLSE 120
DNVLRQ+++ +TA+ +W KL EI+L+++L NK + ++++FTYKM +K+L+E
Sbjct: 61 GTIVLNVTDNVLRQIVDRQTAFDLWNKLNEIYLNKDLLNKAFSRKRFFTYKMDYAKSLTE 120
Query: 121 NLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVKLT 137
NL++FK+LS EF+S+G+ IG++NE FI LNSLP+++K+VK T
Sbjct: 121 NLNEFKRLSLEFRSIGDNIGEENEVFILLNSLPDSFKDVKAT 162
BLAST of Moc05g28200 vs. NCBI nr
Match:
XP_038890043.1 (uncharacterized protein LOC120079747 [Benincasa hispida])
HSP 1 Score: 154.1 bits (388), Expect = 8.9e-34
Identity = 79/160 (49.38%), Postives = 107/160 (66.88%), Query Frame = 0
Query: 1 MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASKAILDQA------------------- 60
MA R +I+KFD K DFELWKVKIK +LGQ KA AI D A
Sbjct: 1 MATTRYEIEKFDSKTDFELWKVKIKVVLGQQKALLAITDPAKYPETLTEAEKETIEVNAC 60
Query: 61 -------NDNVLRQVMEVETAYKIWTKLEEIFLSRELPNKVYIKEKYFTYKMGNSKTLSE 120
DNVLRQV+ TAY +W KL EI+L+++L NK +++E++FTYKM +K+L++
Sbjct: 61 GTIVLNVTDNVLRQVINQPTAYALWNKLNEIYLNKDLSNKAFLRERFFTYKMDAAKSLTD 120
Query: 121 NLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVK 135
L++FK+LSSEF+S+G IG++NEAFI LNSLPE++K+ K
Sbjct: 121 ILNEFKRLSSEFRSIGYNIGEENEAFILLNSLPESFKDAK 160
BLAST of Moc05g28200 vs. NCBI nr
Match:
XP_038885928.1 (uncharacterized protein LOC120076236 [Benincasa hispida])
HSP 1 Score: 149.1 bits (375), Expect = 2.9e-32
Identity = 73/160 (45.62%), Postives = 107/160 (66.88%), Query Frame = 0
Query: 1 MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASKAILDQAN------------------ 60
M R +I+KF+ K DFELWK KIK +L + KA AI D A
Sbjct: 1 MTTTRYEIEKFEAKTDFELWKAKIKVVLRKQKALLAITDPAKYPKILFKAEKETIESNAY 60
Query: 61 --------DNVLRQVMEVETAYKIWTKLEEIFLSRELPNKVYIKEKYFTYKMGNSKTLSE 120
D+VLRQ+++ TAY +W KL +I+L+++LPNK +++E++FTYKM +K+L++
Sbjct: 61 GTIVLNVIDSVLRQIVDRPTAYALWNKLNDIYLNKDLPNKAFLRERFFTYKMDPAKSLTD 120
Query: 121 NLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVK 135
NL++FK LSS+F+S+G+ IG++NEAFI LNSLPE +K+VK
Sbjct: 121 NLNEFKSLSSDFRSIGDNIGEENEAFILLNSLPETFKDVK 160
BLAST of Moc05g28200 vs. NCBI nr
Match:
XP_038880522.1 (uncharacterized protein LOC120072186 [Benincasa hispida])
HSP 1 Score: 148.7 bits (374), Expect = 3.7e-32
Identity = 74/160 (46.25%), Postives = 107/160 (66.88%), Query Frame = 0
Query: 1 MAVARIDIDKFDGKGDFELWKVKIKALLGQHK--------------------------AS 60
MA R +I+KFDGK +FELWK KIK +LGQ K A
Sbjct: 1 MATTRFEIEKFDGKTNFELWKAKIKIVLGQQKELVAITNPTKYPKTLTDAEKETIEVNAH 60
Query: 61 KAILDQANDNVLRQVMEVETAYKIWTKLEEIFLSRELPNKVYIKEKYFTYKMGNSKTLSE 120
I+ D+VLRQ+++ +T Y +W KL EI+L+++LPNK ++KE +FTYKM K+L+E
Sbjct: 61 VTIVSNVTDSVLRQIVDQQTDYDLWNKLNEIYLNKDLPNKDFLKELFFTYKMDAVKSLTE 120
Query: 121 NLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVK 135
NL++FK+LSSEF+S+G+ I ++NEAFI LNSLP+++K+V+
Sbjct: 121 NLNEFKRLSSEFRSIGDNIREENEAFILLNSLPDSFKDVQ 160
BLAST of Moc05g28200 vs. ExPASy Swiss-Prot
Match:
P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 79.3 bits (194), Expect = 3.7e-14
Identity = 45/162 (27.78%), Postives = 84/162 (51.85%), Query Frame = 0
Query: 1 MAVARIDIDKFDGKGDFELWKVKIKALL---GQHK-----------------------AS 60
M+ + ++ KF+G F W+ +++ LL G HK A+
Sbjct: 1 MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAA 60
Query: 61 KAILDQANDNVLRQVMEVETAYKIWTKLEEIFLSRELPNKVYIKEKYFTYKMGNSKTLSE 120
AI +D+V+ +++ +TA IWT+LE +++S+ L NK+Y+K++ + M
Sbjct: 61 SAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLS 120
Query: 121 NLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVKLT 137
+L+ F L ++ +LG KI ++++A + LNSLP +Y + T
Sbjct: 121 HLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATT 162
BLAST of Moc05g28200 vs. ExPASy TrEMBL
Match:
A0A2P5CTT8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_273130 PE=4 SV=1)
HSP 1 Score: 142.5 bits (358), Expect = 1.3e-30
Identity = 70/162 (43.21%), Postives = 106/162 (65.43%), Query Frame = 0
Query: 1 MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASKAILDQAN------------------ 60
M ++I+I+KFDGKGDF +WK K+KA+L Q K +K + D +
Sbjct: 1 MGTSKIEIEKFDGKGDFNMWKKKMKAVLVQQKCAKVLGDASGLPETMKPSEKEELLETAY 60
Query: 61 --------DNVLRQVMEVETAYKIWTKLEEIFLSRELPNKVYIKEKYFTYKMGNSKTLSE 120
DNVLRQV E +TA K+W+KL+ ++L++ L NK+Y+KE+ F +KM ++K+L +
Sbjct: 61 SLLILNLADNVLRQVDEQDTAAKVWSKLDSLYLTKTLSNKIYLKEQLFGFKMDSTKSLED 120
Query: 121 NLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVKLT 137
NLDDFK+++ ++ EKI D+N+A I LNSLPE+YK++K T
Sbjct: 121 NLDDFKRITVSLANIDEKINDENQAIIILNSLPESYKDLKST 162
BLAST of Moc05g28200 vs. ExPASy TrEMBL
Match:
A0A2P5FE65 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_080180 PE=4 SV=1)
HSP 1 Score: 142.1 bits (357), Expect = 1.7e-30
Identity = 70/160 (43.75%), Postives = 106/160 (66.25%), Query Frame = 0
Query: 1 MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASKAILDQAN------------------ 60
M ++I+I+KFDGKGDF +WK K+KA+L Q K +KA+ D +
Sbjct: 1 MGTSKIEIEKFDGKGDFNMWKKKMKAVLVQQKCAKALGDVSGLPETMKPSEKEELLETAY 60
Query: 61 --------DNVLRQVMEVETAYKIWTKLEEIFLSRELPNKVYIKEKYFTYKMGNSKTLSE 120
DNVLRQV E +TA K+W+KL+ ++L++ L NK+Y+KE+ F +KM ++K+L +
Sbjct: 61 SLLILNLADNVLRQVDEQDTAAKVWSKLDSLYLTKTLSNKIYLKEQLFGFKMDSTKSLED 120
Query: 121 NLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVK 135
NLDDFK+++ ++ EKI D+N+A I LNSLPE+YK++K
Sbjct: 121 NLDDFKRITVSLANIDEKINDENQAIIILNSLPESYKDLK 160
BLAST of Moc05g28200 vs. ExPASy TrEMBL
Match:
A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)
HSP 1 Score: 140.2 bits (352), Expect = 6.4e-30
Identity = 72/159 (45.28%), Postives = 99/159 (62.26%), Query Frame = 0
Query: 1 MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASK------------------------- 60
MA R ++ KF+G GDF LW+ KI+A+L QHK +K
Sbjct: 1 MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS 60
Query: 61 AILDQANDNVLRQVMEVETAYKIWTKLEEIFLSRELPNKVYIKEKYFTYKMGNSKTLSEN 120
IL +D VLR V E T ++W KLE ++L++ LPNK+YIKEK+F YKM SK+L EN
Sbjct: 61 TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEEN 120
Query: 121 LDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVK 135
LD+F+K+ + ++GEK+ D+N+A I LNSLPE Y+EVK
Sbjct: 121 LDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVK 159
BLAST of Moc05g28200 vs. ExPASy TrEMBL
Match:
A0A5A7U2U7 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00590 PE=4 SV=1)
HSP 1 Score: 139.4 bits (350), Expect = 1.1e-29
Identity = 72/159 (45.28%), Postives = 98/159 (61.64%), Query Frame = 0
Query: 1 MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASK------------------------- 60
MA R ++ KF+G GDF LW+ KI+A+L QHK +K
Sbjct: 1 MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYW 60
Query: 61 AILDQANDNVLRQVMEVETAYKIWTKLEEIFLSRELPNKVYIKEKYFTYKMGNSKTLSEN 120
IL +D VLR V E T ++W KLE ++L++ LPNK+YIKEK+F YKM SK L EN
Sbjct: 61 TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKILEEN 120
Query: 121 LDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVK 135
LD+F+K+ + ++GEK+ D+N+A I LNSLPE Y+EVK
Sbjct: 121 LDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVK 159
BLAST of Moc05g28200 vs. ExPASy TrEMBL
Match:
A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)
HSP 1 Score: 136.7 bits (343), Expect = 7.1e-29
Identity = 71/159 (44.65%), Postives = 98/159 (61.64%), Query Frame = 0
Query: 1 MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASK------------------------- 60
MA R ++ KF+G GDF LW+ KI+A+L QHK +K
Sbjct: 1 MASTRFEVSKFNGHGDFSLWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS 60
Query: 61 AILDQANDNVLRQVMEVETAYKIWTKLEEIFLSRELPNKVYIKEKYFTYKMGNSKTLSEN 120
IL +D VLR V E T ++W KLE ++L++ L NK+YIKEK+F YKM SK+L EN
Sbjct: 61 TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLLNKIYIKEKFFGYKMDQSKSLEEN 120
Query: 121 LDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVK 135
LD+F+K+ + ++GEK+ D+N+A I LNSLPE Y+EVK
Sbjct: 121 LDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVK 159
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P10978 | 3.7e-14 | 27.78 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
Match Name | E-value | Identity | Description | |
A0A2P5CTT8 | 1.3e-30 | 43.21 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_273130 PE=4 SV... | [more] |
A0A2P5FE65 | 1.7e-30 | 43.75 | Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_080... | [more] |
A0A5D3DNU1 | 6.4e-30 | 45.28 | Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... | [more] |
A0A5A7U2U7 | 1.1e-29 | 45.28 | Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku... | [more] |
A0A5A7UB25 | 7.1e-29 | 44.65 | Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... | [more] |
Match Name | E-value | Identity | Description | |