Moc05g28050 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g28050
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionNuclear antigen LANA-1
Locationchr5: 20558910 .. 20563162 (+)
RNA-Seq ExpressionMoc05g28050
SyntenyMoc05g28050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGACCCATCATTCGAGGAAGTCCACTCGAAATCAAGGCCGGCCATATAAAAAGAAAATACGACAAAGAACAGGGCAGAGAAATGAATACCTTGTTGGGAGGTTGGCAAGAATTGATGAGGATGGAGGGGTTTAAATAGACCTCTCATAGCACAGTTCTCGGTCCAGAGGTCTTTACCCAGCGGGCCAAAGGGTGCTCGACACAAGGCCCAACACTCTTGTGACTACTCGGCTCGGTACCCAACACCCTTGTGACTACTTGGCACGGTACCCAACACATTTGTGACTACTCAACTCGGTACCCAACACTCTTGTGGCATCTCGGCTCGGCACCCAACACCTCGAGATCTCAAAGCATGGGTCTATTGTAGATGTGACAGTTGCATGACAGGCTGCATTAGGTCTTGCAAGGAAAAGGAAAATTGACATACACTTTCACTTTCTTGTGTCCCGTGAAGATAAGATCACTCACTGCGACAGGGTGCCATGAGCCCCGCAATGATTCGACAATTCATTCGACTCGGGCCCATATGACAAGATAGTTCACTACAAAAGCTATACTCCCAATGAGATCGAAAGCATCACATTGAGAGCAGGGGGCAACTGCTATGCAATGGAAACCGAAAGTCGAGGTATAGGTGAAGATTAGAAGGAAGCCACTGGGCCGCGATGGGCTCGGTCCCGACCTGTGGCTCGGCTCCGACCCGGGGCTCGGTCCCGACCCGGGGCTCGGCCCCGACCTGTGGCTCGGCTCCGACCCGGGGCTCGGTCCCGACCCGGGGCTCGGCCCCGACCCGTGGCTCGGCCCCGACCGGGGCTCGGTCCCGACCCGTGGCTCGGCCCACGGCCCTCCAGCGGCCCTTCGTCTTCGATCCACGGTTTCGCCCAGGCCCGCCAACGAAATTAGGGTTAGCTACCTATGGAATGTTCTGGAACAACCTGACGACTATAAGTAGCGATCCAGCCTTAGAGGTAAGGGCATCTAAAACTAGCTACATTTCACATTATCCTCCTGCTAACTTAAGCATCGGAGCCCGTGTGACTAGAGTCGCACCGGTTTAGCTCATCTAGTTTTGCAGGTACTAGTCCCGGATCAACAAGTTTGGTAGGTGCGAGGAGGAGAACCGGAGGACCGAAATCCACGCATCAACAGATGGTATGCAGTGAGTTACATTTTGAATTTAAATAAAATAGTTTAGATTATTTATGTATATATGATTAAAAATGTAATAATATTTATTTAAGAACTAATATTTCGAGTGTGAATAAATTTTTTTTAATAGAATTATTAATCTAAATTGGTGTGAAATAAATATTTAATTAGTTTTGTTATTAACTTTTTAAAATATTGTTCAAGGTGTGACTAAAGTGTCTACTTAAATTATTGCATATAAATTTATCATTATAATTCATCTAAAACATGAAGTTTATAAGAAGTATAAATGAATTGGTTAGGTTGGTTTTTGTCAAAATTGATATATAAGTCTAAGAAAATTGAACTAAATTACCATTATGGTTCCAACCTATCAAATTAACTTGATTGGACTAATTTATTCCATTTAAATTTTAGCTTTCACTCATAAAGTTACGATTAAATTTTTTTACACCAATATATGAGTTAATAATTTATTACCAATTTTAATTCAATTTCATTTACTTTTTTATTATTAAAATTATAATTAATTAATTTTCTTATTAAGCTAATATATTTTATTAAAGATTAATGCATTTTAGAAGAAGGATGAAAGATAAAATATTGATGATAAAATATTGTAGCAATTGGGAGAATAGTGATAAAATACTATAGCAAACCGGAGGTAGAATAGTATTGCAACATGAGAGTAGAATGATAGAATAGTATTGCAACATGAGAGTAGAATGATATTTACTGTAGCAAACTGGATTTATAAAACTGTGAAACGTAGATTTGTCTTAACAATCCCTATCCCCTATTTTGAAAATAGGGAACCAAACACCCCCTTAATTATATATGCCTCGAATAAATCCAACTAGTAACTAATAATCATGTTATACAGAAAAAAGTAGTTATCAAATGAATTGTAATGACAATGAAAATGACCGAAAAATGATATATGGGTTAATATATGCTCTGAAGTTGAAAATATCATTAAAAAAGTTTCATCAATTCGATTATTTGAATTAATATCTAGAAATACTTTGAAAACGTCTGTTATGGTTCTGTGTACTTTAGAAAATAGACCATTTTGGTCACTATTTGCAACATTTTAAAACACATTTTATGACTATATTTTAAGAAATCTAGTGAGTGAAATATATTGATAAAATTGTGATAGAAAGAAATGAGATAAAAAAAAACAAATTGAAATGACTAAAATGGCCACTTGTAAAAGTACATGGATTAAAATGGACATTTTAAAAGTAGAGGTACTAAAATGAATAAAAGTTTAATATACCAAAAGACACGTTTTGAATGTACAAAGAACTGAAATAAACCAAAATTGAAAGTACGTGGACCAAATAGCATTTAAACAAAAAAATTTAGTATTATATCAAAAATAGGTCCTTGAACTTTAGAAAGTGCAAGCCTTTATGAACTTTCAATTCTTTTTTTTTTTACCTATTAGACTGTTTTTTTTTTCCTTTTTAAATTCAATGACCTATTAGACACCTAATATTAAAAAGATAGAAACTTGTTAAACGCAAAATTGAATGTTTTAGGGGCCTAACACAACAATGAAAGTATAGGATTTATTAGAGACCTTGTTTAAAGTTTAGCAACTTATTAAAAACAAGCCAAAGCTAGCATAACTCGACGGTAATTGACATATATCTCCAACCAACAGGTTGTGAGCTCGATCCCCACCCTTACATTGTACTGAAAAAAAAAAACTTATTAAAAACAATCTTGAAAGTTAATTTAGACTAAAATCGTAACTTATTATTTTATTCTTTCATACATCAGTGTTTGGACCAATTTGCATGCATCTCAATTAACCTCGTGAGACAATCATGTGACCCTAATATATTTTGTTGCTAAGAAAATTAGTAAGATATTAAACTTAGCAAGTGCCATTTGCTTCACTATTTAACTAATTTATAGGTAGTTATTTGAACCTTTGACTCACCGAGAAAGTTACTAATATTTTGATGGTGTTTTTTCTTCTTTTAGAATATAACATTACAACTTTATATATGTGAGTGGGAAGAAATAAATCTTCAACCTATAAAAAGGTTATAAATGCATTGATTATTGTACTATACTAAAATTAACCTTAATATCTTAACCAAGACAATAATAGATTTTTTTTAGTCCAATAAATAGAGGGAGGGATTTGAATTTAACTATGATGCCATGTTTTATTTTATTTTTATGAGATAATTTACATCAGATTAATAAAGAGTTGTAATTTTATTAACATTATTAAAAATTTTAATTTTAATAATTACTAAATATAGTTGTATTCTGATTTTTAGATTTGGTGCACCTCTACAAGTAGAGATTCATATTGTTTGAAAATGTTGTTTACATAATATTTTATTTAAGAAATAAAAAAATACTTTTTTTTAATTTAAAAAATTTTTTTGGCATGAAAGTTTTTTAAGAATTTACATTTTACGAGGATAATTGAGCTGGTCAAGATATCACCTACTCTATGTTGGACTAATTTAAAAAAATTATATATACATAAGAAAATAGAAATAGTATAGCTAGGTGTTTTTCTCTTGACCAAATATTAGGTAGGTAGTTGTGTGCACGAGGGTGTGTGGTGTGTGTTTTTTTCCCTTTTAATATTTTTCAAATTAGTTGGCCATAATTATATTCTTTTTGCATTTTTTCTTTGATCGATTTAAAAAATTTTAGCATGGTTAAAAGCATTTGTTTATCACAAAATGATCAAACTCAGATTCGGGAAATTCAGACTTTGCACACCGACGTACGAGTACCTGCAAAACAGAGTTAGGACTCCAACGCTCTAATAAGTATTCTGTCTGATTTAAATTCGAGAGAGAATATAGTTTCATGTATCTTGCGTGAGAGGTGAGAATCTATATTTATAGAGACAAGTTCCTGACGTAGCTTTCGACAGCGCTCTAATGTCTCTCCGATTACCCGAAATTTATGATGCCGTGTCAGAGAAGATCCTTGTTATCTTTGCACTTGCAGGTGCTCTTCATGATCGACTCGTAACTAACGAAGGTCGGCATGTCGGTGATATGTTGCTCCGCTCGATTTCTGCTGCTGAGTTGCCTGAACTTGAACCGATTTGA

mRNA sequence

ATGATGACCCATCATTCGAGGAAGTCCACTCGAAATCAAGGCCGGCCATATAAAAAGAAAATACGACAAAGAACAGGGCAGAGAAATGAATACCTTGTTGGGAGGTTGGCAAGAATTGATGAGGATGGAGGGGCTGCATTAGGTCTTGCAAGGAAAAGGAAAATTGACATACACTTTCACTTTCTTGTGTCCCGTGAAGATAAGATCACTCACTGCGACAGGGTGAAGATTAGAAGGAAGCCACTGGGCCGCGATGGGCTCGGTCCCGACCTGTGGCTCGGCTCCGACCCGGGGCTCGGTCCCGACCCGGGGCTCGGCCCCGACCTGTGGCTCGGCTCCGACCCGGGGCTCGGTCCCGACCCGGGGCTCGGCCCCGACCCGTGGCTCGGCCCCGACCGGGGCTCGGTCCCGACCCGTGGCTCGGCCCACGGCCCTCCAGCGGCCCTTCGTCTTCGATCCACGGTTTCGCCCAGGCCCGCCAACGAAATTAGGAGACAAGTTCCTGACGTAGCTTTCGACAGCGCTCTAATGTCTCTCCGATTACCCGAAATTTATGATGCCGTGTCAGAGAAGATCCTTGTTATCTTTGCACTTGCAGGTGCTCTTCATGATCGACTCGTAACTAACGAAGGTCGGCATGTCGGTGATATGTTGCTCCGCTCGATTTCTGCTGCTGAGTTGCCTGAACTTGAACCGATTTGA

Coding sequence (CDS)

ATGATGACCCATCATTCGAGGAAGTCCACTCGAAATCAAGGCCGGCCATATAAAAAGAAAATACGACAAAGAACAGGGCAGAGAAATGAATACCTTGTTGGGAGGTTGGCAAGAATTGATGAGGATGGAGGGGCTGCATTAGGTCTTGCAAGGAAAAGGAAAATTGACATACACTTTCACTTTCTTGTGTCCCGTGAAGATAAGATCACTCACTGCGACAGGGTGAAGATTAGAAGGAAGCCACTGGGCCGCGATGGGCTCGGTCCCGACCTGTGGCTCGGCTCCGACCCGGGGCTCGGTCCCGACCCGGGGCTCGGCCCCGACCTGTGGCTCGGCTCCGACCCGGGGCTCGGTCCCGACCCGGGGCTCGGCCCCGACCCGTGGCTCGGCCCCGACCGGGGCTCGGTCCCGACCCGTGGCTCGGCCCACGGCCCTCCAGCGGCCCTTCGTCTTCGATCCACGGTTTCGCCCAGGCCCGCCAACGAAATTAGGAGACAAGTTCCTGACGTAGCTTTCGACAGCGCTCTAATGTCTCTCCGATTACCCGAAATTTATGATGCCGTGTCAGAGAAGATCCTTGTTATCTTTGCACTTGCAGGTGCTCTTCATGATCGACTCGTAACTAACGAAGGTCGGCATGTCGGTGATATGTTGCTCCGCTCGATTTCTGCTGCTGAGTTGCCTGAACTTGAACCGATTTGA

Protein sequence

MMTHHSRKSTRNQGRPYKKKIRQRTGQRNEYLVGRLARIDEDGGAALGLARKRKIDIHFHFLVSREDKITHCDRVKIRRKPLGRDGLGPDLWLGSDPGLGPDPGLGPDLWLGSDPGLGPDPGLGPDPWLGPDRGSVPTRGSAHGPPAALRLRSTVSPRPANEIRRQVPDVAFDSALMSLRLPEIYDAVSEKILVIFALAGALHDRLVTNEGRHVGDMLLRSISAAELPELEPI
Homology
BLAST of Moc05g28050 vs. NCBI nr
Match: GCC46945.1 (hypothetical protein [Chiloscyllium punctatum])

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-08
Identity = 44/83 (53.01%), Postives = 52/83 (62.65%), Query Frame = 0

Query: 86  GLGPDLWLGSDPGLGPDPGLGPDLWLGSDPGLGPDPGLGPDPWLGPDRGSVPTRG----- 145
           GLGPD  LG DPG+G DPG+G D  +G+DPGLGPDPG+G DP LGPD G  P  G     
Sbjct: 35  GLGPDPGLGPDPGVGADPGVGADPGVGADPGLGPDPGVGADPGLGPDPGLGPGPGVGADP 94

Query: 146 --SAHGPPAALRLRSTV-SPRPA 161
              A  PP A  L+  +  PRP+
Sbjct: 95  EPIAQFPPPAPPLKPYLHCPRPS 117

BLAST of Moc05g28050 vs. NCBI nr
Match: YP_009118179.1 (nuclear antigen LANA-1 [Equid gammaherpesvirus 2] >AJF36130.1 nuclear antigen LANA-1 [Equid gammaherpesvirus 2])

HSP 1 Score: 66.6 bits (161), Expect = 3.2e-07
Identity = 37/60 (61.67%), Postives = 37/60 (61.67%), Query Frame = 0

Query: 86  GLGPDLWLGSDPGLGPDPGLGPDLWLGSDPGLGPDPGLGPDPWLGPDRGSVPTRGSAHGP 145
           G GPD   G DPG GPDPG GPD   G DPG GPDPG GPDP  GPD G  P  G   GP
Sbjct: 197 GPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPGP 256

BLAST of Moc05g28050 vs. NCBI nr
Match: AIU39518.1 (nuclear antigen LANA-1 [Equid gammaherpesvirus 2])

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-06
Identity = 39/77 (50.65%), Postives = 39/77 (50.65%), Query Frame = 0

Query: 86  GLGPDLWLGSDPGLGPDPGLGPDLWLGSDPGLGPDPGLGPDPWLGPDRGSVPTRGSAHGP 145
           G GPD   G DPG GPDPG GPD   G DPG GPDPG GPDP  GPD G  P  G    P
Sbjct: 191 GPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDP 250

Query: 146 PAALRLRSTVSPRPANE 163
                      P P  E
Sbjct: 251 GPGPDPEPGPDPEPGPE 267

BLAST of Moc05g28050 vs. NCBI nr
Match: TNN56593.1 (hypothetical protein EYF80_033130 [Liparis tanakae])

HSP 1 Score: 63.5 bits (153), Expect = 2.7e-06
Identity = 39/61 (63.93%), Postives = 39/61 (63.93%), Query Frame = 0

Query: 86  GLGPDLWLGSDPGLGPDPGLGPDLWLGSDPGLGPDPGLGP--DPWLGPDRGSVPTRGSAH 145
           GLGP L LG  PGLGP PGLGP L  G  PGLGPDPGLGP   P LGP  G  P  G  H
Sbjct: 161 GLGPGLGLG--PGLGPGPGLGPGLGPGPAPGLGPDPGLGPGLGPGLGPGLGPGPGPGDEH 219

BLAST of Moc05g28050 vs. NCBI nr
Match: XP_024137383.1 (protein SPT2 homolog [Oryzias melastigma])

HSP 1 Score: 62.4 bits (150), Expect = 6.0e-06
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 0

Query: 84  RDGLGPDLWLGSDPGLGPDPGLGPDLWLGSDPGLGPDPGLGPDPWLGPDRGSVPTRGSAH 143
           R G+GP   +G  PG+GP PG+GP   +G  PG+GP PG+GP P +GP  G VP  G   
Sbjct: 536 RPGMGPRPGMGPQPGMGPRPGMGPRPGMGPGPGMGPRPGMGPRPGMGPRPGMVPRPGMPP 595

Query: 144 GPPAAL 150
            PP  +
Sbjct: 596 RPPGPM 601

BLAST of Moc05g28050 vs. ExPASy TrEMBL
Match: A0A401TWB1 (Uncharacterized protein (Fragment) OS=Chiloscyllium punctatum OX=137246 GN=chiPu_0031249 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.3e-09
Identity = 44/83 (53.01%), Postives = 52/83 (62.65%), Query Frame = 0

Query: 86  GLGPDLWLGSDPGLGPDPGLGPDLWLGSDPGLGPDPGLGPDPWLGPDRGSVPTRG----- 145
           GLGPD  LG DPG+G DPG+G D  +G+DPGLGPDPG+G DP LGPD G  P  G     
Sbjct: 35  GLGPDPGLGPDPGVGADPGVGADPGVGADPGLGPDPGVGADPGLGPDPGLGPGPGVGADP 94

Query: 146 --SAHGPPAALRLRSTV-SPRPA 161
              A  PP A  L+  +  PRP+
Sbjct: 95  EPIAQFPPPAPPLKPYLHCPRPS 117

BLAST of Moc05g28050 vs. ExPASy TrEMBL
Match: A0A0B5GR27 (Nuclear antigen LANA-1 OS=Equine herpesvirus 2 (strain 86/87) OX=82831 GN=ORF73 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-07
Identity = 37/60 (61.67%), Postives = 37/60 (61.67%), Query Frame = 0

Query: 86  GLGPDLWLGSDPGLGPDPGLGPDLWLGSDPGLGPDPGLGPDPWLGPDRGSVPTRGSAHGP 145
           G GPD   G DPG GPDPG GPD   G DPG GPDPG GPDP  GPD G  P  G   GP
Sbjct: 197 GPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPGP 256

BLAST of Moc05g28050 vs. ExPASy TrEMBL
Match: A0A3Q3EYH3 (Uncharacterized protein OS=Kryptolebias marmoratus OX=37003 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.0e-07
Identity = 44/72 (61.11%), Postives = 45/72 (62.50%), Query Frame = 0

Query: 82  LGRD-GLGPDLWLGSDPGLGPDPGLGPDLWLGSDPGLGPDPGLGPDPWLG--------PD 141
           LG D GLG D  LGSD GLG DPGLG D  LGSDPGLG DPGLG DP LG        P 
Sbjct: 3   LGSDAGLGSDPGLGSDAGLGSDPGLGSDRGLGSDPGLGSDPGLGSDPGLGLDPGLRSDPG 62

Query: 142 RGSVPTRGSAHG 145
            GS P+ GS  G
Sbjct: 63  LGSDPSLGSDLG 74

BLAST of Moc05g28050 vs. ExPASy TrEMBL
Match: A0A0B4Q5L6 (Nuclear antigen LANA-1 OS=Equid gammaherpesvirus 2 OX=12657 GN=ORF73 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-06
Identity = 39/77 (50.65%), Postives = 39/77 (50.65%), Query Frame = 0

Query: 86  GLGPDLWLGSDPGLGPDPGLGPDLWLGSDPGLGPDPGLGPDPWLGPDRGSVPTRGSAHGP 145
           G GPD   G DPG GPDPG GPD   G DPG GPDPG GPDP  GPD G  P  G    P
Sbjct: 191 GPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDP 250

Query: 146 PAALRLRSTVSPRPANE 163
                      P P  E
Sbjct: 251 GPGPDPEPGPDPEPGPE 267

BLAST of Moc05g28050 vs. ExPASy TrEMBL
Match: A0A2N0GYQ1 (Uncharacterized protein OS=Streptomyces sp. Ag109_G2-1 OX=1938849 GN=BX280_4146 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-06
Identity = 46/90 (51.11%), Postives = 47/90 (52.22%), Query Frame = 0

Query: 86  GLGPDLWLGSDPGLGPDPGLGPDLWLGSDPGLGPDPGLGPDPWLGPDRGSVPTRGSAHGP 145
           G GPD   GSDPG GPDPG GPD   GSDPG G DPG G DP  GPD G  P    A  P
Sbjct: 208 GPGPDPGPGSDPGPGPDPGPGPDPGPGSDPGPGSDPGPGSDPGPGPDPGPGPDPTPAPDP 267

Query: 146 PAALRLRSTVSPRPANEIRRQVPDVAFDSA 176
             A       +P P  E  RQ  D A  SA
Sbjct: 268 TPAPE-PEPPAPAPGAEQPRQRRDPAPGSA 296

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
GCC46945.11.3e-0853.01hypothetical protein [Chiloscyllium punctatum][more]
YP_009118179.13.2e-0761.67nuclear antigen LANA-1 [Equid gammaherpesvirus 2] >AJF36130.1 nuclear antigen LA... [more]
AIU39518.12.1e-0650.65nuclear antigen LANA-1 [Equid gammaherpesvirus 2][more]
TNN56593.12.7e-0663.93hypothetical protein EYF80_033130 [Liparis tanakae][more]
XP_024137383.16.0e-0646.97protein SPT2 homolog [Oryzias melastigma][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A401TWB16.3e-0953.01Uncharacterized protein (Fragment) OS=Chiloscyllium punctatum OX=137246 GN=chiPu... [more]
A0A0B5GR271.5e-0761.67Nuclear antigen LANA-1 OS=Equine herpesvirus 2 (strain 86/87) OX=82831 GN=ORF73 ... [more]
A0A3Q3EYH32.0e-0761.11Uncharacterized protein OS=Kryptolebias marmoratus OX=37003 PE=4 SV=1[more]
A0A0B4Q5L61.0e-0650.65Nuclear antigen LANA-1 OS=Equid gammaherpesvirus 2 OX=12657 GN=ORF73 PE=4 SV=1[more]
A0A2N0GYQ11.3e-0651.11Uncharacterized protein OS=Streptomyces sp. Ag109_G2-1 OX=1938849 GN=BX280_4146 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..148
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g28050.1Moc05g28050.1mRNA